AT1G72280

endoplasmic reticulum

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
27211821 .. 27214688
2868 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72280.1

Sequence Viewer

Length: 1410 bp
ATGGGAAAAGGCGCAATCAAAGAAGAAGAGAGCGAAAAGAAGAGAAAAACATGGCGATGGCCTTTAGCGACTTTGGTTGTCGTGTTTTTGGCAGTTGCTGTGAGCTCTAGGACGAATTCCAATGTCGGTTTCTTCTTCAGCGATCGAAATTCTTGTAGCTGTTCACTTCAGAAAACAGGTAAATACAAAGGTATGATTGAGGACTGTTGCTGTGATTATGAAACAGTTGACAATCTCAACACTGAGGTTTTGAATCCTTTGCTTCAAGATCTCGTCACAACTCCATTTTTCCGGTACTATAAGGTTAAACTATGGTGTGACTGCCCATTCTGGCCAGACGATGGAATGTGTCGTTTGCGTGATTGCAGTGTCTGTGAATGTCCAGAGAATGAGTTTCCAGAACCATTTAAAAAGCCATTTGTCCCAGGTCTTCCTTCTGATGATCTCAAGTGTCAAGAGGGAAAACCTCAGGGAGCTGTTGACCGTACTATAGATAACAGAGCATTCAGAGGATGGGTCGAAACCAAGAATCCATGGACGCATGACGATGACACAGATAGTGGTGAGATGAGTTATGTTAATCTTCAGTTAAACCCCGAACGGTATACTGGTTATACTGGACCTTCAGCTAGAAGGATTTGGGACTCCATATATTCAGAGAACTGTCCAAAATATTCATCTGGGGAGACTTGTCCAGAGAAAAAAGTTTTGTACAAATTGATATCCGGTCTTCATTCTTCAATCTCGATGCACATAGCTGCTGATTATCTTCTTGATGAGTCTAGAAACCAGTGGGGACAGAACATTGAGCTGATGTACGATCGTATTCTTAGACATCCAGATCGTGTCAGAAATATGTACTTCACGTATCTCTTTGTGCTACGTGCTGTTACTAAAGCAACAGCATACTTGGAGCAGGCAGAGTATGACACAGGAAACCATGCTGAAGATCTGAAAACACAATCCTTGATCAAACAGTTGTTGTATAGTCCGAAACTCCAAACAGCTTGTCCTGTTCCGTTTGATGAAGCTAAACTGTGGCAAGGTCAAAGTGGACCAGAACTGAAACAGCAGATTCAGAAACAATTCAGAAATATAAGTGCACTAATGGATTGCGTAGGTTGTGAAAAATGCCGACTTTGGGGGAAACTTCAGGTTCAGGGTCTTGGGACAGCATTGAAAATTCTCTTCTCTGTTGGAAATCAAGACATTGGTGACCAAACACTGCAACTGCAACGGAATGAGGTGATTGCACTGGTGAATTTGCTCAACCGTCTCTCCGAGTCGGTTAAAATGGTCCACGATATGAGTCCTGACGTGGAGCGGCTAATGGAGGATCAGATAGCCAAAGTATCAGCTAAACCTGCAAGATTAAGAAGAATATGGGATTTAGCTGTCTCATTCTGGTGA

Protein Analysis

469

Amino Acids

53.83

Weight (kDa)

