Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009858

Physical Location & Seq

Genomic Coordinates Reverse (-)

21135309 .. 21137869

Gene Structure 2561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30671

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGTTCTTATTGCGGGATTGCAGCATATGTGAATGCCCAGAAAACGAATTTCCAGAACCTTTTAAAAGGCCCTTGCAGATGTGGTGTGACTGTCCCTTTTGGACTGAAGATGGCATGTTCCTATTGCGGGATTGCAGCATATGTGAATGCCCAGAAAACGAATTTCCAGAACCTTTTAAAAGGCGCTTGCACCGTGGCCTTACATCTGACAGTTTGGTTTGTCAAGAGGAAAAGCTTCAGGGTTCTGTTGACCGCACGTTAGACAGTAGAGTTTTCAGAGGCTGGATTGATACAGATAACCCTTGGATAATTGATGATGAGAATGATAATGGTAGTGAGATGACATATGTGAACCTTCTACTAAACCCTGAACGTTACACTGGCTACACAGGTCCATCGGCTAGAAGGATATGGGATGCTGTTTACTCTGAAAATTGCCCAAAATGTGACATTTGCCAGGAGCAAGGAGTATTATACAAACTAATATCTGGTCTTCACTCCTCCATTTCAATTCATATAGCTGCTGATTATCTTCTGGACAAGATCACAAATCTGTGGGGTCAAAATCTGAAGGTCATGCATGGTCGTGTTTTAAAATATCCAGATCGTATGAGCAGGCTTGAGTATGATACTGATAATCATGAGGAAGACCTGCAAACACAGTCTTTGATGAGGCAGCTACTCTATAATCCTAAACTCCAAGCTGCATGTCCTCTACCGTTTGATGAAGCAAAGCTCTGGAAAGGTCAAAGTGGGCCACAGTTGAAGCAGCAAATTCAAAAGCAATTCAGAAACATTAGAGCATTAATGGATTGTGTGGGATGTGAAAAGTGTTGGCTCTGGGGAAAGCTTCAAGTTCTTGGTCTTGGTACTGCATTGAAGATCCTCTTTTCTGTTGATGGTAAAAATAATCAAGATCAACCTTTGCAGCTGCAACGAAATGAAGTGATTGCTCTTGTAAATCTGCTAAATCGACTTTCTGAATCTGTCGAAACTGTTCGTCAAAGTGGTGATTCAATCAGGAAAGTAGCGGAAGGAGGATGTGTTATTGCCTTCCATACGAACAATCAGCACGTTACAAAGATTATGGGAGGCTGTCATCCCGATCAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

371

Amino Acids

42.64

Weight (kDa)

