Rmu_sc0022755.1_g000009

MRN-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022755.1
OG0009611
Physical Location & Seq
Forward (+)
24663 .. 25112
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022755.1_g000009.1.cds

Sequence Viewer

Length: 354 bp
atgtccaccatcttctatgccgttcagtgctgccaatgctccaccatgcaggtgaagcagaggaagcagagcagtaagaacaacaagtggacttgtgtggtctgcaatcagaagcagtctgcacgcaaggtgttcgctgaaagtcccatggccagagacctccgccccttcgtccaatcctccaacatgtcccgccaattcaccgacgaaaaacaacaccacgatcttgcccttgtttctgatgttcatgagtgcaatacccaaaagagaagacggactgattggaccgagtacttggatgctgaggccgatcagcgcaccgagatgaagcaagaagatgatgaaagaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRNIP

Protein Analysis

117

Amino Acids

13.87

Weight (kDa)

8.56

Isoelectric Point (pI)

75.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 40
AciI CCGC 2 cut(s) 163, 193
AcoI YGGCCR 1 cut(s) 150
AfaI GTAC 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 150
AoxI GGCC 2 cut(s) 150, 306
ApeKI GCWGC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 64, 193
AvaII GGWCC 1 cut(s) 285
BalI TGGCCA 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 277
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 5
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcoDI GTCTC 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 2 cut(s) 152, 308
BslFI GGGAC 2 cut(s) 129, 175
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 2 cut(s) 129, 175
BsnI GGCC 2 cut(s) 152, 308
Bso31I GGTCTC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 223, 310
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 2 cut(s) 163, 193
BspANI GGCC 2 cut(s) 152, 308
BspCNI CTCAG 1 cut(s) 295
BspHI TCATGA 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 2 cut(s) 223, 310
BssT1I CCWWGG 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 303
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 304
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 2 cut(s) 226, 313
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 223, 310
BstMWI GCNNNNNNNGC 3 cut(s) 36, 55, 64
BstNSI RCATGY 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 277
BsuRI GGCC 2 cut(s) 152, 308
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 124
CciI TCATGA 1 cut(s) 247
CfoI GCGC 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 285
Csp6I GTAC 1 cut(s) 292
CviAII CATG 4 cut(s) 46, 148, 187, 248
CviJI RGCY 2 cut(s) 152, 308
CviKI_1 RGCY 2 cut(s) 152, 308
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 1 cut(s) 303
DpnI GATC 2 cut(s) 225, 312
DpnII GATC 2 cut(s) 223, 310
EaeI YGGCCR 1 cut(s) 150
EciI GGCGGA 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 4 cut(s) 49, 151, 190, 251
FaiI YATR 5 cut(s) 18, 47, 149, 188, 249
FaqI GGGAC 2 cut(s) 129, 175
FatI CATG 4 cut(s) 45, 147, 186, 247
FauI CCCGC 1 cut(s) 200
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 31
GlaI GCGC 1 cut(s) 317
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 2 cut(s) 152, 308
HhaI GCGC 1 cut(s) 318
Hin1II CATG 4 cut(s) 49, 151, 190, 251
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HphI GGTGA 2 cut(s) 64, 193
Hpy166II GTNNAC 2 cut(s) 6, 90
Hpy188I TCNGA 2 cut(s) 111, 241
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 2 cut(s) 6, 90
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 178
HpyCH4V TGCA 4 cut(s) 49, 105, 122, 255
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 55, 64
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 4 cut(s) 49, 151, 190, 251
HspAI GCGC 1 cut(s) 316
Kzo9I GATC 2 cut(s) 223, 310
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 2 cut(s) 35, 166
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 289
MalI GATC 2 cut(s) 225, 312
MboI GATC 2 cut(s) 223, 310
MboII GAAGA 3 cut(s) 4, 282, 347
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 4 cut(s) 54, 170, 190, 298
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
MslI CAYNNNNRTG 2 cut(s) 50, 323
Msp20I TGGCCA 1 cut(s) 152
MwoI GCNNNNNNNGC 3 cut(s) 36, 55, 64
NcoI CCATGG 1 cut(s) 147
NdeII GATC 2 cut(s) 223, 310
NlaIII CATG 4 cut(s) 49, 151, 190, 251
NspI RCATGY 1 cut(s) 190
PagI TCATGA 1 cut(s) 247
PaqCI CACCTGC 1 cut(s) 40
PciI ACATGT 1 cut(s) 186
PkrI GCNGC 1 cut(s) 32
PscI ACATGT 1 cut(s) 186
PspPI GGNCC 1 cut(s) 285
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 2 cut(s) 50, 323
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 2 cut(s) 223, 310
Sau96I GGNCC 1 cut(s) 285
ScaI AGTACT 1 cut(s) 293
SetI ASST 3 cut(s) 54, 132, 162
SfaNI GCATC 1 cut(s) 289
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 2 cut(s) 50, 323
Sse9I AATT 1 cut(s) 197
SsiI CCGC 2 cut(s) 163, 193
StyI CCWWGG 1 cut(s) 147
TaqII GACCGA 1 cut(s) 302
TasI AATT 1 cut(s) 197
TatI WGTACW 1 cut(s) 291
TscAI CASTG 1 cut(s) 32
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 236, 341
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 285
XceI RCATGY 1 cut(s) 190
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.