6.17

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERO1 PF04137 84 - 433 1.2e-122 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1372
AccB7I CCANNNNNTGG 1 cut(s) 341
AccBSI CCGCTC 1 cut(s) 1324
AccI GTMKAC 1 cut(s) 605
AciI CCGC 1 cut(s) 1324
AclWI GGATC 1 cut(s) 1344
AcoI YGGCCR 1 cut(s) 332
AcsI RAATTY 4 cut(s) 115, 148, 1182, 1261
AcuI CTGAAG 6 cut(s) 121, 152, 569, 609, 966, 1136
AfaI GTAC 5 cut(s) 296, 487, 713, 818, 860
AfiI CCNNNNNNNGG 2 cut(s) 341, 1141
AgsI TTSAA 4 cut(s) 253, 266, 741, 1180
AjiI CACGTC 1 cut(s) 1318
AjnI CCWGG 1 cut(s) 424
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
Alw21I GWGCWC 2 cut(s) 107, 1105
Alw26I GTCTC 3 cut(s) 680, 1280, 1402
Alw44I GTGCAC 1 cut(s) 1101
AlwI GGATC 1 cut(s) 1344
AlwNI CAGNNNCTG 2 cut(s) 98, 372
AoxI GGCC 2 cut(s) 59, 332
ApaLI GTGCAC 1 cut(s) 1101
ApeKI GCWGC 1 cut(s) 758
ApoI RAATTY 4 cut(s) 115, 148, 1182, 1261
ArsI GACNNNNNNTTYG 2 cut(s) 994, 1026
Asp700I GAANNNNTTC 1 cut(s) 1085
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 3 cut(s) 620, 1055, 1297
AsuHPI GGTGA 4 cut(s) 575, 1226, 1258, 1270
AvaII GGWCC 3 cut(s) 620, 1055, 1297
AxyI CCTNAGG 1 cut(s) 468
BaeGI GKGCMC 1 cut(s) 1105
BalI TGGCCA 1 cut(s) 334
BanII GRGCYC 1 cut(s) 107
BbsI GAAGAC 2 cut(s) 422, 722
Bbv12I GWGCWC 2 cut(s) 107, 1105
BbvI GCAGC 1 cut(s) 745
BccI CCATC 3 cut(s) 51, 335, 507
BciT130I CCWGG 1 cut(s) 426
BclI TGATCA 1 cut(s) 969
BcoDI GTCTC 3 cut(s) 680, 1280, 1402
BfaI CTAG 3 cut(s) 108, 630, 783
BfmI CTRYAG 1 cut(s) 489
BfuAI ACCTGC 1 cut(s) 1372
BglII AGATCT 2 cut(s) 268, 949
BisI GCNGC 2 cut(s) 759, 1325
BlsI GCNGC 2 cut(s) 760, 1326
Bme1390I CCNGG 1 cut(s) 426
Bme18I GGWCC 3 cut(s) 620, 1055, 1297
BmgBI CACGTC 1 cut(s) 1318
BmgT120I GGNCC 3 cut(s) 620, 1055, 1297
BmrFI CCNGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 738
BpiI GAAGAC 2 cut(s) 422, 722
BpuEI CTTGAG 1 cut(s) 431
BsaAI YACGTR 2 cut(s) 867, 884
BsaJI CCNNGG 2 cut(s) 424, 533
BsaWI WCCGGW 2 cut(s) 291, 725
BsaXI ACNNNNNCTCC 2 cut(s) 1262, 1292
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 1141
Bse1I ACTGG 4 cut(s) 613, 622, 790, 1260
Bse21I CCTNAGG 1 cut(s) 468
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 2 cut(s) 424, 533
BseGI GGATG 2 cut(s) 518, 835
BseLI CCNNNNNNNGG 2 cut(s) 341, 1141
BseMII CTCAG 2 cut(s) 234, 482
BseNI ACTGG 4 cut(s) 613, 622, 790, 1260
BseSI GKGCMC 1 cut(s) 1105
BseXI GCAGC 1 cut(s) 745
Bsh1285I CGRYCG 2 cut(s) 145, 823
BshFI GGCC 2 cut(s) 61, 334
BsiEI CGRYCG 2 cut(s) 145, 823
BsiHKAI GWGCWC 2 cut(s) 107, 1105
BsiSI CCGG 2 cut(s) 292, 726
BslFI GGGAC 4 cut(s) 407, 656, 810, 1183
