FvH4_2g12851

MRN-interacting protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
11291151 .. 11292189
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12851.t1

Sequence Viewer

Length: 432 bp
ATGAACAAATGTAATGATGCTTCTGGGTCTGGAGGAAAAGAAAATGGTGGTGTTTATGAGCTTCAAAATTGCAGACCGGTTATCTCTAAGAGGAATACCAACAAACATGTGCTCTCCCCAGCAGATGTGGAGGACTGGAACTGCAAGTTGACAATGAACAAGAACACGTCACATTGGAGCCATCTCAAGATGCAAGAGAACAATGAATCAAGATCCTTGCAAGCGAAAAATGTTACACTTACAGGTGCTTCAAAGTGGAATGATTACGTAACCAAAGATGATAATGATGGCTTGAGAATCATTAACAACAAAAGCCGTGCAGATAATACAGAGCAATGGAGTAATCAAACAATAGCAAACTATGAGTATGAGACATTAACAACTGATGAGAGGGTGGAAGATGACATCCATCCTGATTTCTTGCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.29

Weight (kDa)

5.34

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 207
AflIII ACRYGT 2 cut(s) 106, 165
AgeI ACCGGT 1 cut(s) 76
AgsI TTSAA 2 cut(s) 65, 252
AjiI CACGTC 1 cut(s) 168
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 1 cut(s) 207
AsiGI ACCGGT 1 cut(s) 76
BarI GAAGNNNNNNTAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 3 cut(s) 189, 281, 417
BceAI ACGGC 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 365
BmgBI CACGTC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 179
BmsI GCATC 2 cut(s) 7, 180
BpmI CTGGAG 1 cut(s) 51
BpuEI CTTGAG 2 cut(s) 170, 313
BsaAI YACGTR 1 cut(s) 268
BsaWI WCCGGW 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 341
BseGI GGATG 2 cut(s) 405, 409
BseMI GCAATG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 140
BseYI CCCAGC 1 cut(s) 118
BsgI GTGCAG 1 cut(s) 339
BshTI ACCGGT 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 179
BspPI GGATC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 341
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 76
BssMI GATC 1 cut(s) 212
BstBAI YACGTR 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 405, 409
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 110
BstSNI TACGTA 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BtrI CACGTC 1 cut(s) 168
BtsCI GGATG 2 cut(s) 405, 409
Cac8I GCNNGC 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 76
CspAI ACCGGT 1 cut(s) 76
CviAII CATG 1 cut(s) 107
CviJI RGCY 5 cut(s) 61, 180, 291, 315, 429
CviKI_1 RGCY 5 cut(s) 61, 180, 291, 315, 429
DdeI CTNAG 1 cut(s) 87
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
Eco105I TACGTA 1 cut(s) 268
FaeI CATG 1 cut(s) 110
FaiI YATR 4 cut(s) 57, 108, 363, 369
FatI CATG 1 cut(s) 106
FokI GGATG 2 cut(s) 392, 396
GsaI CCCAGC 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 51
HapII CCGG 1 cut(s) 77
Hin1II CATG 1 cut(s) 110
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HinfI GANTC 2 cut(s) 206, 297
HpaII CCGG 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 150
Hpy188III TCNNGA 4 cut(s) 30, 187, 210, 413
Hpy8I GTNNAC 1 cut(s) 150
HpyCH4IV ACGT 2 cut(s) 167, 267
HpyCH4V TGCA 6 cut(s) 72, 144, 193, 220, 320, 424
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 2 cut(s) 167, 267
Hsp92II CATG 1 cut(s) 110
Kzo9I GATC 1 cut(s) 212
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 7 cut(s) 9, 15, 90, 121, 132, 228, 426
LweI GCATC 2 cut(s) 7, 180
MaeII ACGT 2 cut(s) 167, 267
MaeIII GTNAC 3 cut(s) 168, 232, 268
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 1 cut(s) 410
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 1 cut(s) 67
MnlI CCTC 4 cut(s) 26, 84, 124, 384
MseI TTAA 2 cut(s) 303, 377
MspI CCGG 1 cut(s) 77
NdeII GATC 1 cut(s) 212
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 179
NmuCI GTSAC 1 cut(s) 168
NspI RCATGY 1 cut(s) 110
PciI ACATGT 1 cut(s) 106
PfeI GAWTC 2 cut(s) 206, 297
PinAI ACCGGT 1 cut(s) 76
Ppu21I YACGTR 1 cut(s) 268
PscI ACATGT 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 212
SaqAI TTAA 2 cut(s) 303, 377
Sau3AI GATC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 114
SetI ASST 4 cut(s) 63, 170, 247, 270
SfaNI GCATC 2 cut(s) 7, 180
SmlI CTYRAG 2 cut(s) 185, 292
SmoI CTYRAG 2 cut(s) 185, 292
SnaBI TACGTA 1 cut(s) 268
Sse9I AATT 1 cut(s) 67
TaiI ACGT 2 cut(s) 170, 270
TasI AATT 1 cut(s) 67
TfiI GAWTC 2 cut(s) 206, 297
Tru1I TTAA 2 cut(s) 303, 377
Tru9I TTAA 2 cut(s) 303, 377
TseFI GTSAC 1 cut(s) 168
Tsp45I GTSAC 1 cut(s) 168
TspDTI ATGAA 3 cut(s) 17, 170, 219
XceI RCATGY 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.