Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009858

Physical Location & Seq

Genomic Coordinates Reverse (-)

21263874 .. 21267078

Gene Structure 3205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30680

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAATACAGTGGCATTGTTGAGGACTGCTGTTGTGATTATGAAACGGTGGACAGTGTTAATGCAGAGGTGTTGCATCCTCTGCTACAAGAGATTGTTAAAACTCCGTTTTTTCGATATTTTAAGGCCAAGCTGTGGTGTGACTGTCCCTTCTGGACTGAAGATGGTATGTGCCTCCTGCGTGACTGCAGCGTCTGCGATTGCCCAGAAAATGAATTTCCGGAACCTTTCAAGAGGCCCTTTCACCGTGACCTTCCATCCGACAGTTTGGTTTGTCAAAATGATAAGCTGCAGGGGTCTGTTGACCGCACTCTAGACAGTAGAGCTTTCAGAGGCTGGATCGAGACAGATAACCCTTGGACAAATGATGATGAGACTGATAATGATGAGATGACATATGTGAACCTTCTGCTGAACCCTGAACGTTACACTGGCTATACTGGTCTATCAGCAAGAAGGATATGGGATGCTGTTTATTCTGAAAATTGCCCAAAATATTCATCTCAGGACATTTGCCAGGAGCAAAGAGTATTGTACAAATTAATATCGGGTCTTCACTCATCAATTTCAATACACATAGCTGCTGATTATCTTCTAGACAAGATTACCAATCTGTGGGGTCAAAACATGGAATTGATGCATGATCGCGTTTTAAAATATCCAGATCGTGTTCAGAATTTGTACTTCGCATTCCTCTTTGTTCTCCGGGCAGTGACAAAAGCTGCAGATTACTTAGAGCAGGCTGAGTATGATACAGGTAATCATGAGGAAGACCTGAGAACAGAGTCTTTGATGAGGCAGCTACTTTACAATCCTAAACTCCAAGCTGCATGTCCCCTACCGTTTGATGAAGCAAAGCTCTGGAAAGGTCAGAGTGGACAACAATTGAAGCAACAAATTCAAAAGAAATTCAGAAACATTAGTGCATTAATGGATTGTGTGGGATGTGAGAAATGTCGGCTCTGGGGAAAGCTTCAAGTTCTTGGTCTTGGTACTGCATTGAAGATCCTCTTTTCTGTTGATGGTAAAAATCATCAAGATCAACCTCTGCAGCTGCAACGAAATGAAGTGATAGCTCTCGTAAATCTGCTAAATCGACTCTCTGAATCTGTCAAGCGGACATTCAATCAAGAAAGTAGCGGAAGGAGGACGAGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

386

Amino Acids

44.71

Weight (kDa)