BslI CCNNNNNNNGG 2 cut(s) 341, 1141
BsmAI GTCTC 3 cut(s) 680, 1280, 1402
BsmBI CGTCTC 1 cut(s) 1280
BsmFI GGGAC 4 cut(s) 407, 656, 810, 1183
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 2 cut(s) 61, 334
Bsp1286I GDGCHC 2 cut(s) 107, 1105
Bsp1407I TGTACA 1 cut(s) 711
Bsp143I GATC 8 cut(s) 142, 268, 442, 820, 841, 949, 969, 1336
Bsp19I CCATGG 1 cut(s) 533
BspACI CCGC 1 cut(s) 1324
BspANI GGCC 2 cut(s) 61, 334
BspCNI CTCAG 2 cut(s) 235, 481
BspMI ACCTGC 1 cut(s) 1372
BspPI GGATC 1 cut(s) 1344
BsrBI CCGCTC 1 cut(s) 1324
BsrGI TGTACA 1 cut(s) 711
BsrI ACTGG 4 cut(s) 613, 622, 790, 1260
BssECI CCNNGG 2 cut(s) 424, 533
BssMI GATC 8 cut(s) 142, 268, 442, 820, 841, 949, 969, 1336
BssNAI GTATAC 1 cut(s) 606
BssT1I CCWWGG 1 cut(s) 533
Bst1107I GTATAC 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 8 cut(s) 206, 226, 485, 603, 665, 978, 1038, 1274
Bst6I CTCTTC 3 cut(s) 21, 35, 1193
BstAUI TGTACA 1 cut(s) 711
BstBAI YACGTR 2 cut(s) 867, 884
BstC8I GCNNGC 1 cut(s) 918
BstDEI CTNAG 3 cut(s) 243, 468, 830
BstDSI CCRYGG 1 cut(s) 533
BstEII GGTNACC 1 cut(s) 1214
BstF5I GGATG 2 cut(s) 518, 835
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 8 cut(s) 145, 271, 445, 823, 844, 952, 972, 1339
BstMAI GTCTC 3 cut(s) 680, 1280, 1402
BstMBI GATC 8 cut(s) 142, 268, 442, 820, 841, 949, 969, 1336
BstMCI CGRYCG 2 cut(s) 145, 823
BstMWI GCNNNNNNNGC 1 cut(s) 1364
BstNI CCWGG 1 cut(s) 426
BstPI GGTNACC 1 cut(s) 1214
BstSCI CCNGG 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 489
BstSLI GKGCMC 1 cut(s) 1105
BstV1I GCAGC 1 cut(s) 745
BstV2I GAAGAC 2 cut(s) 422, 722
BstX2I RGATCY 2 cut(s) 268, 949
BstYI RGATCY 2 cut(s) 268, 949
BstZ17I GTATAC 1 cut(s) 606
Bsu36I CCTNAGG 1 cut(s) 468
BsuRI GGCC 2 cut(s) 61, 334
BtgI CCRYGG 1 cut(s) 533
BtgZI GCGATG 1 cut(s) 70
BtrI CACGTC 1 cut(s) 1318
BtsCI GGATG 2 cut(s) 518, 835
BtsI GCAGTG 2 cut(s) 373, 1223
BtsIMutI CAGTG 5 cut(s) 240, 373, 797, 1223, 1253
BveI ACCTGC 1 cut(s) 1372
Cac8I GCNNGC 1 cut(s) 918
CaiI CAGNNNCTG 2 cut(s) 98, 372
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 3 cut(s) 620, 1055, 1297
CseI GACGC 1 cut(s) 547
Csp6I GTAC 5 cut(s) 295, 486, 712, 817, 859
CviAII CATG 4 cut(s) 51, 534, 542, 941
CviQI GTAC 5 cut(s) 295, 486, 712, 817, 859
DdeI CTNAG 3 cut(s) 243, 468, 830
DpnI GATC 8 cut(s) 144, 270, 444, 822, 843, 951, 971, 1338
DpnII GATC 8 cut(s) 142, 268, 442, 820, 841, 949, 969, 1336
DraI TTTAAA 1 cut(s) 409
EaeI YGGCCR 1 cut(s) 332
Eam1104I CTCTTC 3 cut(s) 21, 35, 1193
EarI CTCTTC 3 cut(s) 21, 35, 1193
Ecl136II GAGCTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 533
Eco24I GRGCYC 1 cut(s) 107
Eco32I GATATC 1 cut(s) 723
