Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009611

Physical Location & Seq

Genomic Coordinates Reverse (-)

4530720 .. 4533434

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G043800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCCGCCATCTTCATTGCAGTTCAGTGCTGCCAATGCTCCACCATGCAGGTGAAGCAGAGGAAGCAGAGCAGCAAAAGTAACAAGTGGACATGCGTAGTCTGCAATCAAAAGCAGTCTGTACGCCAAGTGTTTGCTCAAGGTCCCATGGCCAAGGATCTTCGCCTCTTCGTCCAGTCCTCCAACATGCCCCGTCAACAACAACAGCAGCAGCAGCAACAGCCTGCACTTGCTTCTTCCACTAGTCCGTACAAGACCCAAAAGAAGAGACGAACCGATTGGACGGAATACCTCGATTCTAAGGATGATCAGGTCACCAACTTGAAGCAAGAAGAAGATGAAGGTGGGGTTGGTTTTGAGCATGAGATTGTAACAGAGTTTCCGGCAGAGTTGCCCAAGAAACGAAAGCTCAACAAATATGGCTGTTGGTCAGATACAAGAAAAGGAGATGCGGATAAACATCACAATCACAAATCAGTTTTCTCTAAGAGGAATTTCAACAAACATGTTGTCTCCCCAGCAGATGAGGAGCAGATGAAGTGCGAGCTAGCAATCACCAAGGAGACTTCAAAATGGAGAGATTTTGTAATGAGAGATGAGCTGGAACCAAGAGCAGGTCAGGAAACAAAGACTATACTTAGTGGAGCTTCCAAATGGAATGACTACGTAACCCCAGATGAGAGTGATGATTATGACCTGCCACGCATTAGTAGGAGAGAGGATGCAGATACTGCAGGCCAATGGAGCAATGAAATCAATAAGACAGTGACAAACTACGAGACGGTATTCGCAAACGATGATGAGACGGTAGAAGATGACATCCATCCTGATTTCTTGCACCTGGATAGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRNIP

Protein Analysis

285

Amino Acids

32.89

Weight (kDa)

