Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009858

Physical Location & Seq

Genomic Coordinates Reverse (-)

21140035 .. 21181525

Gene Structure 41491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG190800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGTGAAGGAGAAGAATGTGAAGAGATGGGTTTTAGTGGGTGCTGTGGTTGTGGTCTTATTAGCCATAGCTCTCACCTCTACCAGAGATTTTAATTCTAAACTCAACCTTTCTCTGTTTTTCAAGAATCCCAGTTCCTGCCAATGTCCTCAGGATTCAAAGAAATACAGTGGCATTGATGAGGACTGCTGTTGTGATTATGAAACGGTGGACAGTGTTAATGCAGAGGTGTTGCATCCTCTGCTACAAGAGATTGTTAAAACTCCGTTTTTTCGATATTTTAAGGCCAAGCTGTGGTGTGACTGTCCCTTCTGGACTGAAGATGGTATGTGCCTCCTGCGTGACTGCAGCGTCTGCGAATGCCCAGAAAATGAATTTCCGGAACCTTTCAAGAGGCCCTTTCACGGTGGCCTTCCATCCGACACTTTGGTATGTCAAGATGATAAGCTGCAGGGGTCTGTTGACCGCACTCTAGACGGTAGAGCATTCAGAGGCTGGATTGAGACAGATAATCCTTGGACAAATGATGACGAGACTGATAATGATTCATCTCAGGACATTTGCCAGGAGCAAAGAGTATTGTACAAATTAATATCGGGTCTTCACTCGTCAATTTCAATCCACATAGCTGCTGATTATCTTCTAGACAAGATTACCAATCTGTGGGGTCAAAACATGGAATTGATGCATGATCGCGTTCTAAAATATCCAGATCGTGTTCAGAATTTGTACTTCGCATTCCTCTTTGTTCTCCGGGCAGTGACAAAAGCTGCAGATTACTTAGAGCAGGCTGAGTATGATACAGGTAATCATGAGGAAGACCTGAGAACACAGTCTTTGATGAGGCAGCTACTTTACAATCCTAAACTCCAAGCTGCATGTCCCTTACCGTTTGATGAAGCAAAGCTCTGGAAGGGTCAGAGTGGACCACAATTGAAGCAACAAATTCAAAAGAAATTCAGAAACATCAGTGCATTAATGGATTGTGTGGGATGTGAGAAATGTCGGCTCTGGGGAAAGCTTCAAGTTCTTGGTCTTGGTACTGCATTGAAGATCCTCTTTTCTGTTGATGGTAAAAATCATCAAGATCAACCTCTGCAGCTGCAACGAAATGAAGTGATAGCTCTCGTAAATCTGCTAAATCGACTCTCTGAATCTGTCAAATATGCTTGTCAAAGCGGATATTCAATCAAGAAAGTAGTGGAAGGAGGACGTGTTGCTGAACCTATTTCTATACAAAACAATCAGTACATTACAAAGAATATGGGAGGCGGTGATCCCGATCACGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

430

Amino Acids

48.91

Weight (kDa)