Eco47I GGWCC 3 cut(s) 620, 1055, 1297
Eco53kI GAGCTC 1 cut(s) 105
Eco57I CTGAAG 6 cut(s) 121, 152, 569, 609, 966, 1136
Eco81I CCTNAGG 1 cut(s) 468
Eco91I GGTNACC 1 cut(s) 1214
EcoICRI GAGCTC 1 cut(s) 105
EcoO65I GGTNACC 1 cut(s) 1214
EcoRI GAATTC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 424
EcoRV GATATC 1 cut(s) 723
EcoT14I CCWWGG 1 cut(s) 533
EcoT38I GRGCYC 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 533
Esp3I CGTCTC 1 cut(s) 1280
FaeI CATG 4 cut(s) 54, 537, 545, 944
FaqI GGGAC 4 cut(s) 407, 656, 810, 1183
FatI CATG 4 cut(s) 50, 533, 541, 940
FbaI TGATCA 1 cut(s) 969
FblI GTMKAC 1 cut(s) 605
Fnu4HI GCNGC 2 cut(s) 759, 1325
FokI GGATG 2 cut(s) 525, 822
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 759, 1325
FspBI CTAG 3 cut(s) 108, 630, 783
GlaI GCGC 1 cut(s) 13
GluI GCNGC 2 cut(s) 759, 1325
HaeIII GGCC 2 cut(s) 61, 334
HapII CCGG 2 cut(s) 292, 726
HgaI GACGC 1 cut(s) 547
HhaI GCGC 1 cut(s) 14
Hin1II CATG 4 cut(s) 54, 537, 545, 944
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 2 cut(s) 229, 481
HindII GTYRAC 2 cut(s) 229, 481
HinfI GANTC 7 cut(s) 253, 529, 644, 779, 1075, 1283, 1309
HpaII CCGG 2 cut(s) 292, 726
HphI GGTGA 4 cut(s) 575, 1226, 1258, 1270
Hpy166II GTNNAC 7 cut(s) 164, 229, 481, 606, 1055, 1103, 1300
Hpy8I GTNNAC 7 cut(s) 164, 229, 481, 606, 1055, 1103, 1300
HpyAV CCTTC 3 cut(s) 444, 627, 633
HpyCH4III ACNGT 8 cut(s) 206, 226, 485, 603, 665, 978, 1038, 1274
HpyCH4IV ACGT 3 cut(s) 866, 883, 1317
HpyCH4V TGCA 7 cut(s) 366, 751, 1103, 1228, 1234, 1253, 1367
HpyF10VI GCNNNNNNNGC 1 cut(s) 1364
HpyF3I CTNAG 3 cut(s) 243, 468, 830
HpySE526I ACGT 3 cut(s) 866, 883, 1317
Hsp92II CATG 4 cut(s) 54, 537, 545, 944
HspAI GCGC 1 cut(s) 12
Ksp22I TGATCA 1 cut(s) 969
Kzo9I GATC 8 cut(s) 142, 268, 442, 820, 841, 949, 969, 1336
LmnI GCTCC 3 cut(s) 473, 913, 1321
Lsp1109I GCAGC 1 cut(s) 745
LweI GCATC 1 cut(s) 738
MaeI CTAG 3 cut(s) 108, 630, 783
MaeII ACGT 3 cut(s) 866, 883, 1317
MaeIII GTNAC 4 cut(s) 274, 317, 889, 1214
MalI GATC 8 cut(s) 144, 270, 444, 822, 843, 951, 971, 1338
MbiI CCGCTC 1 cut(s) 1324
MboI GATC 8 cut(s) 142, 268, 442, 820, 841, 949, 969, 1336
MflI RGATCY 2 cut(s) 268, 949
MhlI GDGCHC 2 cut(s) 107, 1105
MlsI TGGCCA 1 cut(s) 334
MluCI AATT 6 cut(s) 115, 148, 716, 1085, 1182, 1261
MluNI TGGCCA 1 cut(s) 334
MlyI GAGTC 4 cut(s) 638, 788, 1292, 1318
MmeI TCCRAC 1 cut(s) 1177
MnlI CCTC 7 cut(s) 193, 238, 451, 477, 503, 1237, 1327
Mox20I TGGCCA 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 1085
MscI TGGCCA 1 cut(s) 334
MseI TTAA 6 cut(s) 306, 408, 579, 590, 1290, 1373
MslI CAYNNNNRTG 3 cut(s) 55, 546, 1405
