Rh6AG193100

MRN-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009611
Physical Location & Seq
Reverse (-)
34535515 .. 34546788
11274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG193100.1

Sequence Viewer

Length: 792 bp
ATGTCCACCATCTTCTATGCCGTTCAGTGCTGCCAATGCTCCACCATGCAGGTGAAGCAGAGGAAGCAGAGCAGTAAGAACAACAAGTGGACTTGTGTGGTCTGCAATCAGAAGCAGTCTGCACGCAAGGTGTTCGCTGAAAGTCCCATGGCCAGAGACCTCCGCCCCTTCGTCCAATCCTCCAACATGTCCCGCCAATTCACCGACGAAAAACAACACCACGATCTTGCCCTTGTTTCTGATGTTCATGAGTGCAATACCCAAAAGAGAAGACGAACTGATTGGACCGAGTACCTGGATGCGGAGGCCGATCAGCGTGGTGGTTTTGAGCCCCAAGTTGTAACTGAGTTGCCGCCGGAGTTAATCAAGAAACCAAAGCTGAACACATACTATGATGCTTCTGGGTCTGCGGATACAGAAAATGGTGGTGTCAATGAGCTTCAAAATCGTAGATCAGTTATCTCTAAGAGGGATTCCAACAAACATGTGCACTCCCCCGCAGATGTGGAGAACTGGAGGTGCGAGTTGACAATAAACAAGACCACTTCAAATTGGGGCCATCTCATGAAGCAAGATGACAAGGAATCAAGAAAATTGCATGCGACAAAGGCTTCACTTACAGGTGCTTCAAAGTGGAATGACTACGTAACCGAGGATGATAATGATGGATTGAGAATCATCCACAGAAAAAGCCGTGAAGAGAATACAGAGCAATGGAGTCACTACAAAAAAAAATTGCAACGGCTACCACAGTTAGCGTCGGCGCAAAAATGCCGTCGCCATTGGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRNIP

Protein Analysis

263

Amino Acids

30.58

Weight (kDa)

9.2

Isoelectric Point (pI)

