Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009858

Physical Location & Seq

Genomic Coordinates Reverse (-)

20749688 .. 20753511

Gene Structure 3824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG189000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTTAGGGAGAAGAATGTGAAGAGATGGGTTTTAGTGGGTGCTGTGGTTGTGGTGTTATTAGCCATAGCTCTCACCTCTACCAGAGATTTTAATTCTAAACTCAACCTTTCTCTGTTTTTCAAGAACCCCAGTTCCTGCCAATGTCCTCAGGACTGCTGTTGTGATTATGAAACTGTGGACAGTGTTAATGCAGAAGTGTTGCATCCTCTGCTACAAGAGATTGTTAAAACTCCGTTTTTTCGATATTTTAAGGCCAAGCTGTGGTGTGACTGTGCCTTCTGGACTGAAGATGGTATGTGCCTCCTGCGTGACTGCAGCGTCTGCGAATGCCCAGAAAATGAATTTCCGGAACCTTCAAGAGGCCCTTTCACCGTGGCATTCCATCTGATAGTTTGGTTTGTCAAGATGATAAGCTGCAGGGATGAGATGACCTACGTGAACCTTCTACTGAACCCTGAACGTTACACTGGCTACACTGGTCCATCAGCAAGAAGGATATGGGATGCTGTTTATTCTGAAAATTGCCCAAAATATTCATCTCAGGACATTTGCCAGGAGCAAAGAGTATTGTACAAATTAATATCAGGTCTTCACTCGTCAATTTCAATCCACATAGCTTCTAGACAAGATTACCAATCTGGTTCTCCTTCTGCCTCATATCATGTGACTATTTTTCTTTTCCCTGCTGATTTTCATCTCATTTGTCCAGTTGAGGCGTTATCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

243

Amino Acids

27.77

Weight (kDa)

