Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006065.1

Orthogroup ID

OG0009858

Physical Location & Seq

Genomic Coordinates Forward (+)

82310 .. 82947

Gene Structure 638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006065.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgtctgttagtccttcgctacagcattggcgcgaagatttggtggaattggggatggtaaaggagaagaatgtgaagagatgggttttagtgggtgctgtggttgtggtgttattagccatagctctcacctctaccagagattttaattctaaactcaacctttctctgtttttcaagaaccccagttcctaccaatgtcctcaggattcaaagaaatacagtggcattgttgaggactgctgttgtgattatgaaacggcggacagtgttaatgcagaggtgttgcatcctctgctacaagagattgttaaaactccgttttttcgatattttaaggtgtgctgcttgagccctcttgatgtttttgctattactgggtttgattcacatttggctatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

134

Amino Acids

15.11

Weight (kDa)

5.87

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72280
prunus_persica	Prupe.4G145500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027131 RchiOBHm_Chr5g0027151 RchiOBHm_Chr5g0027161 RchiOBHm_Chr5g0027251
rosa_laevigata	RLG00000032999 RLG00000033001
rosa_multiflora	Rmu_sc0000882.1_g000035 Rmu_sc0006065.1_g000015
rosa_rugosa	Rorug05G0097800 Rorug05G0124600
rosa_samantha	Rh5AG191300 Rh5AG191800 Rh5BG189000 Rh5BG189500 Rh5CG210100 Rh5DG190800 Rh5DG191600
rosa_wichuraiana	Rw5G017440 Rw5G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	33
AciI	CCGC	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	178, 213
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	121
AxyI	CCTNAGG	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	2 cut(s)	49, 75
BceAI	ACGGC	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	20
BisI	GCNGC	1 cut(s)	346
BlsI	GCNGC	1 cut(s)	347
BmrI	ACTGGG	2 cut(s)	180, 387
BmsI	GCATC	1 cut(s)	298
BmuI	ACTGGG	2 cut(s)	180, 387
BpuEI	CTTGAG	1 cut(s)	370
Bse1I	ACTGG	2 cut(s)	186, 382
Bse21I	CCTNAGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	60, 289
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	2 cut(s)	186, 382
BseXI	GCAGC	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	356
BspACI	CCGC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	186, 382
Bst4CI	ACNGT	2 cut(s)	224, 269
Bst6I	CTCTTC	1 cut(s)	71
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	60, 289
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 351
BstSFI	CTRYAG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	332
Bsu36I	CCTNAGG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	60, 289
BtsIMutI	CAGTG	2 cut(s)	229, 274
CfoI	GCGC	1 cut(s)	33
CviJI	RGCY	4 cut(s)	119, 125, 354, 398
CviKI_1	RGCY	4 cut(s)	119, 125, 354, 398
DdeI	CTNAG	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
EciI	GGCGGA	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	356
Eco81I	CCTNAGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	356
FaiI	YATR	2 cut(s)	122, 255
Fnu4HI	GCNGC	1 cut(s)	346
FokI	GGATG	2 cut(s)	67, 276
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	1 cut(s)	346
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	33
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	2 cut(s)	209, 386
HphI	GGTGA	1 cut(s)	121
Hpy188III	TCNNGA	3 cut(s)	178, 206, 359
HpyAV	CCTTC	1 cut(s)	24
HpyCH4III	ACNGT	2 cut(s)	224, 269
HpyCH4V	TGCA	2 cut(s)	278, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 351
HpyF3I	CTNAG	1 cut(s)	204
HspAI	GCGC	1 cut(s)	31
LpnPI	CCDG	4 cut(s)	151, 191, 199, 363
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	298
MboII	GAAGA	3 cut(s)	47, 79, 88
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	2 cut(s)	47, 148
MnlI	CCTC	6 cut(s)	142, 213, 229, 274, 303, 366
MseI	TTAA	4 cut(s)	147, 273, 312, 336
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	295, 351
PfeI	GAWTC	2 cut(s)	209, 386
PkrI	GCNGC	1 cut(s)	347
SaqAI	TTAA	4 cut(s)	147, 273, 312, 336
SatI	GCNGC	1 cut(s)	346
SduI	GDGCHC	1 cut(s)	356
SetI	ASST	5 cut(s)	127, 134, 165, 285, 342
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	20
SgeI	CNNG	9 cut(s)	44, 150, 190, 198, 218, 314, 361, 371, 390
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	2 cut(s)	47, 148
SsiI	CCGC	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	224, 269
TaqI	TCGA	1 cut(s)	328
TasI	AATT	2 cut(s)	47, 148
TfiI	GAWTC	2 cut(s)	209, 386
Tru1I	TTAA	4 cut(s)	147, 273, 312, 336
Tru9I	TTAA	4 cut(s)	147, 273, 312, 336
TscAI	CASTG	2 cut(s)	229, 274
TseI	GCWGC	1 cut(s)	345
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	229, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.