63.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRNIP PF15749 8 - 91 2.3e-12 MRN-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 40
AciI CCGC 6 cut(s) 163, 193, 302, 353, 410, 498
AcoI YGGCCR 1 cut(s) 150
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 301
AflIII ACRYGT 2 cut(s) 186, 484
AgsI TTSAA 3 cut(s) 443, 549, 630
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 2 cut(s) 379, 439
AluI AGCT 2 cut(s) 379, 439
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 1 cut(s) 150
Alw44I GTGCAC 1 cut(s) 488
AoxI GGCC 3 cut(s) 150, 306, 556
ApaLI GTGCAC 1 cut(s) 488
ApeKI GCWGC 1 cut(s) 30
ArsI GACNNNNNNTTYG 2 cut(s) 760, 792
AspLEI GCGC 1 cut(s) 766
AspS9I GGNCC 2 cut(s) 285, 556
AsuHPI GGTGA 2 cut(s) 64, 193
AvaII GGWCC 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 492
BalI TGGCCA 1 cut(s) 152
BanII GRGCYC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 17, 567, 659
BceAI ACGGC 4 cut(s) 5, 678, 758, 759
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 296
BciVI GTATCC 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 40
BfuI GTATCC 1 cut(s) 406
BisI GCNGC 2 cut(s) 31, 353
BlsI GCNGC 2 cut(s) 32, 354
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 2 cut(s) 285, 556
BmiI GGNNCC 1 cut(s) 557
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 2 cut(s) 289, 385
BpiI GAAGAC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 535
BsaAI YACGTR 1 cut(s) 646
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 147, 651
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 1 cut(s) 719
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 147, 651
BseGI GGATG 3 cut(s) 304, 661, 678
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 719
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 518
BseSI GKGCMC 1 cut(s) 492
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 3 cut(s) 152, 308, 558
BsiHKAI GWGCWC 1 cut(s) 492
BsiSI CCGG 1 cut(s) 356
BslFI GGGAC 2 cut(s) 129, 175
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 2 cut(s) 129, 175
BsnI GGCC 3 cut(s) 152, 308, 558
Bso31I GGTCTC 1 cut(s) 150
Bsp1286I GDGCHC 2 cut(s) 333, 492
Bsp143I GATC 3 cut(s) 223, 310, 452
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 6 cut(s) 163, 193, 302, 353, 410, 498
BspANI GGCC 3 cut(s) 152, 308, 558
BspCNI CTCAG 1 cut(s) 337
BspHI TCATGA 2 cut(s) 247, 564
BspLI GGNNCC 1 cut(s) 557
BspMI ACCTGC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 719
BsrI ACTGG 1 cut(s) 518
BssECI CCNNGG 2 cut(s) 147, 651
BssMI GATC 3 cut(s) 223, 310, 452
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 753
Bst6I CTCTTC 1 cut(s) 693
BstBAI YACGTR 1 cut(s) 646
BstC8I GCNNGC 2 cut(s) 124, 600
BstDEI CTNAG 2 cut(s) 345, 465
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 3 cut(s) 304, 661, 678
BstHHI GCGC 1 cut(s) 766
BstKTI GATC 3 cut(s) 226, 313, 455
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 3 cut(s) 223, 310, 452
BstMWI GCNNNNNNNGC 4 cut(s) 36, 55, 64, 608
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 3 cut(s) 190, 488, 602
BstSCI CCNGG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 492
BstSNI TACGTA 1 cut(s) 646
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 277
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 3 cut(s) 152, 308, 558
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 3 cut(s) 304, 661, 678
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 124, 600
CciI TCATGA 2 cut(s) 247, 564
CfoI GCGC 1 cut(s) 766
Cfr13I GGNCC 2 cut(s) 285, 556
CseI GACGC 1 cut(s) 747
Csp6I GTAC 1 cut(s) 292
CviAII CATG 7 cut(s) 46, 148, 187, 248, 485, 565, 599
CviJI RGCY 9 cut(s) 152, 308, 331, 379, 439, 558, 611, 693, 745
CviKI_1 RGCY 9 cut(s) 152, 308, 331, 379, 439, 558, 611, 693, 745
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 2 cut(s) 345, 465
DpnI GATC 3 cut(s) 225, 312, 454
DpnII GATC 3 cut(s) 223, 310, 452
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 693
EarI CTCTTC 1 cut(s) 693
EciI GGCGGA 1 cut(s) 152
Eco105I TACGTA 1 cut(s) 646
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 7 cut(s) 49, 151, 190, 251, 488, 568, 602
FaqI GGGAC 2 cut(s) 129, 175
FatI CATG 7 cut(s) 45, 147, 186, 247, 484, 564, 598
FauI CCCGC 2 cut(s) 200, 505
Fnu4HI GCNGC 2 cut(s) 31, 353
FokI GGATG 3 cut(s) 311, 665, 668
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 2 cut(s) 31, 353
GlaI GCGC 1 cut(s) 765
GluI GCNGC 2 cut(s) 31, 353
GsuI CTGGAG 1 cut(s) 535
HaeIII GGCC 3 cut(s) 152, 308, 558
HapII CCGG 1 cut(s) 356
HgaI GACGC 1 cut(s) 747
HhaI GCGC 1 cut(s) 766
Hin1II CATG 7 cut(s) 49, 151, 190, 251, 488, 568, 602
Hin6I GCGC 1 cut(s) 764
HinP1I GCGC 1 cut(s) 764
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HinfI GANTC 4 cut(s) 473, 584, 675, 718
HpaII CCGG 1 cut(s) 356
HphI GGTGA 2 cut(s) 64, 193
Hpy166II GTNNAC 4 cut(s) 6, 90, 490, 528
Hpy188I TCNGA 2 cut(s) 111, 241
Hpy188III TCNNGA 4 cut(s) 248, 367, 565, 588
Hpy8I GTNNAC 4 cut(s) 6, 90, 490, 528
Hpy99I CGWCG 3 cut(s) 209, 763, 780
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 753
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 7 cut(s) 49, 105, 122, 255, 490, 598, 739
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 55, 64, 608
HpyF3I CTNAG 2 cut(s) 345, 465
HpySE526I ACGT 1 cut(s) 645
Hsp92II CATG 7 cut(s) 49, 151, 190, 251, 488, 568, 602
HspAI GCGC 1 cut(s) 764
Kzo9I GATC 3 cut(s) 223, 310, 452
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 8 cut(s) 35, 166, 281, 308, 369, 387, 499, 606
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 289, 385
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 3 cut(s) 340, 646, 719
MalI GATC 3 cut(s) 225, 312, 454
MboI GATC 3 cut(s) 223, 310, 452
MboII GAAGA 3 cut(s) 4, 282, 710
MhlI GDGCHC 2 cut(s) 333, 492
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 4 cut(s) 197, 550, 593, 734
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 1 cut(s) 727
MmeI TCCRAC 2 cut(s) 207, 501
MnlI CCTC 7 cut(s) 54, 170, 190, 298, 462, 510, 646
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
MseI TTAA 1 cut(s) 362
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 4 cut(s) 36, 55, 64, 608
NcoI CCATGG 1 cut(s) 147
NdeII GATC 3 cut(s) 223, 310, 452
NlaIII CATG 7 cut(s) 49, 151, 190, 251, 488, 568, 602
NlaIV GGNNCC 1 cut(s) 557
NmuCI GTSAC 1 cut(s) 719
NspI RCATGY 3 cut(s) 190, 488, 602
PaeI GCATGC 1 cut(s) 602
PagI TCATGA 2 cut(s) 247, 564
PaqCI CACCTGC 1 cut(s) 40
PciI ACATGT 2 cut(s) 186, 484
PfeI GAWTC 3 cut(s) 473, 584, 675
PkrI GCNGC 2 cut(s) 32, 354
PleI GAGTC 1 cut(s) 726
PpsI GAGTC 1 cut(s) 726
Ppu21I YACGTR 1 cut(s) 646
PscI ACATGT 2 cut(s) 186, 484
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 557
PspPI GGNCC 2 cut(s) 285, 556
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 2 cut(s) 31, 353
Sau3AI GATC 3 cut(s) 223, 310, 452
Sau96I GGNCC 2 cut(s) 285, 556
SchI GAGTC 1 cut(s) 727
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 2 cut(s) 333, 492
SetI ASST 9 cut(s) 54, 132, 162, 297, 381, 441, 521, 625, 648
SfaNI GCATC 2 cut(s) 289, 385
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 50
SnaBI TACGTA 1 cut(s) 646
SphI GCATGC 1 cut(s) 602
Sse9I AATT 4 cut(s) 197, 550, 593, 734
SsiI CCGC 6 cut(s) 163, 193, 302, 353, 410, 498
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 753
TaiI ACGT 1 cut(s) 648
TaqII GACCGA 1 cut(s) 302
TasI AATT 4 cut(s) 197, 550, 593, 734
TauI GCSGC 1 cut(s) 355
TfiI GAWTC 3 cut(s) 473, 584, 675
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 1 cut(s) 32
TseFI GTSAC 1 cut(s) 719
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 719
TspDTI ATGAA 2 cut(s) 236, 581
TspRI CASTG 1 cut(s) 32
VneI GTGCAC 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 285
XceI RCATGY 3 cut(s) 190, 488, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.