5.61

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERO1	PF04137	78 - 135	2.7e-16	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
ERO1	PF04137	175 - 389	8e-81	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72280
prunus_persica	Prupe.4G145500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027131 RchiOBHm_Chr5g0027151 RchiOBHm_Chr5g0027161 RchiOBHm_Chr5g0027251
rosa_laevigata	RLG00000032999 RLG00000033001
rosa_multiflora	Rmu_sc0000882.1_g000035 Rmu_sc0006065.1_g000015
rosa_rugosa	Rorug05G0097800 Rorug05G0124600
rosa_samantha	Rh5AG191300 Rh5AG191800 Rh5BG189000 Rh5BG189500 Rh5CG210100 Rh5DG190800 Rh5DG191600
rosa_wichuraiana	Rw5G017440 Rw5G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AccB7I	CCANNNNNTGG	2 cut(s)	294, 663
AccII	CGCG	1 cut(s)	696
AccIII	TCCGGA	1 cut(s)	379
AciI	CCGC	3 cut(s)	466, 1179, 1272
AclWI	GGATC	2 cut(s)	1048, 1271
AcsI	RAATTY	4 cut(s)	374, 724, 945, 956
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	4 cut(s)	584, 731, 1042, 1250
AfiI	CCNNNNNNNGG	3 cut(s)	294, 404, 663
AflIII	ACRYGT	1 cut(s)	1213
AgsI	TTSAA	9 cut(s)	124, 159, 391, 618, 937, 950, 1025, 1051, 1188
AjiI	CACGTC	1 cut(s)	1214
AjnI	CCWGG	1 cut(s)	564
Alw26I	GTCTC	2 cut(s)	497, 527
AlwI	GGATC	2 cut(s)	1048, 1271
AlwNI	CAGNNNCTG	3 cut(s)	138, 354, 495
Aor13HI	TCCGGA	1 cut(s)	379
AoxI	GGCC	3 cut(s)	285, 395, 409
ApeKI	GCWGC	8 cut(s)	348, 448, 629, 770, 847, 875, 1099, 1102
ApoI	RAATTY	4 cut(s)	374, 724, 945, 956
AseI	ATTAAT	2 cut(s)	590, 977
AspS9I	GGNCC	2 cut(s)	396, 926
AsuC2I	CCSGG	1 cut(s)	755
AsuHPI	GGTGA	3 cut(s)	16, 67, 1286
AvaII	GGWCC	1 cut(s)	926
AxyI	CCTNAGG	1 cut(s)	150
BbsI	GAAGAC	2 cut(s)	593, 825
BbvI	GCAGC	8 cut(s)	360, 435, 616, 757, 859, 862, 1089, 1111
BccI	CCATC	4 cut(s)	21, 317, 424, 1064
BciT130I	CCWGG	1 cut(s)	566
BcnI	CCSGG	1 cut(s)	755
BcoDI	GTCTC	2 cut(s)	497, 527
BfaI	CTAG	2 cut(s)	473, 644
BfmI	CTRYAG	4 cut(s)	346, 449, 771, 1097
BisI	GCNGC	8 cut(s)	349, 449, 630, 771, 848, 876, 1100, 1103
BlsI	GCNGC	8 cut(s)	350, 450, 631, 772, 849, 877, 1101, 1104
Bme1390I	CCNGG	2 cut(s)	566, 755
Bme18I	GGWCC	1 cut(s)	926
BmgBI	CACGTC	1 cut(s)	1214
BmgT120I	GGNCC	2 cut(s)	396, 926
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	566, 755
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	2 cut(s)	244, 675
BmuI	ACTGGG	1 cut(s)	126
BpiI	GAAGAC	2 cut(s)	593, 825
BpuMI	CCSGG	1 cut(s)	755
BsaBI	GATNNNNATC	1 cut(s)	1281
BsaJI	CCNNGG	1 cut(s)	515
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	1200, 1230
Bsc4I	CCNNNNNNNGG	3 cut(s)	294, 404, 663
Bse1I	ACTGG	1 cut(s)	132
Bse21I	CCTNAGG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	1281
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	1 cut(s)	515
BseGI	GGATG	3 cut(s)	235, 416, 998
BseJI	GATNNNNATC	1 cut(s)	1281
BseLI	CCNNNNNNNGG	3 cut(s)	294, 404, 663
BseMII	CTCAG	4 cut(s)	164, 566, 783, 815
BseNI	ACTGG	1 cut(s)	132
BseXI	GCAGC	8 cut(s)	360, 435, 616, 757, 859, 862, 1089, 1111
Bsh1236I	CGCG	1 cut(s)	696
BshFI	GGCC	3 cut(s)	287, 397, 411
BsiSI	CCGG	2 cut(s)	380, 754
BslFI	GGGAC	2 cut(s)	291, 867
BslI	CCNNNNNNNGG	3 cut(s)	294, 404, 663
BsmAI	GTCTC	2 cut(s)	497, 527
BsmFI	GGGAC	2 cut(s)	291, 867
BsmI	GAATGC	3 cut(s)	365, 485, 737
BsnI	GGCC	3 cut(s)	287, 397, 411
Bsp13I	TCCGGA	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	6 cut(s)	691, 712, 1053, 1087, 1276, 1282
