Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009858

Physical Location & Seq

Genomic Coordinates Reverse (-)

21306107 .. 21316081

Gene Structure 9975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG191600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTCTCTTAGTCCTTCGCTACAGCATTGGCGCGAAGATTTGGTGGAATTGGAGATGGTGAAGGAGAAGAATGTGAAGAGATGGGTTGTGGTCTTAATAGCCATAGCTCTCACCTCTACCAGTAGACTCAACCTCTCTCTGTTTTTCAAGAATCCCAGTTCCTGCCAATGTCCTCAGGATTCAAAGAAATACAGTGGCATTGTTGAGGACTGCTGTTGTGATTATGAAACGGTGGACAGTGTTAATGCAGAGGTGTTGCATCCTCTGCTACAAGAGATTGTTAAAACTCCGTTTTTTCGATATTTTAAGGCCAAGCTGTGGTGTGACTGTCCCTTCTGGACTGAAGATGGTATGTGCCTCCTGCGTGACTGCAGCGTCTGCGATTGCCCAGAAAATGAATTTCCGGAACCTTTCAAGAGGCCCTTTCACCGTGACCTTCCATCCGACAGTTTGGTTTGTCAAAATGATAAGCTGCAGGGGTCTGTTGACCGCACTCTAGACAGTAGAGCTTTCAGAGGCTGGATCGAGACAGATAACCCTTGGACAAATGATGATGAGACTGATAATGATTCATCTCAGGACATTTGCCAGGAGCAAAGAGTATTGTACAAATTAATATCGGGTCTTCACTCATCAATTTCAATACACATAGCTGCTGATTATCTTCTAGACAAGATTACCAATCTGTGGGGTCAAAACATGGAATTGATGCATGATCGCGTTTTAAAATATCCAGATCGTGTTCAGAATTTGTACTTCGCATTCCTCTTTGTTCTCCGGGCAGTGACAAAAGCTGCAGATTACTTAGAGCAGGCTGAGTATGATACAGGTAATCATGAGGAAGACCTGAGAACAGAGTCTTTGATGAGGCAGCTACTTTACAATCCTAAACTCCAAGCTGCATGTCCCCTACCGTTTGATGAAGCAAAGCTCTGGAAAGGTCAGAGTGGACAACAATTGAAGCAACAAATTCAAAAGAAATTCAGAAACATTAGTGCATTAATGGATTGTGTGGGATGTGAGAAATGTCGGCTCTGGGGAAAGCTTCAAGTTCTTGGTCTTGGTACTGCATTGAAGATCCTCTTTTCTGTTGATGGTAAAAATCATCAAGATCAACCTATTACGAAAGAGCTGATGACCACAACTAGAGCAACAGAATCAAAAGCAACTCCAGATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

393

Amino Acids

45.25

Weight (kDa)