6.03

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71760 AT1G71760
fragaria_vesca	FvH4_2g12850 FvH4_2g12851
malus_domestica	MD05G1035800.v1.1
prunus_persica	Prupe.8G043800_v2.0.a1 Prupe.8G043800_v2.0.a1
pyrus_communis	pycom05g02630
rosa_chinensis	RchiOBHm_Chr6g0273881 RchiOBHm_Chr6g0273891
rosa_laevigata	RLG00000013593
rosa_multiflora	Rmu_co8483407.1_g000001 Rmu_sc0022755.1_g000009
rosa_roxburghii	Rroxscaffold_7G00194950
rosa_rugosa	Rorug06G0077600 Rorug06G0077600
rosa_samantha	Rh6AG193100 Rh6BG197000 Rh6CG196200 Rh6CG196500 Rh6DG188200
rosa_wichuraiana	Rw6G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
Acc36I	ACCTGC	3 cut(s)	40, 605, 705
AciI	CCGC	2 cut(s)	6, 452
AclWI	GGATC	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	493
AfaI	GTAC	2 cut(s)	123, 251
AfiI	CCNNNNNNNGG	1 cut(s)	614
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	3 cut(s)	325, 499, 570
AhlI	ACTAGT	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	840
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AluBI	AGCT	4 cut(s)	409, 547, 601, 647
AluI	AGCT	4 cut(s)	409, 547, 601, 647
Alw26I	GTCTC	5 cut(s)	262, 517, 557, 773, 797
AlwI	GGATC	1 cut(s)	165
AlwNI	CAGNNNCTG	1 cut(s)	731
AoxI	GGCC	2 cut(s)	150, 736
ApeKI	GCWGC	5 cut(s)	30, 72, 208, 211, 214
ApoI	RAATTY	1 cut(s)	493
ArsI	GACNNNNNNTTYG	2 cut(s)	495, 527
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	3 cut(s)	64, 307, 547
AsuNHI	GCTAGC	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	152
BbvI	GCAGC	5 cut(s)	17, 84, 220, 223, 226
BccI	CCATC	2 cut(s)	17, 831
BciT130I	CCWGG	1 cut(s)	842
BclI	TGATCA	1 cut(s)	307
BcoDI	GTCTC	5 cut(s)	262, 517, 557, 773, 797
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	2 cut(s)	243, 548
BfmI	CTRYAG	1 cut(s)	732
BfuAI	ACCTGC	3 cut(s)	40, 605, 705
BisI	GCNGC	5 cut(s)	31, 73, 209, 212, 215
BlsI	GCNGC	5 cut(s)	32, 74, 210, 213, 216
Bme1390I	CCNGG	1 cut(s)	842
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	2 cut(s)	145, 606
BmrFI	CCNGG	1 cut(s)	842
BmsI	GCATC	2 cut(s)	439, 712
BmtI	GCTAGC	1 cut(s)	551
BpuEI	CTTGAG	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	667
BsaBI	GATNNNNATC	1 cut(s)	459
BsaJI	CCNNGG	3 cut(s)	147, 153, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	2 cut(s)	15, 754
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	842
BseDI	CCNNGG	3 cut(s)	147, 153, 558
BseGI	GGATG	4 cut(s)	310, 727, 819, 823
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseMI	GCAATG	2 cut(s)	15, 754
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	5 cut(s)	17, 84, 220, 223, 226
BseYI	CCCAGC	1 cut(s)	517
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	152, 738
BsiSI	CCGG	1 cut(s)	383
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmAI	GTCTC	5 cut(s)	262, 517, 557, 773, 797
BsmBI	CGTCTC	3 cut(s)	262, 773, 797
BsmFI	GGGAC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	152, 738
Bsp143I	GATC	2 cut(s)	157, 307
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	2 cut(s)	6, 452
BspANI	GGCC	2 cut(s)	152, 738
BspLI	GGNNCC	2 cut(s)	145, 606
BspMAI	CTGCAG	1 cut(s)	736
BspMI	ACCTGC	3 cut(s)	40, 605, 705
BspOI	GCTAGC	1 cut(s)	551
BspPI	GGATC	1 cut(s)	165
BsrDI	GCAATG	2 cut(s)	15, 754
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	3 cut(s)	147, 153, 558
BssMI	GATC	2 cut(s)	157, 307
BssT1I	CCWWGG	3 cut(s)	147, 153, 558
Bst2UI	CCWGG	1 cut(s)	842
Bst4CI	ACNGT	3 cut(s)	766, 784, 808
Bst6I	CTCTTC	2 cut(s)	173, 260
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstBAI	YACGTR	1 cut(s)	667
BstC8I	GCNNGC	4 cut(s)	225, 545, 549, 736
BstDEI	CTNAG	3 cut(s)	300, 486, 638
BstDSI	CCRYGG	1 cut(s)	147
BstEII	GGTNACC	1 cut(s)	313
BstF5I	GGATG	4 cut(s)	310, 727, 819, 823
BstKTI	GATC	2 cut(s)	160, 310
BstMAI	GTCTC	5 cut(s)	262, 517, 557, 773, 797
BstMBI	GATC	2 cut(s)	157, 307
BstMWI	GCNNNNNNNGC	8 cut(s)	36, 55, 64, 102, 214, 220, 731, 744
BstNI	CCWGG	1 cut(s)	842
BstNSI	RCATGY	3 cut(s)	96, 190, 509
BstPI	GGTNACC	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	840
BstSFI	CTRYAG	1 cut(s)	732
BstSNI	TACGTA	1 cut(s)	667
BstV1I	GCAGC	5 cut(s)	17, 84, 220, 223, 226
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	152, 738
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	4 cut(s)	310, 727, 819, 823
BtsIMutI	CAGTG	2 cut(s)	32, 771
BveI	ACCTGC	3 cut(s)	40, 605, 705
Cac8I	GCNNGC	4 cut(s)	225, 545, 549, 736
CaiI	CAGNNNCTG	1 cut(s)	731
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	122, 250
CviAII	CATG	6 cut(s)	46, 93, 148, 187, 362, 506
CviJI	RGCY	8 cut(s)	152, 223, 409, 423, 547, 601, 647, 738