5.34

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERO1	PF04137	25 - 372	3.3e-122	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0009858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72280
prunus_persica	Prupe.4G145500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027131 RchiOBHm_Chr5g0027151 RchiOBHm_Chr5g0027161 RchiOBHm_Chr5g0027251
rosa_laevigata	RLG00000032999 RLG00000033001
rosa_multiflora	Rmu_sc0000882.1_g000035 Rmu_sc0006065.1_g000015
rosa_rugosa	Rorug05G0097800 Rorug05G0124600
rosa_samantha	Rh5AG191300 Rh5AG191800 Rh5BG189000 Rh5BG189500 Rh5CG210100 Rh5DG190800 Rh5DG191600
rosa_wichuraiana	Rw5G017440 Rw5G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AccB7I	CCANNNNNTGG	2 cut(s)	135, 615
AccII	CGCG	1 cut(s)	648
AccIII	TCCGGA	1 cut(s)	220
AciI	CCGC	3 cut(s)	307, 1117, 1140
AclI	AACGTT	1 cut(s)	424
AclWI	GGATC	2 cut(s)	347, 1000
AcsI	RAATTY	4 cut(s)	215, 676, 897, 908
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	3 cut(s)	536, 683, 994
AfiI	CCNNNNNNNGG	2 cut(s)	135, 615
AgsI	TTSAA	7 cut(s)	232, 570, 889, 902, 977, 1003, 1126
AjnI	CCWGG	1 cut(s)	516
Alw26I	GTCTC	2 cut(s)	338, 368
AlwI	GGATC	2 cut(s)	347, 1000
AlwNI	CAGNNNCTG	2 cut(s)	195, 336
Aor13HI	TCCGGA	1 cut(s)	220
AoxI	GGCC	2 cut(s)	126, 236
ApeKI	GCWGC	8 cut(s)	189, 289, 581, 722, 799, 827, 1051, 1054
ApoI	RAATTY	4 cut(s)	215, 676, 897, 908
AseI	ATTAAT	2 cut(s)	542, 929
AspS9I	GGNCC	1 cut(s)	237
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	1 cut(s)	236
BbsI	GAAGAC	2 cut(s)	545, 777
BbvI	GCAGC	8 cut(s)	201, 276, 568, 709, 811, 814, 1041, 1063
BccI	CCATC	3 cut(s)	158, 265, 1016
BciT130I	CCWGG	1 cut(s)	518
BcnI	CCSGG	1 cut(s)	707
BcoDI	GTCTC	2 cut(s)	338, 368
BfaI	CTAG	2 cut(s)	314, 596
BfmI	CTRYAG	4 cut(s)	187, 290, 723, 1049
BisI	GCNGC	8 cut(s)	190, 290, 582, 723, 800, 828, 1052, 1055
BlsI	GCNGC	8 cut(s)	191, 291, 583, 724, 801, 829, 1053, 1056
Bme1390I	CCNGG	2 cut(s)	518, 707
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	2 cut(s)	518, 707
BmsI	GCATC	3 cut(s)	85, 457, 627
BpiI	GAAGAC	2 cut(s)	545, 777
BpuMI	CCSGG	1 cut(s)	707
BsaJI	CCNNGG	1 cut(s)	356
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	1 cut(s)	1138
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 615
Bse1I	ACTGG	2 cut(s)	436, 445
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	518
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	4 cut(s)	76, 257, 472, 950
BseLI	CCNNNNNNNGG	2 cut(s)	135, 615
BseMII	CTCAG	3 cut(s)	518, 735, 767
BseNI	ACTGG	2 cut(s)	436, 445
BseXI	GCAGC	8 cut(s)	201, 276, 568, 709, 811, 814, 1041, 1063
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	2 cut(s)	128, 238
BsiSI	CCGG	2 cut(s)	221, 706
BslFI	GGGAC	2 cut(s)	132, 819
BslI	CCNNNNNNNGG	2 cut(s)	135, 615
BsmAI	GTCTC	2 cut(s)	338, 368
BsmFI	GGGAC	2 cut(s)	132, 819
BsmI	GAATGC	1 cut(s)	689
BsnI	GGCC	2 cut(s)	128, 238
Bsp13I	TCCGGA	1 cut(s)	220
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	5 cut(s)	339, 643, 664, 1005, 1039
BspACI	CCGC	3 cut(s)	307, 1117, 1140
BspANI	GGCC	2 cut(s)	128, 238
BspCNI	CTCAG	3 cut(s)	517, 736, 768
BspEI	TCCGGA	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	648