5.33

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERO1	PF04137	86 - 189	8.9e-17	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
ERO1	PF04137	183 - 372	8e-70	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72280
prunus_persica	Prupe.4G145500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027131 RchiOBHm_Chr5g0027151 RchiOBHm_Chr5g0027161 RchiOBHm_Chr5g0027251
rosa_laevigata	RLG00000032999 RLG00000033001
rosa_multiflora	Rmu_sc0000882.1_g000035 Rmu_sc0006065.1_g000015
rosa_rugosa	Rorug05G0097800 Rorug05G0124600
rosa_samantha	Rh5AG191300 Rh5AG191800 Rh5BG189000 Rh5BG189500 Rh5CG210100 Rh5DG190800 Rh5DG191600
rosa_wichuraiana	Rw5G017440 Rw5G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AccB7I	CCANNNNNTGG	2 cut(s)	318, 687
AccI	GTMKAC	1 cut(s)	124
AccII	CGCG	2 cut(s)	33, 720
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	1 cut(s)	490
AclWI	GGATC	2 cut(s)	530, 1072
AcsI	RAATTY	4 cut(s)	398, 748, 969, 980
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	3 cut(s)	608, 755, 1066
AfiI	CCNNNNNNNGG	2 cut(s)	318, 687
AgsI	TTSAA	8 cut(s)	148, 183, 415, 642, 961, 974, 1049, 1075
AjnI	CCWGG	1 cut(s)	588
Alw26I	GTCTC	3 cut(s)	9, 521, 551
AlwI	GGATC	2 cut(s)	530, 1072
AlwNI	CAGNNNCTG	3 cut(s)	162, 378, 519
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	2 cut(s)	309, 419
ApeKI	GCWGC	6 cut(s)	372, 472, 653, 794, 871, 899
ApoI	RAATTY	4 cut(s)	398, 748, 969, 980
AseI	ATTAAT	2 cut(s)	614, 1001
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	420
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	3 cut(s)	70, 103, 419
AxyI	CCTNAGG	1 cut(s)	174
BbsI	GAAGAC	2 cut(s)	617, 849
BbvI	GCAGC	6 cut(s)	384, 459, 640, 781, 883, 886
BccI	CCATC	5 cut(s)	49, 75, 341, 448, 1088
BciT130I	CCWGG	1 cut(s)	590
BcnI	CCSGG	1 cut(s)	779
BcoDI	GTCTC	3 cut(s)	9, 521, 551
BfaI	CTAG	3 cut(s)	497, 668, 1146
BfmI	CTRYAG	4 cut(s)	20, 370, 473, 795
BisI	GCNGC	6 cut(s)	373, 473, 654, 795, 872, 900
BlsI	GCNGC	6 cut(s)	374, 474, 655, 796, 873, 901
Bme1390I	CCNGG	2 cut(s)	590, 779
BmgT120I	GGNCC	1 cut(s)	420
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	2 cut(s)	590, 779
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	268, 699
BmuI	ACTGGG	1 cut(s)	150
BpiI	GAAGAC	2 cut(s)	617, 849
BpmI	CTGGAG	1 cut(s)	1155
BpuMI	CCSGG	1 cut(s)	779
BsaJI	CCNNGG	1 cut(s)	539
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 687
Bse1I	ACTGG	2 cut(s)	120, 156
Bse21I	CCTNAGG	1 cut(s)	174
BseAI	TCCGGA	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	590
BseDI	CCNNGG	1 cut(s)	539
BseGI	GGATG	3 cut(s)	259, 440, 1022
BseLI	CCNNNNNNNGG	2 cut(s)	318, 687
BseMII	CTCAG	4 cut(s)	188, 590, 807, 839
BseNI	ACTGG	2 cut(s)	120, 156
BseXI	GCAGC	6 cut(s)	384, 459, 640, 781, 883, 886
Bsh1236I	CGCG	2 cut(s)	33, 720
BshFI	GGCC	2 cut(s)	311, 421
BsiSI	CCGG	2 cut(s)	404, 778
BslFI	GGGAC	2 cut(s)	315, 891
BslI	CCNNNNNNNGG	2 cut(s)	318, 687
BsmAI	GTCTC	3 cut(s)	9, 521, 551
BsmFI	GGGAC	2 cut(s)	315, 891
BsmI	GAATGC	1 cut(s)	761
BsnI	GGCC	2 cut(s)	311, 421
Bsp13I	TCCGGA	1 cut(s)	403
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	5 cut(s)	522, 715, 736, 1077, 1111
BspACI	CCGC	1 cut(s)	490
BspANI	GGCC	2 cut(s)	311, 421
BspCNI	CTCAG	4 cut(s)	187, 589, 808, 840
BspEI	TCCGGA	1 cut(s)	403
