RchiOBHm_Chr6g0273891

MRN-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009611
Physical Location & Seq
Reverse (-)
34880708 .. 34881329
622 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24571

Sequence Viewer

Length: 354 bp
ATGTCCACCATCTTCTATGCCGTTCAGTGCTGCCAATGCTCCACCATGCAGGTGAAGCAGAGGAGTAAGAACAACAAGTGGACTTGTGTGGTCTGCAATCAGAAGCAGTCTGCACGCAAGGTGTTCGCTGAAAGTCCCATGGCCAGAGACCTCCGCCCCTTCGTCCAATCCTCCAACATGTCCCGCCAATTCACCGACGAAAAACAACTCCACGATCTTGCCCTTGTTTCTGATGTTCATGAGTGCAATACCCAAAAGAGAAGACGAACTGATTGGACCGAGTACCTGGATGCTGAGGCCGATCAGCGCACCGAGATCAAGCAAGAAGATGATGAAAGAAAGTGGTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRNIP

Protein Analysis

117

Amino Acids

14.0

Weight (kDa)

8.24

Isoelectric Point (pI)

72.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRNIP PF15749 8 - 115 7.2e-20 MRN-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 40
AciI CCGC 2 cut(s) 154, 184
AcoI YGGCCR 1 cut(s) 141
AfaI GTAC 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 177
AjnI CCWGG 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 141
AoxI GGCC 2 cut(s) 141, 297
ApeKI GCWGC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 2 cut(s) 64, 184
AvaII GGWCC 1 cut(s) 276
BalI TGGCCA 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 5
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 268
Bpu10I CCTNAGC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 2 cut(s) 143, 299
BslFI GGGAC 2 cut(s) 120, 166
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 2 cut(s) 120, 166
BsnI GGCC 2 cut(s) 143, 299
Bso31I GGTCTC 1 cut(s) 141
Bsp143I GATC 3 cut(s) 214, 301, 315
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 2 cut(s) 154, 184
BspANI GGCC 2 cut(s) 143, 299
BspCNI CTCAG 1 cut(s) 286
BspHI TCATGA 1 cut(s) 238
BspMI ACCTGC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 3 cut(s) 214, 301, 315
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 295
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 3 cut(s) 217, 304, 318
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 3 cut(s) 214, 301, 315
BstMWI GCNNNNNNNGC 2 cut(s) 36, 55
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 268
BsuRI GGCC 2 cut(s) 143, 299
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 115
CciI TCATGA 1 cut(s) 238
CfoI GCGC 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 283
CviAII CATG 4 cut(s) 46, 139, 178, 239
CviJI RGCY 2 cut(s) 143, 299
CviKI_1 RGCY 2 cut(s) 143, 299
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 1 cut(s) 294
DpnI GATC 3 cut(s) 216, 303, 317
DpnII GATC 3 cut(s) 214, 301, 315
EaeI YGGCCR 1 cut(s) 141
EciI GGCGGA 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 4 cut(s) 49, 142, 181, 242
FaiI YATR 5 cut(s) 18, 47, 140, 179, 240
FaqI GGGAC 2 cut(s) 120, 166
FatI CATG 4 cut(s) 45, 138, 177, 238
FauI CCCGC 1 cut(s) 191
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 31
GlaI GCGC 1 cut(s) 308
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 2 cut(s) 143, 299
HhaI GCGC 1 cut(s) 309
Hin1II CATG 4 cut(s) 49, 142, 181, 242
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HphI GGTGA 2 cut(s) 64, 184
Hpy166II GTNNAC 2 cut(s) 6, 81
Hpy188I TCNGA 2 cut(s) 102, 232
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 2 cut(s) 6, 81
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 49, 96, 113, 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 55
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 4 cut(s) 49, 142, 181, 242
HspAI GCGC 1 cut(s) 307
Kzo9I GATC 3 cut(s) 214, 301, 315
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 4 cut(s) 35, 157, 272, 299
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 280
MalI GATC 3 cut(s) 216, 303, 317
MboI GATC 3 cut(s) 214, 301, 315
MboII GAAGA 3 cut(s) 4, 273, 338
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 1 cut(s) 188
MluNI TGGCCA 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 4 cut(s) 54, 161, 181, 289
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 2 cut(s) 36, 55
NcoI CCATGG 1 cut(s) 138
NdeII GATC 3 cut(s) 214, 301, 315
NlaIII CATG 4 cut(s) 49, 142, 181, 242
NspI RCATGY 1 cut(s) 181
PagI TCATGA 1 cut(s) 238
PaqCI CACCTGC 1 cut(s) 40
PciI ACATGT 1 cut(s) 177
PkrI GCNGC 1 cut(s) 32
PscI ACATGT 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspPI GGNCC 1 cut(s) 276
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 50
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 3 cut(s) 214, 301, 315
Sau96I GGNCC 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 287
SetI ASST 4 cut(s) 54, 123, 153, 288
SfaNI GCATC 1 cut(s) 280
SinI GGWCC 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 1 cut(s) 188
SsiI CCGC 2 cut(s) 154, 184
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 138
TaqII GACCGA 1 cut(s) 293
TasI AATT 1 cut(s) 188
TscAI CASTG 1 cut(s) 32
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 227, 348
TspRI CASTG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 276
XceI RCATGY 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.