Rw6G016830

MRN-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0009611
Physical Location & Seq
Reverse (-)
33189264 .. 33191054
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016830.1

Sequence Viewer

Length: 882 bp
ATGTCCACCATCTTCTATGCCGTTCAGTGCTGCCAATGCTCCACCATGCAGGTGAAGCAGAGGAAGCAGAGCAGTAAGAACAACAAGTGGACTTGTGTGGTCTGCAATCAGAAGCAGTCTGCACGCAAGGTGTTCGCTGAAAGTCCCATGGCCAGAGACCTCCGCCCCTTCGTCCAATCCTCCAACATGTCCCGCCAATTCACCGACGAAAAACAACACCACGATCTTGCCCTTGTTTCTGATGTTCATGAGTGCAATACCCAAAAGAGAAGACGGACTGATTGGACCGAGTACTTGGATGCTGAGGCCGATCAGCGCACCAAGATGAAGCAAGAAGATGATGAAAGAAATGTTGATGTATTTGTGGTTGTGTTCTTTTTTGATGCAGGTGGTGGTTTTGAGCCCCAAGTTGTAACTGAGTTGCCGCCGGAGTTAATCAAGAAACCAAAGCTGAACAAATACTATGATGCTTCTGGGTCTGCGGATACAGAAAATGGTGGTGTCTATGAGCTTCAAACTCGTAGACCAGTTATCTCTAAGAGGGATTCCAACAAACATGTGCACTCCCCCGCAGATGTGGAGAACTGGAGGTGCGAGTTGACAATAAACAAGAACACTTCAAATTGGAGCCATCTCATGATGCAAGATGACAAGGAATCAAGAAAATTGCATGCGACAAAGGCTTCACTTACAGGTGCTTCAAAGTGGAATGACTACGTAACCGAGGATGATAATGATGGATTGAGAATCATCAACAGAAAAAGCCGTGAAGAGAATACAGTGCAATGGAGTAATGAAACAATAGCAAACTATGAGTATGAGACAGCAACAACTGATGAGAGGGTAGAAGATGACATCCATCCTGATTTCTTGCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRNIP

Protein Analysis

293

Amino Acids

33.99

Weight (kDa)