5.87

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERO1	PF04137	68 - 121	4.3e-15	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
ERO1	PF04137	142 - 210	1.8e-27	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72280
prunus_persica	Prupe.4G145500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027131 RchiOBHm_Chr5g0027151 RchiOBHm_Chr5g0027161 RchiOBHm_Chr5g0027251
rosa_laevigata	RLG00000032999 RLG00000033001
rosa_multiflora	Rmu_sc0000882.1_g000035 Rmu_sc0006065.1_g000015
rosa_rugosa	Rorug05G0097800 Rorug05G0124600
rosa_samantha	Rh5AG191300 Rh5AG191800 Rh5BG189000 Rh5BG189500 Rh5CG210100 Rh5DG190800 Rh5DG191600
rosa_wichuraiana	Rw5G017440 Rw5G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AccB7I	CCANNNNNTGG	1 cut(s)	264
AccIII	TCCGGA	1 cut(s)	349
AclI	AACGTT	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	2 cut(s)	264, 362
AgsI	TTSAA	3 cut(s)	124, 360, 609
AjnI	CCWGG	1 cut(s)	555
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	4 cut(s)	71, 262, 417, 620
AluI	AGCT	4 cut(s)	71, 262, 417, 620
AlwNI	CAGNNNCTG	2 cut(s)	138, 324
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	2 cut(s)	255, 364
ApeKI	GCWGC	2 cut(s)	318, 417
ApoI	RAATTY	1 cut(s)	344
AseI	ATTAAT	1 cut(s)	581
AspS9I	GGNCC	2 cut(s)	365, 482
AsuHPI	GGTGA	2 cut(s)	67, 364
AvaII	GGWCC	1 cut(s)	482
AxyI	CCTNAGG	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	584
BbvI	GCAGC	2 cut(s)	330, 404
BccI	CCATC	4 cut(s)	21, 287, 393, 493
BciT130I	CCWGG	1 cut(s)	557
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	2 cut(s)	316, 418
BisI	GCNGC	2 cut(s)	319, 418
BlsI	GCNGC	2 cut(s)	320, 419
Bme1390I	CCNGG	1 cut(s)	557
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	365, 482
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	557
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	2 cut(s)	214, 496
BmuI	ACTGGG	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	584
BsaAI	YACGTR	1 cut(s)	439
BsaBI	GATNNNNATC	1 cut(s)	696
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 362
Bse1I	ACTGG	4 cut(s)	132, 475, 484, 710
Bse21I	CCTNAGG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	696
BseAI	TCCGGA	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	3 cut(s)	205, 430, 511
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	2 cut(s)	264, 362
BseMII	CTCAG	2 cut(s)	164, 557
BseNI	ACTGG	4 cut(s)	132, 475, 484, 710
BseXI	GCAGC	2 cut(s)	330, 404
BshFI	GGCC	2 cut(s)	257, 366
BsiSI	CCGG	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	264, 362
BsmI	GAATGC	2 cut(s)	335, 380
BsnI	GGCC	2 cut(s)	257, 366
Bsp13I	TCCGGA	1 cut(s)	349
Bsp1407I	TGTACA	1 cut(s)	573
BspANI	GGCC	2 cut(s)	257, 366
BspCNI	CTCAG	2 cut(s)	163, 556
BspEI	TCCGGA	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	354
BspMAI	CTGCAG	2 cut(s)	320, 422
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	4 cut(s)	132, 475, 484, 710
BssECI	CCNNGG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	4 cut(s)	178, 185, 275, 376
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	2 cut(s)	211, 324
BstAUI	TGTACA	1 cut(s)	573
BstBAI	YACGTR	1 cut(s)	439
BstDEI	CTNAG	2 cut(s)	150, 543
BstDSI	CCRYGG	1 cut(s)	375
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	3 cut(s)	205, 430, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 324
BstNI	CCWGG	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	555
BstSFI	CTRYAG	2 cut(s)	316, 418
BstV1I	GCAGC	2 cut(s)	330, 404
BstV2I	GAAGAC	1 cut(s)	584
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	257, 366
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	3 cut(s)	205, 430, 511
BtsIMutI	CAGTG	3 cut(s)	190, 468, 477
CaiI	CAGNNNCTG	2 cut(s)	138, 324
Cfr13I	GGNCC	2 cut(s)	365, 482
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	1 cut(s)	665
CviJI	RGCY	8 cut(s)	65, 71, 257, 262, 366, 417, 474, 620
CviKI_1	RGCY	8 cut(s)	65, 71, 257, 262, 366, 417, 474, 620
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	2 cut(s)	150, 543
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	482
Eco57I	CTGAAG	1 cut(s)	309
Eco81I	CCTNAGG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	555
FaeI	CATG	1 cut(s)	668
FaiI	YATR	8 cut(s)	68, 171, 299, 502, 617, 661, 666, 730
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FatI	CATG	1 cut(s)	664
Fnu4HI	GCNGC	2 cut(s)	319, 418
FokI	GGATG	3 cut(s)	192, 437, 518
Fsp4HI	GCNGC	2 cut(s)	319, 418
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	2 cut(s)	319, 418
HaeIII	GGCC	2 cut(s)	257, 366
HapII	CCGG	1 cut(s)	350
HgaI	GACGC	1 cut(s)	310
Hin1II	CATG	1 cut(s)	668
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	2 cut(s)	67, 364
Hpy166II	GTNNAC	2 cut(s)	181, 442
Hpy188I	TCNGA	2 cut(s)	390, 520
Hpy188III	TCNNGA	8 cut(s)	124, 152, 283, 350, 360, 406, 545, 624
Hpy8I	GTNNAC	2 cut(s)	181, 442
HpyAV	CCTTC	5 cut(s)	289, 366, 455, 489, 660
HpyCH4III	ACNGT	4 cut(s)	178, 185, 275, 376
HpyCH4IV	ACGT	2 cut(s)	438, 463
HpyCH4V	TGCA	4 cut(s)	194, 205, 318, 420
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 324
HpyF3I	CTNAG	2 cut(s)	150, 543
HpySE526I	ACGT	2 cut(s)	438, 463
Hsp92II	CATG	1 cut(s)	668
Kpn2I	TCCGGA	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	2 cut(s)	330, 404
LweI	GCATC	2 cut(s)	214, 496
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	2 cut(s)	438, 463
MaeIII	GTNAC	4 cut(s)	269, 311, 464, 667
MboII	GAAGA	4 cut(s)	25, 34, 302, 584
MluCI	AATT	5 cut(s)	94, 344, 523, 578, 603
MnlI	CCTC	7 cut(s)	88, 159, 219, 314, 356, 667, 709
MroI	TCCGGA	1 cut(s)	349
MseI	TTAA	5 cut(s)	93, 189, 228, 252, 581
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	557
Mva1269I	GAATGC	2 cut(s)	335, 380
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	2 cut(s)	211, 324
NlaIII	CATG	1 cut(s)	668
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	3 cut(s)	269, 311, 667
PctI	GAATGC	2 cut(s)	335, 380
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	320, 419
Ppu21I	YACGTR	1 cut(s)	439
PshBI	ATTAAT	1 cut(s)	581
Psp1406I	AACGTT	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	555
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	365, 482
PstI	CTGCAG	2 cut(s)	320, 422
PstNI	CAGNNNCTG	2 cut(s)	138, 324
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SaqAI	TTAA	5 cut(s)	93, 189, 228, 252, 581
SatI	GCNGC	2 cut(s)	319, 418
Sau96I	GGNCC	2 cut(s)	365, 482
ScrFI	CCNGG	1 cut(s)	557
SfaNI	GCATC	2 cut(s)	214, 496
SfcI	CTRYAG	2 cut(s)	316, 418
SinI	GGWCC	1 cut(s)	482
Sse9I	AATT	5 cut(s)	94, 344, 523, 578, 603
SspI	AATATT	1 cut(s)	536
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	1 cut(s)	555
TaaI	ACNGT	4 cut(s)	178, 185, 275, 376
TaiI	ACGT	2 cut(s)	441, 466
TaqI	TCGA	1 cut(s)	244
TasI	AATT	5 cut(s)	94, 344, 523, 578, 603
TatI	WGTACW	1 cut(s)	573
Tru1I	TTAA	5 cut(s)	93, 189, 228, 252, 581
Tru9I	TTAA	5 cut(s)	93, 189, 228, 252, 581
TscAI	CASTG	3 cut(s)	190, 475, 484
TseFI	GTSAC	3 cut(s)	269, 311, 667
TseI	GCWGC	2 cut(s)	318, 417
Tsp45I	GTSAC	3 cut(s)	269, 311, 667
TspDTI	ATGAA	4 cut(s)	186, 357, 528, 686
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	3 cut(s)	190, 475, 484
Van91I	CCANNNNNTGG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	482
VspI	ATTAAT	1 cut(s)	581
XagI	CCTNNNNNAGG	1 cut(s)	360
XapI	RAATTY	1 cut(s)	344
XbaI	TCTAGA	1 cut(s)	623
XspI	CTAG	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.