RLG00000013593

MRN-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009611
Physical Location & Seq
Forward (+)
33774540 .. 33776513
1974 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013593

Sequence Viewer

Length: 810 bp
ATGTCCACCATCTTCTATGCGGTTCAGTGCTGCCAATGCTCCAGCATGCAGGTGAAGCAGAGGAAGAAGAGCAGTAAGAACAACAAGTGGACTTGTGTGGTCTGTAATCAGAAGCAGTCTACACGCCAGGTGTTCGCTGAAAGTCCCATGGCTAGAGACCTCCGCCCCTTGGTCCAATCCTCCAACATGTCCCGCCAATTCACCGACCAACAACAACACCACGATCGTGCCCTTGTTTCTGATGTTCATGAGTGCAATACCCAAAAGAGAAGACGAACTGATTGGACCGAGTACCTGGATGCTGAGGCCGATCAGCGTGGTGGTTTTGAGCCCCAAGTTGTAACTGAGTTGCCGCCGGAGTTATTCAAGAAACCAAAGCTGAACAAATACTATGATGCTTCTGGGTCTGCGGATACAGAAAATGGTGGTGTCTATGAGCTTCAAAATTGTAGACCGGTTATCTCTAAGAGGAATTCCGACAAACATGTGCTCTCCCCAGCAGATGTGGAGAACTGGAGGTGCGAGTTGACAATAAACAAGAACACATCAAATTGGAGCCATCTCATGGTGCAAGATGACAAGGAATCAAGAAAATTGAATGCGACAAAGGCTTCACTTACAGGTGCTTCAAAGTGGAATGACTACGTAACCGAGGATGATAATGATGGCTTGAGAATCATCAACAGAAAAAGCCGTGCAGAGAGTACAGAGCAATGGAGTAATGAAACAGTAGCAAACTATGAGTATGAGACGGTAACAACTGATGAGAGGGTAGAAGATGACATCCATCCTGATTTCTTGCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRNIP

Protein Analysis

270

Amino Acids

31.07

Weight (kDa)