CviKI_1	RGCY	8 cut(s)	152, 223, 409, 423, 547, 601, 647, 738
CviQI	GTAC	2 cut(s)	122, 250
DdeI	CTNAG	3 cut(s)	300, 486, 638
DpnI	GATC	2 cut(s)	159, 309
DpnII	GATC	2 cut(s)	157, 307
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	2 cut(s)	173, 260
EarI	CTCTTC	2 cut(s)	173, 260
Eco105I	TACGTA	1 cut(s)	667
Eco130I	CCWWGG	3 cut(s)	147, 153, 558
Eco47I	GGWCC	1 cut(s)	143
Eco91I	GGTNACC	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	143
EcoO65I	GGTNACC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	840
EcoT14I	CCWWGG	3 cut(s)	147, 153, 558
ErhI	CCWWGG	3 cut(s)	147, 153, 558
Esp3I	CGTCTC	3 cut(s)	262, 773, 797
FaeI	CATG	6 cut(s)	49, 96, 151, 190, 365, 509
FaiI	YATR	9 cut(s)	47, 94, 149, 188, 363, 420, 507, 635, 693
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	6 cut(s)	45, 92, 147, 186, 361, 505
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	5 cut(s)	31, 73, 209, 212, 215
FokI	GGATG	4 cut(s)	317, 734, 806, 810
Fsp4HI	GCNGC	5 cut(s)	31, 73, 209, 212, 215
FspBI	CTAG	2 cut(s)	243, 548
GluI	GCNGC	5 cut(s)	31, 73, 209, 212, 215
GsaI	CCCAGC	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	152, 738
HapII	CCGG	1 cut(s)	383
Hin1II	CATG	6 cut(s)	49, 96, 151, 190, 365, 509
HincII	GTYRAC	1 cut(s)	197
HindII	GTYRAC	1 cut(s)	197
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	3 cut(s)	64, 307, 547
Hpy166II	GTNNAC	2 cut(s)	90, 197
Hpy188I	TCNGA	1 cut(s)	433
Hpy188III	TCNNGA	3 cut(s)	620, 827, 852
Hpy8I	GTNNAC	2 cut(s)	90, 197
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	3 cut(s)	766, 784, 808
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	7 cut(s)	20, 49, 105, 227, 725, 734, 838
HpyF10VI	GCNNNNNNNGC	8 cut(s)	36, 55, 64, 102, 214, 220, 731, 744
HpyF3I	CTNAG	3 cut(s)	300, 486, 638
HpySE526I	ACGT	1 cut(s)	666
Hsp92II	CATG	6 cut(s)	49, 96, 151, 190, 365, 509
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	157, 307
LmnI	GCTCC	4 cut(s)	44, 529, 644, 744
Lsp1109I	GCAGC	5 cut(s)	17, 84, 220, 223, 226
LweI	GCATC	2 cut(s)	439, 712
MaeI	CTAG	2 cut(s)	243, 548
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	5 cut(s)	80, 313, 370, 667, 766
MalI	GATC	2 cut(s)	159, 309
MboI	GATC	2 cut(s)	157, 307
MboII	GAAGA	8 cut(s)	4, 152, 160, 228, 277, 344, 347, 824
MflI	RGATCY	1 cut(s)	157
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	1 cut(s)	493
MluNI	TGGCCA	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	7 cut(s)	54, 176, 190, 302, 483, 520, 712
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	152
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	842
MvaI	CCWGG	1 cut(s)	842
MwoI	GCNNNNNNNGC	8 cut(s)	36, 55, 64, 102, 214, 220, 731, 744
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	157, 307
NheI	GCTAGC	1 cut(s)	547
NlaIII	CATG	6 cut(s)	49, 96, 151, 190, 365, 509
NlaIV	GGNNCC	2 cut(s)	145, 606
NmuCI	GTSAC	2 cut(s)	313, 766
NspI	RCATGY	3 cut(s)	96, 190, 509
PaqCI	CACCTGC	1 cut(s)	40
PciI	ACATGT	1 cut(s)	505
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	5 cut(s)	32, 74, 210, 213, 216
Ppu21I	YACGTR	1 cut(s)	667
PpuMI	RGGWCCY	1 cut(s)	143
PscI	ACATGT	1 cut(s)	505
Psp5II	RGGWCCY	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	840
PspEI	GGTNACC	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	840
PspN4I	GGNNCC	2 cut(s)	145, 606
PspPI	GGNCC	1 cut(s)	143
PspPPI	RGGWCCY	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	736
PstNI	CAGNNNCTG	1 cut(s)	731
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	123, 251
RsaNI	GTAC	2 cut(s)	122, 250
RseI	CAYNNNNRTG	1 cut(s)	50
SatI	GCNGC	5 cut(s)	31, 73, 209, 212, 215
Sau3AI	GATC	2 cut(s)	157, 307
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	842
SfaNI	GCATC	2 cut(s)	439, 712
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
SnaBI	TACGTA	1 cut(s)	667
SpeI	ACTAGT	1 cut(s)	242
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	2 cut(s)	6, 452
SspMI	CTAG	2 cut(s)	243, 548
StyD4I	CCNGG	1 cut(s)	840
StyI	CCWWGG	3 cut(s)	147, 153, 558
TaaI	ACNGT	3 cut(s)	766, 784, 808
TaiI	ACGT	1 cut(s)	669
TaqI	TCGA	1 cut(s)	294
TasI	AATT	1 cut(s)	493
TfiI	GAWTC	1 cut(s)	296
TscAI	CASTG	2 cut(s)	32, 771
TseFI	GTSAC	2 cut(s)	313, 766
TseI	GCWGC	5 cut(s)	30, 72, 208, 211, 214
Tsp45I	GTSAC	2 cut(s)	313, 766
TspDTI	ATGAA	4 cut(s)	4, 354, 551, 765
TspGWI	ACGGA	2 cut(s)	237, 299
TspRI	CASTG	2 cut(s)	32, 771
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	493
XceI	RCATGY	3 cut(s)	96, 190, 509
XspI	CTAG	2 cut(s)	243, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.