5.4

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERO1	PF04137	25 - 207	1.9e-44	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
ERO1	PF04137	205 - 332	4.5e-42	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72280
prunus_persica	Prupe.4G145500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027131 RchiOBHm_Chr5g0027151 RchiOBHm_Chr5g0027161 RchiOBHm_Chr5g0027251
rosa_laevigata	RLG00000032999 RLG00000033001
rosa_multiflora	Rmu_sc0000882.1_g000035 Rmu_sc0006065.1_g000015
rosa_rugosa	Rorug05G0097800 Rorug05G0124600
rosa_samantha	Rh5AG191300 Rh5AG191800 Rh5BG189000 Rh5BG189500 Rh5CG210100 Rh5DG190800 Rh5DG191600
rosa_wichuraiana	Rw5G017440 Rw5G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	660
AciI	CCGC	4 cut(s)	13, 127, 253, 1031
AclI	AACGTT	1 cut(s)	373
AclWI	GGATC	1 cut(s)	877
AcsI	RAATTY	3 cut(s)	47, 161, 774
AcuI	CTGAAG	3 cut(s)	126, 221, 590
AfaI	GTAC	1 cut(s)	871
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	6 cut(s)	510, 766, 779, 854, 880, 1017
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	7 cut(s)	235, 521, 679, 704, 736, 850, 931
AluI	AGCT	7 cut(s)	235, 521, 679, 704, 736, 850, 931
AlwI	GGATC	1 cut(s)	877
AlwNI	CAGNNNCTG	1 cut(s)	282
AoxI	GGCC	3 cut(s)	68, 196, 755
ApeKI	GCWGC	8 cut(s)	21, 135, 521, 676, 704, 769, 928, 931
ApoI	RAATTY	3 cut(s)	47, 161, 774
AseI	ATTAAT	1 cut(s)	806
Asp700I	GAANNNNTTC	2 cut(s)	234, 996
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	3 cut(s)	69, 392, 755
AsuHPI	GGTGA	1 cut(s)	1022
AvaII	GGWCC	1 cut(s)	392
BbsI	GAAGAC	2 cut(s)	485, 654
BbvI	GCAGC	8 cut(s)	33, 147, 508, 688, 691, 781, 918, 940
BccI	CCATC	3 cut(s)	104, 403, 893
BciT130I	CCWGG	1 cut(s)	458
BfaI	CTAG	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	187
BfuAI	ACCTGC	1 cut(s)	660
BisI	GCNGC	8 cut(s)	22, 136, 522, 677, 705, 770, 929, 932
BlsI	GCNGC	8 cut(s)	23, 137, 523, 678, 706, 771, 930, 933
Bme1390I	CCNGG	1 cut(s)	458
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	3 cut(s)	69, 392, 755
BmrFI	CCNGG	1 cut(s)	458
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	2 cut(s)	485, 654
BpuEI	CTTGAG	1 cut(s)	641
BsaJI	CCNNGG	2 cut(s)	193, 302
BsaXI	ACNNNNNCTCC	2 cut(s)	1029, 1059
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	2 cut(s)	193, 302
BseGI	GGATG	4 cut(s)	421, 827, 1046, 1099
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	490
BseXI	GCAGC	8 cut(s)	33, 147, 508, 688, 691, 781, 918, 940
BshFI	GGCC	3 cut(s)	70, 198, 757
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	78
BsmI	GAATGC	2 cut(s)	38, 152
BsnI	GGCC	3 cut(s)	70, 198, 757
Bsp143I	GATC	5 cut(s)	543, 604, 882, 916, 1105
BspACI	CCGC	4 cut(s)	13, 127, 253, 1031
BspANI	GGCC	3 cut(s)	70, 198, 757
BspHI	TCATGA	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	660
BspPI	GGATC	1 cut(s)	877
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	193, 302
BssMI	GATC	5 cut(s)	543, 604, 882, 916, 1105
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	8 cut(s)	92, 194, 212, 266, 663, 720, 762, 997
BstC8I	GCNNGC	2 cut(s)	188, 617
BstDEI	CTNAG	1 cut(s)	1113
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	4 cut(s)	421, 827, 1046, 1099
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	5 cut(s)	546, 607, 885, 919, 1108
BstMBI	GATC	5 cut(s)	543, 604, 882, 916, 1105
BstNI	CCWGG	1 cut(s)	458
BstNSI	RCATGY	2 cut(s)	118, 711
BstSCI	CCNGG	1 cut(s)	456
BstV1I	GCAGC	8 cut(s)	33, 147, 508, 688, 691, 781, 918, 940
BstV2I	GAAGAC	2 cut(s)	485, 654
BstX2I	RGATCY	1 cut(s)	882
BstYI	RGATCY	1 cut(s)	882
BsuRI	GGCC	3 cut(s)	70, 198, 757
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	4 cut(s)	421, 827, 1046, 1099
BtsIMutI	CAGTG	1 cut(s)	378
BveI	ACCTGC	1 cut(s)	660
Cac8I	GCNNGC	2 cut(s)	188, 617
CaiI	CAGNNNCTG	1 cut(s)	282
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	3 cut(s)	69, 392, 755
Csp6I	GTAC	1 cut(s)	870
CviAII	CATG	5 cut(s)	115, 577, 581, 641, 708
CviQI	GTAC	1 cut(s)	870
DdeI	CTNAG	1 cut(s)	1113
DpnI	GATC	5 cut(s)	545, 606, 884, 918, 1107
DpnII	GATC	5 cut(s)	543, 604, 882, 916, 1105
DraI	TTTAAA	3 cut(s)	64, 178, 594