5.93

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRNIP PF15749 8 - 89 2.2e-16 MRN-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 40
AccB7I CCANNNNNTGG 1 cut(s) 565
AccI GTMKAC 2 cut(s) 119, 451
AciI CCGC 5 cut(s) 20, 163, 193, 353, 410
AcsI RAATTY 1 cut(s) 472
AfaI GTAC 2 cut(s) 293, 706
AfiI CCNNNNNNNGG 2 cut(s) 169, 565
AflIII ACRYGT 2 cut(s) 186, 484
AgeI ACCGGT 1 cut(s) 454
AgsI TTSAA 4 cut(s) 367, 443, 598, 630
AjnI CCWGG 2 cut(s) 126, 294
AleI CACNNNNGTG 1 cut(s) 225
AluBI AGCT 2 cut(s) 379, 439
AluI AGCT 2 cut(s) 379, 439
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 2 cut(s) 150, 743
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 472
AsiGI ACCGGT 1 cut(s) 454
AspS9I GGNCC 2 cut(s) 172, 285
AsuHPI GGTGA 2 cut(s) 64, 193
AvaII GGWCC 2 cut(s) 172, 285
BaeGI GKGCMC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 492
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 17
BccI CCATC 4 cut(s) 17, 567, 659, 795
BceAI ACGGC 1 cut(s) 678
BciT130I CCWGG 2 cut(s) 128, 296
BciVI GTATCC 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 150, 743
BfaI CTAG 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 40
BfuI GTATCC 1 cut(s) 406
BisI GCNGC 2 cut(s) 31, 353
BlsI GCNGC 2 cut(s) 32, 354
Bme1390I CCNGG 2 cut(s) 128, 296
Bme18I GGWCC 2 cut(s) 172, 285
BmgT120I GGNCC 2 cut(s) 172, 285
BmiI GGNNCC 1 cut(s) 557
BmrFI CCNGG 2 cut(s) 128, 296
BmsI GCATC 2 cut(s) 289, 385
BpiI GAAGAC 1 cut(s) 277
BpmI CTGGAG 2 cut(s) 25, 535
Bpu10I CCTNAGC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 691
BsaAI YACGTR 1 cut(s) 646
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 3 cut(s) 147, 168, 651
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 565
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 1 cut(s) 719
BseBI CCWGG 2 cut(s) 128, 296
BseDI CCNNGG 3 cut(s) 147, 168, 651
BseGI GGATG 4 cut(s) 304, 661, 783, 787
BseLI CCNNNNNNNGG 2 cut(s) 169, 565
BseMI GCAATG 1 cut(s) 719
BseMII CTCAG 2 cut(s) 294, 336
BseNI ACTGG 1 cut(s) 518
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 496
BsgI GTGCAG 1 cut(s) 717
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 1 cut(s) 308
BshTI ACCGGT 1 cut(s) 454
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 492
BsiSI CCGG 2 cut(s) 356, 455
BslFI GGGAC 2 cut(s) 129, 175
BslI CCNNNNNNNGG 2 cut(s) 169, 565
BsmAI GTCTC 2 cut(s) 150, 743
BsmBI CGTCTC 1 cut(s) 743
BsmFI GGGAC 2 cut(s) 129, 175
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 150
Bsp1286I GDGCHC 3 cut(s) 232, 333, 492
Bsp143I GATC 2 cut(s) 223, 310
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 5 cut(s) 20, 163, 193, 353, 410
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 2 cut(s) 295, 337
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 557
BspMI ACCTGC 1 cut(s) 40
BspQI GCTCTTC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 719
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 1 cut(s) 518
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 3 cut(s) 147, 168, 651
BssMI GATC 2 cut(s) 223, 310
BssT1I CCWWGG 2 cut(s) 147, 168
Bst2UI CCWGG 2 cut(s) 128, 296
Bst4CI ACNGT 2 cut(s) 730, 754
Bst6I CTCTTC 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 646
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 3 cut(s) 303, 345, 465
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 4 cut(s) 304, 661, 783, 787
BstKTI GATC 2 cut(s) 226, 313
BstMAI GTCTC 2 cut(s) 150, 743
BstMBI GATC 2 cut(s) 223, 310
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 3 cut(s) 36, 55, 608
BstNI CCWGG 2 cut(s) 128, 296
BstNSI RCATGY 3 cut(s) 49, 190, 488
BstSCI CCNGG 2 cut(s) 126, 294
BstSLI GKGCMC 1 cut(s) 232
BstSNI TACGTA 1 cut(s) 646
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 277
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 1 cut(s) 308
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 4 cut(s) 304, 661, 783, 787
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 47
CciI TCATGA 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 2 cut(s) 172, 285
Csp6I GTAC 2 cut(s) 292, 705
CspAI ACCGGT 1 cut(s) 454
CviAII CATG 6 cut(s) 46, 148, 187, 248, 485, 565
CviQI GTAC 2 cut(s) 292, 705
DdeI CTNAG 3 cut(s) 303, 345, 465
DpnI GATC 2 cut(s) 225, 312
DpnII GATC 2 cut(s) 223, 310