Msp20I TGGCCA 1 cut(s) 334
MspI CCGG 2 cut(s) 292, 726
MspR9I CCNGG 1 cut(s) 426
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 1364
NcoI CCATGG 1 cut(s) 533
NdeII GATC 8 cut(s) 142, 268, 442, 820, 841, 949, 969, 1336
NlaIII CATG 4 cut(s) 54, 537, 545, 944
NmuCI GTSAC 3 cut(s) 274, 317, 1214
PctI GAATGC 1 cut(s) 503
PdmI GAANNNNTTC 1 cut(s) 1085
PfeI GAWTC 3 cut(s) 253, 529, 1075
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 2 cut(s) 760, 1326
Ple19I CGATCG 2 cut(s) 145, 823
PleI GAGTC 4 cut(s) 638, 787, 1291, 1317
PpsI GAGTC 4 cut(s) 638, 787, 1291, 1317
Ppu21I YACGTR 2 cut(s) 867, 884
Psp124BI GAGCTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 424
PspEI GGTNACC 1 cut(s) 1214
PspGI CCWGG 1 cut(s) 424
PspPI GGNCC 3 cut(s) 620, 1055, 1297
PstNI CAGNNNCTG 2 cut(s) 98, 372
PsuI RGATCY 2 cut(s) 268, 949
PvuI CGATCG 2 cut(s) 145, 823
RsaI GTAC 5 cut(s) 296, 487, 713, 818, 860
RsaNI GTAC 5 cut(s) 295, 486, 712, 817, 859
RseI CAYNNNNRTG 3 cut(s) 55, 546, 1405
SacI GAGCTC 1 cut(s) 107
SaqAI TTAA 6 cut(s) 306, 408, 579, 590, 1290, 1373
SatI GCNGC 2 cut(s) 759, 1325
Sau3AI GATC 8 cut(s) 142, 268, 442, 820, 841, 949, 969, 1336
Sau96I GGNCC 3 cut(s) 620, 1055, 1297
SchI GAGTC 4 cut(s) 638, 788, 1292, 1318
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 2 cut(s) 107, 1105
SfaNI GCATC 1 cut(s) 738
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 3 cut(s) 620, 1055, 1297
SmiMI CAYNNNNRTG 3 cut(s) 55, 546, 1405
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 6 cut(s) 115, 148, 716, 1085, 1182, 1261
SsiI CCGC 1 cut(s) 1324
SspI AATATT 1 cut(s) 674
SspMI CTAG 3 cut(s) 108, 630, 783
SstI GAGCTC 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 8 cut(s) 206, 226, 485, 603, 665, 978, 1038, 1274
TaiI ACGT 3 cut(s) 869, 886, 1320
TaqI TCGA 3 cut(s) 145, 519, 746
TasI AATT 6 cut(s) 115, 148, 716, 1085, 1182, 1261
TatI WGTACW 2 cut(s) 711, 858
TauI GCSGC 1 cut(s) 1327
TfiI GAWTC 3 cut(s) 253, 529, 1075
Tru1I TTAA 6 cut(s) 306, 408, 579, 590, 1290, 1373
Tru9I TTAA 6 cut(s) 306, 408, 579, 590, 1290, 1373
TscAI CASTG 5 cut(s) 247, 373, 797, 1230, 1260
TseFI GTSAC 3 cut(s) 274, 317, 1214
TseI GCWGC 1 cut(s) 758
Tsp45I GTSAC 3 cut(s) 274, 317, 1214
TspDTI ATGAA 4 cut(s) 234, 666, 722, 1041
TspGWI ACGGA 2 cut(s) 1008, 1252
TspRI CASTG 5 cut(s) 247, 373, 797, 1230, 1260
Van91I CCANNNNNTGG 1 cut(s) 341
VneI GTGCAC 1 cut(s) 1101
VpaK11BI GGWCC 3 cut(s) 620, 1055, 1297
XapI RAATTY 4 cut(s) 115, 148, 1182, 1261
XbaI TCTAGA 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 1085
XspI CTAG 3 cut(s) 108, 630, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.