Eco130I	CCWWGG	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	392
Eco57I	CTGAAG	3 cut(s)	126, 221, 590
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	302
EcoT22I	ATGCAT	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	5 cut(s)	118, 580, 584, 644, 711
FalI	AAGNNNNNCTT	2 cut(s)	872, 904
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	5 cut(s)	114, 576, 580, 640, 707
FauI	CCCGC	2 cut(s)	6, 120
FauNDI	CATATG	3 cut(s)	26, 140, 346
Fnu4HI	GCNGC	8 cut(s)	22, 136, 522, 677, 705, 770, 929, 932
FokI	GGATG	4 cut(s)	428, 834, 1053, 1086
Fsp4HI	GCNGC	8 cut(s)	22, 136, 522, 677, 705, 770, 929, 932
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	8 cut(s)	22, 136, 522, 677, 705, 770, 929, 932
HaeII	RGCGCY	1 cut(s)	187
HaeIII	GGCC	3 cut(s)	70, 198, 757
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	5 cut(s)	118, 580, 584, 644, 711
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	2 cut(s)	233, 848
HinfI	GANTC	2 cut(s)	983, 1013
HphI	GGTGA	1 cut(s)	1022
Hpy166II	GTNNAC	3 cut(s)	250, 352, 424
Hpy188I	TCNGA	6 cut(s)	208, 278, 430, 570, 791, 982
Hpy8I	GTNNAC	3 cut(s)	250, 352, 424
HpyAV	CCTTC	5 cut(s)	365, 399, 565, 1028, 1063
HpyCH4III	ACNGT	8 cut(s)	92, 194, 212, 266, 663, 720, 762, 997
HpyCH4IV	ACGT	3 cut(s)	257, 373, 1074
HpyF3I	CTNAG	1 cut(s)	1113
HpySE526I	ACGT	3 cut(s)	257, 373, 1074
Hsp92II	CATG	5 cut(s)	118, 580, 584, 644, 711
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	5 cut(s)	543, 604, 882, 916, 1105
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	8 cut(s)	33, 147, 508, 688, 691, 781, 918, 940
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	3 cut(s)	257, 373, 1074
MaeIII	GTNAC	4 cut(s)	86, 374, 446, 1075
MalI	GATC	5 cut(s)	545, 606, 884, 918, 1107
MboI	GATC	5 cut(s)	543, 604, 882, 916, 1105
MboII	GAAGA	5 cut(s)	119, 485, 524, 659, 892
MflI	RGATCY	1 cut(s)	882
MluCI	AATT	7 cut(s)	47, 161, 309, 433, 510, 774, 785
MnlI	CCTC	9 cut(s)	220, 272, 511, 637, 666, 723, 896, 1031, 1085
Mph1103I	ATGCAT	1 cut(s)	582
MroXI	GAANNNNTTC	2 cut(s)	234, 996
MseI	TTAA	4 cut(s)	63, 177, 593, 806
MslI	CAYNNNNRTG	1 cut(s)	585
MspA1I	CMGCKG	1 cut(s)	931
MspR9I	CCNGG	1 cut(s)	458
Mva1269I	GAATGC	2 cut(s)	38, 152
MvaI	CCWGG	1 cut(s)	458
NdeI	CATATG	3 cut(s)	26, 140, 346
NdeII	GATC	5 cut(s)	543, 604, 882, 916, 1105
NlaIII	CATG	5 cut(s)	118, 580, 584, 644, 711
NmuCI	GTSAC	2 cut(s)	86, 446
NsiI	ATGCAT	1 cut(s)	582
NspI	RCATGY	2 cut(s)	118, 711
PagI	TCATGA	1 cut(s)	640
PctI	GAATGC	2 cut(s)	38, 152
PdmI	GAANNNNTTC	2 cut(s)	234, 996
PfeI	GAWTC	2 cut(s)	983, 1013
PkrI	GCNGC	8 cut(s)	23, 137, 523, 678, 706, 771, 930, 933
PshBI	ATTAAT	1 cut(s)	806
Psp1406I	AACGTT	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	456
PspPI	GGNCC	3 cut(s)	69, 392, 755
PstNI	CAGNNNCTG	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	882
PvuII	CAGCTG	1 cut(s)	931
RsaI	GTAC	1 cut(s)	871
RsaNI	GTAC	1 cut(s)	870
RseI	CAYNNNNRTG	1 cut(s)	585
SaqAI	TTAA	4 cut(s)	63, 177, 593, 806
SatI	GCNGC	8 cut(s)	22, 136, 522, 677, 705, 770, 929, 932
Sau3AI	GATC	5 cut(s)	543, 604, 882, 916, 1105
Sau96I	GGNCC	3 cut(s)	69, 392, 755
ScrFI	CCNGG	1 cut(s)	458
SfaNI	GCATC	1 cut(s)	406
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	7 cut(s)	47, 161, 309, 433, 510, 774, 785
SsiI	CCGC	4 cut(s)	13, 127, 253, 1031
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	8 cut(s)	92, 194, 212, 266, 663, 720, 762, 997
TaiI	ACGT	3 cut(s)	260, 376, 1077
TaqI	TCGA	2 cut(s)	973, 990
TasI	AATT	7 cut(s)	47, 161, 309, 433, 510, 774, 785
TfiI	GAWTC	2 cut(s)	983, 1013
Tru1I	TTAA	4 cut(s)	63, 177, 593, 806
Tru9I	TTAA	4 cut(s)	63, 177, 593, 806
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	2 cut(s)	86, 446
TseI	GCWGC	8 cut(s)	21, 135, 521, 676, 704, 769, 928, 931
Tsp45I	GTSAC	2 cut(s)	86, 446
TspDTI	ATGAA	3 cut(s)	503, 741, 957
TspRI	CASTG	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	392
VspI	ATTAAT	1 cut(s)	806
XapI	RAATTY	3 cut(s)	47, 161, 774
XceI	RCATGY	2 cut(s)	118, 711
XmnI	GAANNNNTTC	2 cut(s)	234, 996
XspI	CTAG	1 cut(s)	402
Zsp2I	ATGCAT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.