5.7

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRNIP PF15749 8 - 105 1.6e-16 MRN-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 40, 377
Acc36I ACCTGC 2 cut(s) 40, 377
AccI GTMKAC 1 cut(s) 523
AciI CCGC 5 cut(s) 163, 193, 425, 482, 570
AcoI YGGCCR 1 cut(s) 150
AfaI GTAC 1 cut(s) 293
AflIII ACRYGT 2 cut(s) 186, 556
AgsI TTSAA 3 cut(s) 515, 621, 702
AluBI AGCT 2 cut(s) 451, 511
AluI AGCT 2 cut(s) 451, 511
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 2 cut(s) 150, 815
Alw44I GTGCAC 1 cut(s) 560
AoxI GGCC 2 cut(s) 150, 306
ApaLI GTGCAC 1 cut(s) 560
ApeKI GCWGC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 64, 193
AvaII GGWCC 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 564
BalI TGGCCA 1 cut(s) 152
BanII GRGCYC 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 564
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 17
BccI CCATC 4 cut(s) 17, 639, 731, 867
BceAI ACGGC 2 cut(s) 5, 750
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciVI GTATCC 1 cut(s) 478
BcoDI GTCTC 2 cut(s) 150, 815
BfuAI ACCTGC 2 cut(s) 40, 377
BfuI GTATCC 1 cut(s) 478
BisI GCNGC 2 cut(s) 31, 425
BlsI GCNGC 2 cut(s) 32, 426
BmcAI AGTACT 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 629
BmsI GCATC 4 cut(s) 289, 373, 457, 630
BpiI GAAGAC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 607
Bpu10I CCTNAGC 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 718
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 147, 723
Bse1I ACTGG 2 cut(s) 527, 590
Bse3DI GCAATG 1 cut(s) 791
BseDI CCNNGG 2 cut(s) 147, 723
BseGI GGATG 4 cut(s) 304, 733, 855, 859
BseMI GCAATG 1 cut(s) 791
BseMII CTCAG 2 cut(s) 294, 408
BseNI ACTGG 2 cut(s) 527, 590
BseSI GKGCMC 1 cut(s) 564
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 2 cut(s) 152, 308
BsiHKAI GWGCWC 1 cut(s) 564
BsiSI CCGG 1 cut(s) 428
BslFI GGGAC 2 cut(s) 129, 175
BsmAI GTCTC 2 cut(s) 150, 815
BsmFI GGGAC 2 cut(s) 129, 175
BsnI GGCC 2 cut(s) 152, 308
Bso31I GGTCTC 1 cut(s) 150
Bsp1286I GDGCHC 2 cut(s) 405, 564
Bsp143I GATC 2 cut(s) 223, 310
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 5 cut(s) 163, 193, 425, 482, 570
BspANI GGCC 2 cut(s) 152, 308
BspCNI CTCAG 2 cut(s) 295, 409
BspHI TCATGA 2 cut(s) 247, 636
BspLI GGNNCC 1 cut(s) 629
BspMI ACCTGC 2 cut(s) 40, 377
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 791
BsrI ACTGG 2 cut(s) 527, 590
BssECI CCNNGG 2 cut(s) 147, 723
BssMI GATC 2 cut(s) 223, 310
BssT1I CCWWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 781
Bst6I CTCTTC 1 cut(s) 765
BstBAI YACGTR 1 cut(s) 718
BstC8I GCNNGC 2 cut(s) 124, 672
BstDEI CTNAG 3 cut(s) 303, 417, 537
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 4 cut(s) 304, 733, 855, 859
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 2 cut(s) 226, 313
BstMAI GTCTC 2 cut(s) 150, 815
BstMBI GATC 2 cut(s) 223, 310
BstMWI GCNNNNNNNGC 4 cut(s) 36, 55, 64, 680
BstNSI RCATGY 3 cut(s) 190, 560, 674
BstSLI GKGCMC 1 cut(s) 564
BstSNI TACGTA 1 cut(s) 718
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 277
BsuI GTATCC 1 cut(s) 478
BsuRI GGCC 2 cut(s) 152, 308
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 4 cut(s) 304, 733, 855, 859
BtsIMutI CAGTG 2 cut(s) 32, 786
BveI ACCTGC 2 cut(s) 40, 377
Cac8I GCNNGC 2 cut(s) 124, 672
CciI TCATGA 2 cut(s) 247, 636
CfoI GCGC 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 285
Csp6I GTAC 1 cut(s) 292
CviAII CATG 7 cut(s) 46, 148, 187, 248, 557, 637, 671
CviJI RGCY 9 cut(s) 152, 308, 403, 451, 511, 630, 683, 765, 879
CviKI_1 RGCY 9 cut(s) 152, 308, 403, 451, 511, 630, 683, 765, 879
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 3 cut(s) 303, 417, 537
DpnI GATC 2 cut(s) 225, 312
DpnII GATC 2 cut(s) 223, 310
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 765