BspHI	TCATGA	1 cut(s)	763
BspLI	GGNNCC	1 cut(s)	225
BspMAI	CTGCAG	4 cut(s)	191, 294, 727, 1053
BspPI	GGATC	2 cut(s)	347, 1000
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	436, 445
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	5 cut(s)	339, 643, 664, 1005, 1039
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	518
Bst4CI	ACNGT	8 cut(s)	11, 49, 56, 146, 248, 266, 320, 843
BstAPI	GCANNNNNTGC	2 cut(s)	82, 195
BstAUI	TGTACA	1 cut(s)	534
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	4 cut(s)	504, 733, 744, 776
BstF5I	GGATG	4 cut(s)	76, 257, 472, 950
BstFNI	CGCG	1 cut(s)	648
BstKTI	GATC	5 cut(s)	342, 646, 667, 1008, 1042
BstMAI	GTCTC	2 cut(s)	338, 368
BstMBI	GATC	5 cut(s)	339, 643, 664, 1005, 1039
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 195
BstNI	CCWGG	1 cut(s)	518
BstNSI	RCATGY	1 cut(s)	834
BstSCI	CCNGG	2 cut(s)	516, 705
BstSFI	CTRYAG	4 cut(s)	187, 290, 723, 1049
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	8 cut(s)	201, 276, 568, 709, 811, 814, 1041, 1063
BstV2I	GAAGAC	2 cut(s)	545, 777
BstX2I	RGATCY	1 cut(s)	1005
BstYI	RGATCY	1 cut(s)	1005
BsuRI	GGCC	2 cut(s)	128, 238
BtsCI	GGATG	4 cut(s)	76, 257, 472, 950
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	4 cut(s)	16, 61, 429, 717
Cac8I	GCNNGC	1 cut(s)	741
CaiI	CAGNNNCTG	2 cut(s)	195, 336
CciI	TCATGA	1 cut(s)	763
Cfr13I	GGNCC	1 cut(s)	237
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	3 cut(s)	535, 682, 993
CviAII	CATG	4 cut(s)	628, 641, 764, 831
CviQI	GTAC	3 cut(s)	535, 682, 993
DdeI	CTNAG	4 cut(s)	504, 733, 744, 776
DpnI	GATC	5 cut(s)	341, 645, 666, 1007, 1041
DpnII	GATC	5 cut(s)	339, 643, 664, 1005, 1039
DraI	TTTAAA	1 cut(s)	654
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	356
EcoT22I	ATGCAT	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	4 cut(s)	631, 644, 767, 834
FalI	AAGNNNNNCTT	4 cut(s)	224, 256, 995, 1027
FaqI	GGGAC	2 cut(s)	132, 819
FatI	CATG	4 cut(s)	627, 640, 763, 830
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	8 cut(s)	190, 290, 582, 723, 800, 828, 1052, 1055
FokI	GGATG	4 cut(s)	63, 244, 479, 957
Fsp4HI	GCNGC	8 cut(s)	190, 290, 582, 723, 800, 828, 1052, 1055
FspBI	CTAG	2 cut(s)	314, 596
GluI	GCNGC	8 cut(s)	190, 290, 582, 723, 800, 828, 1052, 1055
HaeIII	GGCC	2 cut(s)	128, 238
HapII	CCGG	2 cut(s)	221, 706
HgaI	GACGC	1 cut(s)	181
Hin1II	CATG	4 cut(s)	631, 644, 767, 834
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	971
HinfI	GANTC	3 cut(s)	785, 1098, 1106
HpaII	CCGG	2 cut(s)	221, 706
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	4 cut(s)	52, 304, 403, 878
Hpy188I	TCNGA	7 cut(s)	262, 332, 481, 675, 873, 914, 1105
Hpy8I	GTNNAC	4 cut(s)	52, 304, 403, 878
HpyAV	CCTTC	5 cut(s)	160, 263, 416, 450, 1137
HpyCH4III	ACNGT	8 cut(s)	11, 49, 56, 146, 248, 266, 320, 843
HpyCH4IV	ACGT	1 cut(s)	424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 195
HpyF3I	CTNAG	4 cut(s)	504, 733, 744, 776
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	4 cut(s)	631, 644, 767, 834
Kpn2I	TCCGGA	1 cut(s)	220
Kzo9I	GATC	5 cut(s)	339, 643, 664, 1005, 1039
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	8 cut(s)	201, 276, 568, 709, 811, 814, 1041, 1063