BspFNI	CGCG	2 cut(s)	33, 720
BspHI	TCATGA	1 cut(s)	835
BspLI	GGNNCC	1 cut(s)	408
BspMAI	CTGCAG	3 cut(s)	374, 477, 799
BspPI	GGATC	2 cut(s)	530, 1072
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	2 cut(s)	120, 156
BssECI	CCNNGG	1 cut(s)	539
BssMI	GATC	5 cut(s)	522, 715, 736, 1077, 1111
BssT1I	CCWWGG	1 cut(s)	539
Bst2UI	CCWGG	1 cut(s)	590
Bst4CI	ACNGT	8 cut(s)	194, 232, 239, 329, 431, 449, 503, 915
Bst6I	CTCTTC	1 cut(s)	71
BstAPI	GCANNNNNTGC	2 cut(s)	265, 378
BstAUI	TGTACA	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	813
BstDEI	CTNAG	6 cut(s)	8, 174, 576, 805, 816, 848
BstF5I	GGATG	3 cut(s)	259, 440, 1022
BstFNI	CGCG	2 cut(s)	33, 720
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	5 cut(s)	525, 718, 739, 1080, 1114
BstMAI	GTCTC	3 cut(s)	9, 521, 551
BstMBI	GATC	5 cut(s)	522, 715, 736, 1077, 1111
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 378
BstNI	CCWGG	1 cut(s)	590
BstNSI	RCATGY	1 cut(s)	906
BstSCI	CCNGG	2 cut(s)	588, 777
BstSFI	CTRYAG	4 cut(s)	20, 370, 473, 795
BstUI	CGCG	2 cut(s)	33, 720
BstV1I	GCAGC	6 cut(s)	384, 459, 640, 781, 883, 886
BstV2I	GAAGAC	2 cut(s)	617, 849
BstX2I	RGATCY	1 cut(s)	1077
BstYI	RGATCY	1 cut(s)	1077
Bsu36I	CCTNAGG	1 cut(s)	174
BsuRI	GGCC	2 cut(s)	311, 421
BtsCI	GGATG	3 cut(s)	259, 440, 1022
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	3 cut(s)	199, 244, 789
Cac8I	GCNNGC	1 cut(s)	813
CaiI	CAGNNNCTG	3 cut(s)	162, 378, 519
CciI	TCATGA	1 cut(s)	835
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	420
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	3 cut(s)	607, 754, 1065
CviAII	CATG	4 cut(s)	700, 713, 836, 903
CviQI	GTAC	3 cut(s)	607, 754, 1065
DdeI	CTNAG	6 cut(s)	8, 174, 576, 805, 816, 848
DpnI	GATC	5 cut(s)	524, 717, 738, 1079, 1113
DpnII	GATC	5 cut(s)	522, 715, 736, 1077, 1111
DraI	TTTAAA	1 cut(s)	726
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	363
Eco81I	CCTNAGG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	588
EcoT14I	CCWWGG	1 cut(s)	539
EcoT22I	ATGCAT	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	539
FaeI	CATG	4 cut(s)	703, 716, 839, 906
FaiI	YATR	9 cut(s)	104, 225, 353, 650, 701, 714, 822, 837, 904
FalI	AAGNNNNNCTT	4 cut(s)	407, 439, 1067, 1099
FaqI	GGGAC	2 cut(s)	315, 891
FatI	CATG	4 cut(s)	699, 712, 835, 902
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	6 cut(s)	373, 473, 654, 795, 872, 900
FokI	GGATG	3 cut(s)	246, 427, 1029
Fsp4HI	GCNGC	6 cut(s)	373, 473, 654, 795, 872, 900
FspBI	CTAG	3 cut(s)	497, 668, 1146
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	6 cut(s)	373, 473, 654, 795, 872, 900
GsuI	CTGGAG	1 cut(s)	1155
HaeIII	GGCC	2 cut(s)	311, 421
HapII	CCGG	2 cut(s)	404, 778
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	703, 716, 839, 906
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	1043
HinfI	GANTC	6 cut(s)	126, 151, 179, 569, 857, 1157
HpaII	CCGG	2 cut(s)	404, 778
HphI	GGTGA	3 cut(s)	70, 103, 419
Hpy166II	GTNNAC	4 cut(s)	125, 235, 487, 950
Hpy188I	TCNGA	5 cut(s)	445, 515, 747, 945, 986
Hpy8I	GTNNAC	4 cut(s)	125, 235, 487, 950
HpyAV	CCTTC	4 cut(s)	24, 55, 343, 446
HpyCH4III	ACNGT	8 cut(s)	194, 232, 239, 329, 431, 449, 503, 915
HpyCH4V	TGCA	9 cut(s)	248, 259, 372, 475, 712, 797, 902, 998, 1070
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 378