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
EciI GGCGGA 1 cut(s) 152
Eco105I TACGTA 1 cut(s) 646
Eco130I CCWWGG 2 cut(s) 147, 168
Eco24I GRGCYC 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 150
Eco47I GGWCC 2 cut(s) 172, 285
EcoRI GAATTC 1 cut(s) 472
EcoRII CCWGG 2 cut(s) 126, 294
EcoT14I CCWWGG 2 cut(s) 147, 168
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 2 cut(s) 147, 168
Esp3I CGTCTC 1 cut(s) 743
FaeI CATG 6 cut(s) 49, 151, 190, 251, 488, 568
FaqI GGGAC 2 cut(s) 129, 175
FatI CATG 6 cut(s) 45, 147, 186, 247, 484, 564
FauI CCCGC 1 cut(s) 200
FblI GTMKAC 2 cut(s) 119, 451
Fnu4HI GCNGC 2 cut(s) 31, 353
FokI GGATG 4 cut(s) 311, 668, 770, 774
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 2 cut(s) 31, 353
FspBI CTAG 1 cut(s) 153
GluI GCNGC 2 cut(s) 31, 353
GsaI CCCAGC 1 cut(s) 500
GsuI CTGGAG 2 cut(s) 25, 535
HaeIII GGCC 1 cut(s) 308
HapII CCGG 2 cut(s) 356, 455
Hin1II CATG 6 cut(s) 49, 151, 190, 251, 488, 568
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HinfI GANTC 2 cut(s) 584, 675
HpaII CCGG 2 cut(s) 356, 455
HphI GGTGA 2 cut(s) 64, 193
Hpy166II GTNNAC 5 cut(s) 6, 90, 120, 452, 528
Hpy188I TCNGA 3 cut(s) 111, 241, 478
Hpy188III TCNNGA 4 cut(s) 248, 367, 588, 791
Hpy8I GTNNAC 5 cut(s) 6, 90, 120, 452, 528
HpyCH4III ACNGT 2 cut(s) 730, 754
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 5 cut(s) 49, 255, 571, 698, 802
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 55, 608
HpyF3I CTNAG 3 cut(s) 303, 345, 465
HpySE526I ACGT 1 cut(s) 645
Hsp92II CATG 6 cut(s) 49, 151, 190, 251, 488, 568
Kzo9I GATC 2 cut(s) 223, 310
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 2 cut(s) 44, 555
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 289, 385
MaeI CTAG 1 cut(s) 153
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 3 cut(s) 340, 646, 754
MalI GATC 2 cut(s) 225, 312
MboI GATC 2 cut(s) 223, 310
MboII GAAGA 5 cut(s) 4, 76, 79, 282, 788
MhlI GDGCHC 3 cut(s) 232, 333, 492
MluCI AATT 5 cut(s) 197, 445, 472, 550, 593
MmeI TCCRAC 2 cut(s) 207, 501
MnlI CCTC 8 cut(s) 54, 170, 190, 298, 462, 510, 646, 762
MslI CAYNNNNRTG 2 cut(s) 50, 225
MspI CCGG 2 cut(s) 356, 455
MspR9I CCNGG 2 cut(s) 128, 296
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 2 cut(s) 128, 296
MwoI GCNNNNNNNGC 3 cut(s) 36, 55, 608
NcoI CCATGG 1 cut(s) 147
NdeII GATC 2 cut(s) 223, 310
NlaIII CATG 6 cut(s) 49, 151, 190, 251, 488, 568
NlaIV GGNNCC 1 cut(s) 557
NspI RCATGY 3 cut(s) 49, 190, 488
OliI CACNNNNGTG 1 cut(s) 225
PaeI GCATGC 1 cut(s) 49
PagI TCATGA 1 cut(s) 247
PaqCI CACCTGC 1 cut(s) 40
PciI ACATGT 2 cut(s) 186, 484
PciSI GCTCTTC 1 cut(s) 62
PctI GAATGC 1 cut(s) 604
PfeI GAWTC 2 cut(s) 584, 675
PflMI CCANNNNNTGG 1 cut(s) 565
PinAI ACCGGT 1 cut(s) 454
PkrI GCNGC 2 cut(s) 32, 354
Ple19I CGATCG 1 cut(s) 226
Ppu21I YACGTR 1 cut(s) 646
PscI ACATGT 2 cut(s) 186, 484
Psp6I CCWGG 2 cut(s) 126, 294
PspFI CCCAGC 1 cut(s) 496
PspGI CCWGG 2 cut(s) 126, 294
PspN4I GGNNCC 1 cut(s) 557
PspPI GGNCC 2 cut(s) 172, 285
PvuI CGATCG 1 cut(s) 226
RsaI GTAC 2 cut(s) 293, 706
RsaNI GTAC 2 cut(s) 292, 705
RseI CAYNNNNRTG 2 cut(s) 50, 225
SapI GCTCTTC 1 cut(s) 62
SatI GCNGC 2 cut(s) 31, 353
Sau3AI GATC 2 cut(s) 223, 310
Sau96I GGNCC 2 cut(s) 172, 285
ScrFI CCNGG 2 cut(s) 128, 296
SduI GDGCHC 3 cut(s) 232, 333, 492
SetI ASST 9 cut(s) 54, 132, 162, 297, 381, 441, 521, 625, 648
SfaNI GCATC 2 cut(s) 289, 385
SinI GGWCC 2 cut(s) 172, 285
SmiMI CAYNNNNRTG 2 cut(s) 50, 225
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
SnaBI TACGTA 1 cut(s) 646
SphI GCATGC 1 cut(s) 49
Sse9I AATT 5 cut(s) 197, 445, 472, 550, 593
SsiI CCGC 5 cut(s) 20, 163, 193, 353, 410
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 126, 294
StyI CCWWGG 2 cut(s) 147, 168
TaaI ACNGT 2 cut(s) 730, 754
TaiI ACGT 1 cut(s) 648
TaqII GACCGA 1 cut(s) 302
TasI AATT 5 cut(s) 197, 445, 472, 550, 593
TatI WGTACW 1 cut(s) 704
TauI GCSGC 1 cut(s) 355
TfiI GAWTC 2 cut(s) 584, 675
TscAI CASTG 1 cut(s) 32
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 236, 738
TspRI CASTG 1 cut(s) 32
Van91I CCANNNNNTGG 1 cut(s) 565
VpaK11BI GGWCC 2 cut(s) 172, 285
XapI RAATTY 1 cut(s) 472
XceI RCATGY 3 cut(s) 49, 190, 488
XmiI GTMKAC 2 cut(s) 119, 451
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.