BspACI	CCGC	3 cut(s)	466, 1179, 1272
BspANI	GGCC	3 cut(s)	287, 397, 411
BspCNI	CTCAG	4 cut(s)	163, 565, 784, 816
BspEI	TCCGGA	1 cut(s)	379
BspFNI	CGCG	1 cut(s)	696
BspHI	TCATGA	1 cut(s)	811
BspLI	GGNNCC	1 cut(s)	384
BspMAI	CTGCAG	4 cut(s)	350, 453, 775, 1101
BspPI	GGATC	2 cut(s)	1048, 1271
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	515
BssMI	GATC	6 cut(s)	691, 712, 1053, 1087, 1276, 1282
BssT1I	CCWWGG	1 cut(s)	515
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	8 cut(s)	170, 208, 215, 305, 407, 479, 834, 891
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	2 cut(s)	241, 354
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	1 cut(s)	789
BstDEI	CTNAG	6 cut(s)	150, 552, 781, 792, 824, 1290
BstF5I	GGATG	3 cut(s)	235, 416, 998
BstFNI	CGCG	1 cut(s)	696
BstKTI	GATC	6 cut(s)	694, 715, 1056, 1090, 1279, 1285
BstMAI	GTCTC	2 cut(s)	497, 527
BstMBI	GATC	6 cut(s)	691, 712, 1053, 1087, 1276, 1282
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 354
BstNI	CCWGG	1 cut(s)	566
BstNSI	RCATGY	1 cut(s)	882
BstSCI	CCNGG	2 cut(s)	564, 753
BstSFI	CTRYAG	4 cut(s)	346, 449, 771, 1097
BstUI	CGCG	1 cut(s)	696
BstV1I	GCAGC	8 cut(s)	360, 435, 616, 757, 859, 862, 1089, 1111
BstV2I	GAAGAC	2 cut(s)	593, 825
BstX2I	RGATCY	1 cut(s)	1053
BstYI	RGATCY	1 cut(s)	1053
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	287, 397, 411
BtrI	CACGTC	1 cut(s)	1214
BtsCI	GGATG	3 cut(s)	235, 416, 998
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	4 cut(s)	175, 220, 765, 976
Cac8I	GCNNGC	1 cut(s)	789
CaiI	CAGNNNCTG	3 cut(s)	138, 354, 495
CciI	TCATGA	1 cut(s)	811
Cfr13I	GGNCC	2 cut(s)	396, 926
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	4 cut(s)	583, 730, 1041, 1249
CviAII	CATG	4 cut(s)	676, 689, 812, 879
CviQI	GTAC	4 cut(s)	583, 730, 1041, 1249
DdeI	CTNAG	6 cut(s)	150, 552, 781, 792, 824, 1290
DpnI	GATC	6 cut(s)	693, 714, 1055, 1089, 1278, 1284
DpnII	GATC	6 cut(s)	691, 712, 1053, 1087, 1276, 1282
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	515
Eco47I	GGWCC	1 cut(s)	926
Eco57I	CTGAAG	1 cut(s)	339
Eco81I	CCTNAGG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	564
EcoT14I	CCWWGG	1 cut(s)	515
EcoT22I	ATGCAT	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	515
FaeI	CATG	4 cut(s)	679, 692, 815, 882
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 1043, 1075
FaqI	GGGAC	2 cut(s)	291, 867
FatI	CATG	4 cut(s)	675, 688, 811, 878
Fnu4HI	GCNGC	8 cut(s)	349, 449, 630, 771, 848, 876, 1100, 1103
FokI	GGATG	3 cut(s)	222, 403, 1005
Fsp4HI	GCNGC	8 cut(s)	349, 449, 630, 771, 848, 876, 1100, 1103
FspBI	CTAG	2 cut(s)	473, 644
GluI	GCNGC	8 cut(s)	349, 449, 630, 771, 848, 876, 1100, 1103
HaeIII	GGCC	3 cut(s)	287, 397, 411
HapII	CCGG	2 cut(s)	380, 754
HgaI	GACGC	1 cut(s)	340
Hin1II	CATG	4 cut(s)	679, 692, 815, 882
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	1019
HinfI	GANTC	5 cut(s)	127, 155, 545, 1146, 1154
HpaII	CCGG	2 cut(s)	380, 754
HphI	GGTGA	3 cut(s)	16, 67, 1286
Hpy166II	GTNNAC	3 cut(s)	211, 463, 926
Hpy188I	TCNGA	6 cut(s)	421, 491, 723, 921, 962, 1153
Hpy8I	GTNNAC	3 cut(s)	211, 463, 926
HpyAV	CCTTC	4 cut(s)	319, 422, 907, 1199
HpyCH4III	ACNGT	8 cut(s)	170, 208, 215, 305, 407, 479, 834, 891
HpyCH4IV	ACGT	1 cut(s)	1213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 354
HpyF3I	CTNAG	6 cut(s)	150, 552, 781, 792, 824, 1290
