Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009858

Physical Location & Seq

Genomic Coordinates Forward (+)

8674250 .. 8675957

Gene Structure 1708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0097800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAAGCAGTAGAAGCTCAAGAACGGCAGCTGAGCATCAAGGTTCAAGCAGAAGCAAATGAAGCAAACTCCCTACCATATATTCCTAACCAGCTGCCTTGGTGCAGAGGTTTTAACTGGTGGCTTAGAATGTCGATTTATACAGTCTTTGTCCTCGCTGGCCAGGCAATTGCAACACTATTGGGAAGACAGTACTATGACAAAGTTCTAGCTGTGATCTTCTTCCATGAAAAAATGGATGGGCTAAAGGAAATGTCCCTGGTTTTGGCTATGTGGGGTTTTATTTCATATGTTTATCAGCACTACCTCGATGATCGTAAGTCCAAGAGTGAGAAGAAAGATGCCAATGATGAAGTTTCTAAAGCTGTCCCTGTGGAAAACATTAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

130

Amino Acids

15.05

Weight (kDa)

5.67

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	68 - 107	7e-12	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72280
prunus_persica	Prupe.4G145500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027131 RchiOBHm_Chr5g0027151 RchiOBHm_Chr5g0027161 RchiOBHm_Chr5g0027251
rosa_laevigata	RLG00000032999 RLG00000033001
rosa_multiflora	Rmu_sc0000882.1_g000035 Rmu_sc0006065.1_g000015
rosa_rugosa	Rorug05G0097800 Rorug05G0124600
rosa_samantha	Rh5AG191300 Rh5AG191800 Rh5BG189000 Rh5BG189500 Rh5CG210100 Rh5DG190800 Rh5DG191600
rosa_wichuraiana	Rw5G017440 Rw5G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	160
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	2 cut(s)	162, 258
AluBI	AGCT	5 cut(s)	17, 31, 94, 212, 365
AluI	AGCT	5 cut(s)	17, 31, 94, 212, 365
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	28, 94
AseI	ATTAAT	1 cut(s)	384
BalI	TGGCCA	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	40, 81
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	2 cut(s)	164, 260
BfaI	CTAG	1 cut(s)	209
BisI	GCNGC	2 cut(s)	29, 95
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	2 cut(s)	30, 96
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	2 cut(s)	164, 260
BmrFI	CCNGG	2 cut(s)	164, 260
BmsI	GCATC	2 cut(s)	45, 331
BpiI	GAAGAC	1 cut(s)	193
Bpu1102I	GCTNAGC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	98, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	122
BseBI	CCWGG	2 cut(s)	164, 260
BseDI	CCNNGG	2 cut(s)	98, 258
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	40, 81
BsgI	GTGCAG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	241, 353
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmFI	GGGAC	2 cut(s)	241, 353
BsnI	GGCC	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	216, 313
Bsp1720I	GCTNAGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	98, 258
BssMI	GATC	2 cut(s)	216, 313
BssT1I	CCWWGG	1 cut(s)	98
Bst2UI	CCWGG	2 cut(s)	164, 260
Bst4CI	ACNGT	2 cut(s)	145, 192
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	32, 125
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	2 cut(s)	219, 316
BstMBI	GATC	2 cut(s)	216, 313
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 62, 164
BstNI	CCWGG	2 cut(s)	164, 260
BstSCI	CCNGG	2 cut(s)	162, 258
BstV1I	GCAGC	2 cut(s)	40, 81
BstV2I	GAAGAC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	9 cut(s)	17, 31, 94, 124, 162, 212, 244, 269, 365
CviKI_1	RGCY	9 cut(s)	17, 31, 94, 124, 162, 212, 244, 269, 365
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	32, 125
DpnI	GATC	2 cut(s)	218, 315
DpnII	GATC	2 cut(s)	216, 313
EaeI	YGGCCR	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	162, 258
EcoT14I	CCWWGG	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	1 cut(s)	230
FaiI	YATR	8 cut(s)	79, 81, 141, 198, 228, 272, 289, 291
FaqI	GGGAC	2 cut(s)	241, 353
FatI	CATG	1 cut(s)	226
FauNDI	CATATG	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	29, 95
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	29, 95
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	2 cut(s)	29, 95
HaeIII	GGCC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	230
Hpy188III	TCNNGA	1 cut(s)	20
HpyCH4III	ACNGT	2 cut(s)	145, 192
HpyCH4V	TGCA	2 cut(s)	105, 173
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 62, 164
HpyF3I	CTNAG	2 cut(s)	32, 125
Hsp92II	CATG	1 cut(s)	230
Kzo9I	GATC	2 cut(s)	216, 313
LpnPI	CCDG	8 cut(s)	103, 104, 144, 149, 176, 245, 272, 384
Lsp1109I	GCAGC	2 cut(s)	40, 81
LweI	GCATC	2 cut(s)	45, 331
MaeI	CTAG	1 cut(s)	209
MalI	GATC	2 cut(s)	218, 315
MboI	GATC	2 cut(s)	216, 313
MboII	GAAGA	4 cut(s)	198, 211, 214, 346
MfeI	CAATTG	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	162
MnlI	CCTC	3 cut(s)	101, 164, 317
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	2 cut(s)	114, 384
Msp20I	TGGCCA	1 cut(s)	162
MspA1I	CMGCKG	2 cut(s)	31, 94
MspR9I	CCNGG	2 cut(s)	164, 260
MunI	CAATTG	1 cut(s)	168
MvaI	CCWGG	2 cut(s)	164, 260
MwoI	GCNNNNNNNGC	3 cut(s)	14, 62, 164
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	2 cut(s)	216, 313
NlaIII	CATG	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	30, 96
PshBI	ATTAAT	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	162, 258
PspGI	CCWGG	2 cut(s)	162, 258
PvuII	CAGCTG	2 cut(s)	31, 94
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SaqAI	TTAA	2 cut(s)	114, 384
SatI	GCNGC	2 cut(s)	29, 95
Sau3AI	GATC	2 cut(s)	216, 313
ScaI	AGTACT	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	164, 260
SetI	ASST	8 cut(s)	19, 33, 45, 96, 112, 214, 309, 367
SfaNI	GCATC	2 cut(s)	45, 331
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
Sse9I	AATT	1 cut(s)	168
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	162, 258
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	145, 192
TaqI	TCGA	2 cut(s)	134, 309
TasI	AATT	1 cut(s)	168
TatI	WGTACW	1 cut(s)	192
Tru1I	TTAA	2 cut(s)	114, 384
Tru9I	TTAA	2 cut(s)	114, 384
TseI	GCWGC	2 cut(s)	28, 94
TspDTI	ATGAA	4 cut(s)	75, 243, 276, 366
VspI	ATTAAT	1 cut(s)	384
XspI	CTAG	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.