LweI	GCATC	3 cut(s)	85, 457, 627
MaeI	CTAG	2 cut(s)	314, 596
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	5 cut(s)	140, 182, 248, 425, 712
MalI	GATC	5 cut(s)	341, 645, 666, 1007, 1041
MboI	GATC	5 cut(s)	339, 643, 664, 1005, 1039
MboII	GAAGA	5 cut(s)	173, 545, 584, 782, 1015
MfeI	CAATTG	1 cut(s)	884
MflI	RGATCY	1 cut(s)	1005
MluCI	AATT	9 cut(s)	215, 484, 539, 564, 632, 676, 884, 897, 908
MlyI	GAGTC	2 cut(s)	794, 1092
MmeI	TCCRAC	1 cut(s)	285
Mph1103I	ATGCAT	1 cut(s)	642
MroI	TCCGGA	1 cut(s)	220
MseI	TTAA	6 cut(s)	60, 99, 123, 542, 653, 929
MspA1I	CMGCKG	1 cut(s)	1054
MspI	CCGG	2 cut(s)	221, 706
MspR9I	CCNGG	2 cut(s)	518, 707
MunI	CAATTG	1 cut(s)	884
Mva1269I	GAATGC	1 cut(s)	689
MvaI	CCWGG	1 cut(s)	518
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	2 cut(s)	82, 195
NciI	CCSGG	1 cut(s)	707
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	5 cut(s)	339, 643, 664, 1005, 1039
NlaIII	CATG	4 cut(s)	631, 644, 767, 834
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	4 cut(s)	140, 182, 248, 712
NsiI	ATGCAT	1 cut(s)	642
NspI	RCATGY	1 cut(s)	834
PagI	TCATGA	1 cut(s)	763
PctI	GAATGC	1 cut(s)	689
PfeI	GAWTC	1 cut(s)	1106
PflMI	CCANNNNNTGG	2 cut(s)	135, 615
PkrI	GCNGC	8 cut(s)	191, 291, 583, 724, 801, 829, 1053, 1056
PleI	GAGTC	2 cut(s)	793, 1092
PpsI	GAGTC	2 cut(s)	793, 1092
PshBI	ATTAAT	2 cut(s)	542, 929
Psp1406I	AACGTT	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	516
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	237
PstI	CTGCAG	4 cut(s)	191, 294, 727, 1053
PstNI	CAGNNNCTG	2 cut(s)	195, 336
PsuI	RGATCY	1 cut(s)	1005
PvuII	CAGCTG	1 cut(s)	1054
RsaI	GTAC	3 cut(s)	536, 683, 994
RsaNI	GTAC	3 cut(s)	535, 682, 993
SaqAI	TTAA	6 cut(s)	60, 99, 123, 542, 653, 929
SatI	GCNGC	8 cut(s)	190, 290, 582, 723, 800, 828, 1052, 1055
Sau3AI	GATC	5 cut(s)	339, 643, 664, 1005, 1039
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	2 cut(s)	794, 1092
ScrFI	CCNGG	2 cut(s)	518, 707
SfaNI	GCATC	3 cut(s)	85, 457, 627
SfcI	CTRYAG	4 cut(s)	187, 290, 723, 1049
Sse9I	AATT	9 cut(s)	215, 484, 539, 564, 632, 676, 884, 897, 908
SsiI	CCGC	3 cut(s)	307, 1117, 1140
SspI	AATATT	1 cut(s)	497
SspMI	CTAG	2 cut(s)	314, 596
StyD4I	CCNGG	2 cut(s)	516, 705
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	8 cut(s)	11, 49, 56, 146, 248, 266, 320, 843
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	3 cut(s)	115, 342, 1096
TasI	AATT	9 cut(s)	215, 484, 539, 564, 632, 676, 884, 897, 908
TatI	WGTACW	2 cut(s)	534, 681
TfiI	GAWTC	1 cut(s)	1106
Tru1I	TTAA	6 cut(s)	60, 99, 123, 542, 653, 929
Tru9I	TTAA	6 cut(s)	60, 99, 123, 542, 653, 929
TscAI	CASTG	4 cut(s)	16, 61, 436, 717
TseFI	GTSAC	4 cut(s)	140, 182, 248, 712
TseI	GCWGC	8 cut(s)	189, 289, 581, 722, 799, 827, 1051, 1054
Tsp45I	GTSAC	4 cut(s)	140, 182, 248, 712
TspDTI	ATGAA	6 cut(s)	17, 57, 228, 489, 864, 1080
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	4 cut(s)	16, 61, 436, 717
Van91I	CCANNNNNTGG	2 cut(s)	135, 615
VspI	ATTAAT	2 cut(s)	542, 929
XapI	RAATTY	4 cut(s)	215, 676, 897, 908
XbaI	TCTAGA	2 cut(s)	313, 595
XceI	RCATGY	1 cut(s)	834
XspI	CTAG	2 cut(s)	314, 596
Zsp2I	ATGCAT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.