HpySE526I	ACGT	1 cut(s)	1213
Hsp92II	CATG	4 cut(s)	679, 692, 815, 882
Kpn2I	TCCGGA	1 cut(s)	379
Kzo9I	GATC	6 cut(s)	691, 712, 1053, 1087, 1276, 1282
LmnI	GCTCC	1 cut(s)	568
Lsp1109I	GCAGC	8 cut(s)	360, 435, 616, 757, 859, 862, 1089, 1111
LweI	GCATC	2 cut(s)	244, 675
MaeI	CTAG	2 cut(s)	473, 644
MaeII	ACGT	1 cut(s)	1213
MaeIII	GTNAC	3 cut(s)	299, 341, 760
MalI	GATC	6 cut(s)	693, 714, 1055, 1089, 1278, 1284
MboI	GATC	6 cut(s)	691, 712, 1053, 1087, 1276, 1282
MboII	GAAGA	7 cut(s)	25, 34, 332, 593, 632, 830, 1063
MfeI	CAATTG	1 cut(s)	932
MflI	RGATCY	1 cut(s)	1053
MluCI	AATT	9 cut(s)	94, 374, 587, 612, 680, 724, 932, 945, 956
MlyI	GAGTC	1 cut(s)	1140
MmeI	TCCRAC	1 cut(s)	444
Mph1103I	ATGCAT	1 cut(s)	690
MroI	TCCGGA	1 cut(s)	379
MseI	TTAA	6 cut(s)	93, 219, 258, 282, 590, 977
MspA1I	CMGCKG	1 cut(s)	1102
MspI	CCGG	2 cut(s)	380, 754
MspR9I	CCNGG	2 cut(s)	566, 755
MunI	CAATTG	1 cut(s)	932
Mva1269I	GAATGC	3 cut(s)	365, 485, 737
MvaI	CCWGG	1 cut(s)	566
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	2 cut(s)	241, 354
NciI	CCSGG	1 cut(s)	755
NdeII	GATC	6 cut(s)	691, 712, 1053, 1087, 1276, 1282
NlaIII	CATG	4 cut(s)	679, 692, 815, 882
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	3 cut(s)	299, 341, 760
NsiI	ATGCAT	1 cut(s)	690
NspI	RCATGY	1 cut(s)	882
PagI	TCATGA	1 cut(s)	811
PctI	GAATGC	3 cut(s)	365, 485, 737
PfeI	GAWTC	4 cut(s)	127, 155, 545, 1154
PflMI	CCANNNNNTGG	2 cut(s)	294, 663
PkrI	GCNGC	8 cut(s)	350, 450, 631, 772, 849, 877, 1101, 1104
PleI	GAGTC	1 cut(s)	1140
PpsI	GAGTC	1 cut(s)	1140
PshBI	ATTAAT	2 cut(s)	590, 977
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	2 cut(s)	396, 926
PstI	CTGCAG	4 cut(s)	350, 453, 775, 1101
PstNI	CAGNNNCTG	3 cut(s)	138, 354, 495
PsuI	RGATCY	1 cut(s)	1053
PvuII	CAGCTG	1 cut(s)	1102
RsaI	GTAC	4 cut(s)	584, 731, 1042, 1250
RsaNI	GTAC	4 cut(s)	583, 730, 1041, 1249
SaqAI	TTAA	6 cut(s)	93, 219, 258, 282, 590, 977
SatI	GCNGC	8 cut(s)	349, 449, 630, 771, 848, 876, 1100, 1103
Sau3AI	GATC	6 cut(s)	691, 712, 1053, 1087, 1276, 1282
Sau96I	GGNCC	2 cut(s)	396, 926
SchI	GAGTC	1 cut(s)	1140
ScrFI	CCNGG	2 cut(s)	566, 755
SfaNI	GCATC	2 cut(s)	244, 675
SfcI	CTRYAG	4 cut(s)	346, 449, 771, 1097
SinI	GGWCC	1 cut(s)	926
Sse9I	AATT	9 cut(s)	94, 374, 587, 612, 680, 724, 932, 945, 956
SsiI	CCGC	3 cut(s)	466, 1179, 1272
SspMI	CTAG	2 cut(s)	473, 644
StyD4I	CCNGG	2 cut(s)	564, 753
StyI	CCWWGG	1 cut(s)	515
TaaI	ACNGT	8 cut(s)	170, 208, 215, 305, 407, 479, 834, 891
TaiI	ACGT	1 cut(s)	1216
TaqI	TCGA	2 cut(s)	274, 1144
TasI	AATT	9 cut(s)	94, 374, 587, 612, 680, 724, 932, 945, 956
TatI	WGTACW	3 cut(s)	582, 729, 1248
TfiI	GAWTC	4 cut(s)	127, 155, 545, 1154
Tru1I	TTAA	6 cut(s)	93, 219, 258, 282, 590, 977
Tru9I	TTAA	6 cut(s)	93, 219, 258, 282, 590, 977
TscAI	CASTG	4 cut(s)	175, 220, 765, 976
TseFI	GTSAC	3 cut(s)	299, 341, 760
TseI	GCWGC	8 cut(s)	348, 448, 629, 770, 847, 875, 1099, 1102
Tsp45I	GTSAC	3 cut(s)	299, 341, 760
TspDTI	ATGAA	5 cut(s)	216, 387, 537, 912, 1128
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	4 cut(s)	175, 220, 765, 976
Van91I	CCANNNNNTGG	2 cut(s)	294, 663
VpaK11BI	GGWCC	1 cut(s)	926
VspI	ATTAAT	2 cut(s)	590, 977
XapI	RAATTY	4 cut(s)	374, 724, 945, 956
XbaI	TCTAGA	2 cut(s)	472, 643
XceI	RCATGY	1 cut(s)	882
XspI	CTAG	2 cut(s)	473, 644
Zsp2I	ATGCAT	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.