HpyF3I	CTNAG	6 cut(s)	8, 174, 576, 805, 816, 848
Hsp92II	CATG	4 cut(s)	703, 716, 839, 906
HspAI	GCGC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	403
Kzo9I	GATC	5 cut(s)	522, 715, 736, 1077, 1111
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	6 cut(s)	384, 459, 640, 781, 883, 886
LweI	GCATC	2 cut(s)	268, 699
MaeI	CTAG	3 cut(s)	497, 668, 1146
MaeIII	GTNAC	4 cut(s)	323, 365, 431, 784
MalI	GATC	5 cut(s)	524, 717, 738, 1079, 1113
MboI	GATC	5 cut(s)	522, 715, 736, 1077, 1111
MboII	GAAGA	8 cut(s)	47, 79, 88, 356, 617, 656, 854, 1087
MfeI	CAATTG	1 cut(s)	956
MflI	RGATCY	1 cut(s)	1077
MluCI	AATT	9 cut(s)	47, 398, 611, 636, 704, 748, 956, 969, 980
MlyI	GAGTC	2 cut(s)	120, 866
MmeI	TCCRAC	1 cut(s)	468
Mph1103I	ATGCAT	1 cut(s)	714
MroI	TCCGGA	1 cut(s)	403
MseI	TTAA	7 cut(s)	95, 243, 282, 306, 614, 725, 1001
MspI	CCGG	2 cut(s)	404, 778
MspR9I	CCNGG	2 cut(s)	590, 779
MunI	CAATTG	1 cut(s)	956
Mva1269I	GAATGC	1 cut(s)	761
MvaI	CCWGG	1 cut(s)	590
MvnI	CGCG	2 cut(s)	33, 720
MwoI	GCNNNNNNNGC	2 cut(s)	265, 378
NciI	CCSGG	1 cut(s)	779
NdeII	GATC	5 cut(s)	522, 715, 736, 1077, 1111
NlaIII	CATG	4 cut(s)	703, 716, 839, 906
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	4 cut(s)	323, 365, 431, 784
NsiI	ATGCAT	1 cut(s)	714
NspI	RCATGY	1 cut(s)	906
PagI	TCATGA	1 cut(s)	835
PctI	GAATGC	1 cut(s)	761
PfeI	GAWTC	4 cut(s)	151, 179, 569, 1157
PflMI	CCANNNNNTGG	2 cut(s)	318, 687
PkrI	GCNGC	6 cut(s)	374, 474, 655, 796, 873, 901
PleI	GAGTC	2 cut(s)	120, 865
PpsI	GAGTC	2 cut(s)	120, 865
PshBI	ATTAAT	2 cut(s)	614, 1001
Psp6I	CCWGG	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	588
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	420
PstI	CTGCAG	3 cut(s)	374, 477, 799
PstNI	CAGNNNCTG	3 cut(s)	162, 378, 519
PsuI	RGATCY	1 cut(s)	1077
RsaI	GTAC	3 cut(s)	608, 755, 1066
RsaNI	GTAC	3 cut(s)	607, 754, 1065
SaqAI	TTAA	7 cut(s)	95, 243, 282, 306, 614, 725, 1001
SatI	GCNGC	6 cut(s)	373, 473, 654, 795, 872, 900
Sau3AI	GATC	5 cut(s)	522, 715, 736, 1077, 1111
Sau96I	GGNCC	1 cut(s)	420
SchI	GAGTC	2 cut(s)	120, 866
ScrFI	CCNGG	2 cut(s)	590, 779
SfaNI	GCATC	2 cut(s)	268, 699
SfcI	CTRYAG	4 cut(s)	20, 370, 473, 795
Sse9I	AATT	9 cut(s)	47, 398, 611, 636, 704, 748, 956, 969, 980
SsiI	CCGC	1 cut(s)	490
SspMI	CTAG	3 cut(s)	497, 668, 1146
StyD4I	CCNGG	2 cut(s)	588, 777
StyI	CCWWGG	1 cut(s)	539
TaaI	ACNGT	8 cut(s)	194, 232, 239, 329, 431, 449, 503, 915
TaqI	TCGA	2 cut(s)	298, 525
TasI	AATT	9 cut(s)	47, 398, 611, 636, 704, 748, 956, 969, 980
TatI	WGTACW	2 cut(s)	606, 753
TfiI	GAWTC	4 cut(s)	151, 179, 569, 1157
Tru1I	TTAA	7 cut(s)	95, 243, 282, 306, 614, 725, 1001
Tru9I	TTAA	7 cut(s)	95, 243, 282, 306, 614, 725, 1001
TscAI	CASTG	3 cut(s)	199, 244, 789
TseFI	GTSAC	4 cut(s)	323, 365, 431, 784
TseI	GCWGC	6 cut(s)	372, 472, 653, 794, 871, 899
Tsp45I	GTSAC	4 cut(s)	323, 365, 431, 784
TspDTI	ATGAA	4 cut(s)	240, 411, 561, 936
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	3 cut(s)	199, 244, 789
Van91I	CCANNNNNTGG	2 cut(s)	318, 687
VspI	ATTAAT	2 cut(s)	614, 1001
XapI	RAATTY	4 cut(s)	398, 748, 969, 980
XbaI	TCTAGA	2 cut(s)	496, 667
XceI	RCATGY	1 cut(s)	906
XmiI	GTMKAC	1 cut(s)	124
XspI	CTAG	3 cut(s)	497, 668, 1146
Zsp2I	ATGCAT	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.