EarI CTCTTC 1 cut(s) 765
EciI GGCGGA 1 cut(s) 152
Eco105I TACGTA 1 cut(s) 718
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 7 cut(s) 49, 151, 190, 251, 560, 640, 674
FaqI GGGAC 2 cut(s) 129, 175
FatI CATG 7 cut(s) 45, 147, 186, 247, 556, 636, 670
FauI CCCGC 2 cut(s) 200, 577
FblI GTMKAC 1 cut(s) 523
Fnu4HI GCNGC 2 cut(s) 31, 425
FokI GGATG 4 cut(s) 311, 740, 842, 846
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 2 cut(s) 31, 425
GlaI GCGC 1 cut(s) 317
GluI GCNGC 2 cut(s) 31, 425
GsuI CTGGAG 1 cut(s) 607
HaeIII GGCC 2 cut(s) 152, 308
HapII CCGG 1 cut(s) 428
HhaI GCGC 1 cut(s) 318
Hin1II CATG 7 cut(s) 49, 151, 190, 251, 560, 640, 674
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HincII GTYRAC 1 cut(s) 600
HindII GTYRAC 1 cut(s) 600
HinfI GANTC 3 cut(s) 545, 656, 747
HpaII CCGG 1 cut(s) 428
HphI GGTGA 2 cut(s) 64, 193
Hpy166II GTNNAC 5 cut(s) 6, 90, 524, 562, 600
Hpy188I TCNGA 2 cut(s) 111, 241
Hpy188III TCNNGA 5 cut(s) 248, 439, 637, 660, 863
Hpy8I GTNNAC 5 cut(s) 6, 90, 524, 562, 600
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 781
HpyCH4IV ACGT 1 cut(s) 717
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 55, 64, 680
HpyF3I CTNAG 3 cut(s) 303, 417, 537
HpySE526I ACGT 1 cut(s) 717
Hsp92II CATG 7 cut(s) 49, 151, 190, 251, 560, 640, 674
HspAI GCGC 1 cut(s) 316
Kzo9I GATC 2 cut(s) 223, 310
LmnI GCTCC 2 cut(s) 44, 627
LpnPI CCDG 9 cut(s) 35, 166, 372, 441, 459, 540, 571, 678, 876
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 4 cut(s) 289, 373, 457, 630
MaeII ACGT 1 cut(s) 717
MaeIII GTNAC 2 cut(s) 412, 718
MalI GATC 2 cut(s) 225, 312
MboI GATC 2 cut(s) 223, 310
MboII GAAGA 5 cut(s) 4, 282, 347, 782, 860
MhlI GDGCHC 2 cut(s) 405, 564
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 3 cut(s) 197, 622, 665
MluNI TGGCCA 1 cut(s) 152
MmeI TCCRAC 2 cut(s) 207, 573
MnlI CCTC 8 cut(s) 54, 170, 190, 298, 534, 582, 718, 834
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
MseI TTAA 1 cut(s) 434
MslI CAYNNNNRTG 2 cut(s) 50, 323
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 1 cut(s) 428
MwoI GCNNNNNNNGC 4 cut(s) 36, 55, 64, 680
NcoI CCATGG 1 cut(s) 147
NdeII GATC 2 cut(s) 223, 310
NlaIII CATG 7 cut(s) 49, 151, 190, 251, 560, 640, 674
NlaIV GGNNCC 1 cut(s) 629
NspI RCATGY 3 cut(s) 190, 560, 674
PaeI GCATGC 1 cut(s) 674
PagI TCATGA 2 cut(s) 247, 636
PaqCI CACCTGC 2 cut(s) 40, 377
PciI ACATGT 2 cut(s) 186, 556
PfeI GAWTC 3 cut(s) 545, 656, 747
PkrI GCNGC 2 cut(s) 32, 426
Ppu21I YACGTR 1 cut(s) 718
PscI ACATGT 2 cut(s) 186, 556
PspN4I GGNNCC 1 cut(s) 629
PspPI GGNCC 1 cut(s) 285
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 2 cut(s) 50, 323
SaqAI TTAA 1 cut(s) 434
SatI GCNGC 2 cut(s) 31, 425
Sau3AI GATC 2 cut(s) 223, 310
Sau96I GGNCC 1 cut(s) 285
ScaI AGTACT 1 cut(s) 293
SduI GDGCHC 2 cut(s) 405, 564
SetI ASST 9 cut(s) 54, 132, 162, 391, 453, 513, 593, 697, 720
SfaNI GCATC 4 cut(s) 289, 373, 457, 630
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 2 cut(s) 50, 323
SnaBI TACGTA 1 cut(s) 718
SphI GCATGC 1 cut(s) 674
Sse9I AATT 3 cut(s) 197, 622, 665
SsiI CCGC 5 cut(s) 163, 193, 425, 482, 570
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 781
TaiI ACGT 1 cut(s) 720
TaqII GACCGA 1 cut(s) 302
TasI AATT 3 cut(s) 197, 622, 665
TatI WGTACW 1 cut(s) 291
TauI GCSGC 1 cut(s) 427
TfiI GAWTC 3 cut(s) 545, 656, 747
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TscAI CASTG 2 cut(s) 32, 786
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 4 cut(s) 236, 341, 357, 810
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 2 cut(s) 32, 786
VneI GTGCAC 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 285
XceI RCATGY 3 cut(s) 190, 560, 674
XmiI GTMKAC 1 cut(s) 523
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.