Rorug06G0077600

MRN-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009611
Physical Location & Seq
Forward (+)
10396584 .. 10398276
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0077600.1

Sequence Viewer

Length: 402 bp
ATGTTGATTATCTTTTGCAGCTCTGCTAATCTCCAAAAGCCAGCTGAACTGGATGGGAAGGCATGTGCAGCTGTTGGACAGCCTGATCTGATGGCTCTCTTGAAGTCCGTGTGTAGTGAGGATGTGACACAAGCTCAGTGTCTTGTCACAGAAAGTTACTTTAGGGGTAAAGATTTTCAAAGGCAGCTGAAAGAAACGGTTGATCACTTGCTGTCATTAAAGACTATACCTATATTCAATGAAAATGATGCAGTTAGTACCAGAACAGATTTATGTGAGGATTCTTCTGGTATATTTTGGGACAATGACAGTTTGGCAGCTATACTAGCTAAGGAGCTAAAGGCTGATCTTCTTATCCTTATGAGTGATGTGGAGGGTCTCTACAGTGGGCCTCCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRNIP

Protein Analysis

133

Amino Acids

14.54

Weight (kDa)

4.5

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_kinase PF00696 20 - 133 6.4e-17 Amino acid kinase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 259
AgsI TTSAA 3 cut(s) 103, 179, 238
AluBI AGCT 8 cut(s) 21, 44, 71, 134, 187, 320, 329, 337
AluI AGCT 8 cut(s) 21, 44, 71, 134, 187, 320, 329, 337
Alw26I GTCTC 1 cut(s) 383
AoxI GGCC 1 cut(s) 389
ApeKI GCWGC 4 cut(s) 18, 68, 184, 317
AspS9I GGNCC 1 cut(s) 389
BbvI GCAGC 4 cut(s) 30, 80, 196, 329
BccI CCATC 2 cut(s) 47, 85
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 382
BisI GCNGC 4 cut(s) 19, 69, 185, 318
BlsI GCNGC 4 cut(s) 20, 70, 186, 319
BmgT120I GGNCC 1 cut(s) 389
BmsI GCATC 1 cut(s) 238
Bpu10I CCTNAGC 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 54
BseGI GGATG 2 cut(s) 58, 127
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 54
BseXI GCAGC 4 cut(s) 30, 80, 196, 329
BsgI GTGCAG 1 cut(s) 87
BshFI GGCC 1 cut(s) 391
BslFI GGGAC 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 314
BsnI GGCC 1 cut(s) 391
Bso31I GGTCTC 1 cut(s) 383
Bsp143I GATC 3 cut(s) 85, 202, 346
BspANI GGCC 1 cut(s) 391
BspCNI CTCAG 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 383
BsrI ACTGG 1 cut(s) 54
BssMI GATC 3 cut(s) 85, 202, 346
Bst4CI ACNGT 3 cut(s) 199, 311, 386
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 2 cut(s) 135, 330
BstF5I GGATG 2 cut(s) 58, 127
BstKTI GATC 3 cut(s) 88, 205, 349
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 3 cut(s) 85, 202, 346
BstMWI GCNNNNNNNGC 2 cut(s) 68, 326
BstNSI RCATGY 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 382
BstV1I GCAGC 4 cut(s) 30, 80, 196, 329
BsuRI GGCC 1 cut(s) 391
BtsCI GGATG 2 cut(s) 58, 127
BtsIMutI CAGTG 2 cut(s) 143, 391
Cac8I GCNNGC 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 258
CviAII CATG 1 cut(s) 63
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 2 cut(s) 135, 330
DpnI GATC 3 cut(s) 87, 204, 348
DpnII GATC 3 cut(s) 85, 202, 346
Eco31I GGTCTC 1 cut(s) 383
FaeI CATG 1 cut(s) 66
FaiI YATR 7 cut(s) 64, 227, 233, 274, 293, 323, 362
FaqI GGGAC 1 cut(s) 314
FatI CATG 1 cut(s) 62
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 4 cut(s) 19, 69, 185, 318
FokI GGATG 2 cut(s) 65, 134
Fsp4HI GCNGC 4 cut(s) 19, 69, 185, 318
FspBI CTAG 1 cut(s) 326
GluI GCNGC 4 cut(s) 19, 69, 185, 318
HaeIII GGCC 1 cut(s) 391
Hin1II CATG 1 cut(s) 66
HinfI GANTC 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 3 cut(s) 199, 311, 386
HpyCH4V TGCA 3 cut(s) 18, 68, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 326
HpyF3I CTNAG 2 cut(s) 135, 330
Hsp92II CATG 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 85, 202, 346
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 5 cut(s) 35, 54, 96, 273, 274
Lsp1109I GCAGC 4 cut(s) 30, 80, 196, 329
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 3 cut(s) 124, 145, 155
MalI GATC 3 cut(s) 87, 204, 348
MboI GATC 3 cut(s) 85, 202, 346
MboII GAAGA 2 cut(s) 276, 341
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 4 cut(s) 112, 271, 367, 402
MseI TTAA 1 cut(s) 218
MspA1I CMGCKG 3 cut(s) 44, 71, 187
MwoI GCNNNNNNNGC 2 cut(s) 68, 326
NdeII GATC 3 cut(s) 85, 202, 346
NlaIII CATG 1 cut(s) 66
NmuCI GTSAC 2 cut(s) 124, 145
NspI RCATGY 1 cut(s) 66
PfeI GAWTC 1 cut(s) 281
PkrI GCNGC 4 cut(s) 20, 70, 186, 319
PspPI GGNCC 1 cut(s) 389
PvuII CAGCTG 3 cut(s) 44, 71, 187
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 4 cut(s) 19, 69, 185, 318
Sau3AI GATC 3 cut(s) 85, 202, 346
Sau96I GGNCC 1 cut(s) 389
SetI ASST 9 cut(s) 23, 46, 73, 136, 189, 232, 322, 331, 339
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 382
SspMI CTAG 1 cut(s) 326
TaaI ACNGT 3 cut(s) 199, 311, 386
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 2 cut(s) 143, 391
TseFI GTSAC 2 cut(s) 124, 145
TseI GCWGC 4 cut(s) 18, 68, 184, 317
Tsp45I GTSAC 2 cut(s) 124, 145
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 2 cut(s) 143, 391
XceI RCATGY 1 cut(s) 66
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.