Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000882.1

Orthogroup ID

OG0009858

Physical Location & Seq

Genomic Coordinates Reverse (-)

178263 .. 181858

Gene Structure 3596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000882.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atggtaaaggagaagaatgtgaagagatgggttttagtgggtgctgtggttgtggtgttattagccatagctctcacctctaccagagattttaattctaaactcaacttctctgtttttcaagaatcccagttcctgccaatgtcctcagaagtgttgcatcctctgctacaagagattgttaaaactccgttttttcggtattttaaggccaagctgtggtgtgactgtgccttctggactgaagatggtatgtgcctcctgcgtgactgcagcatctgcgaatgtccagaaaatgaatttccggaacctttcaagaggccctttcaccgtggccttccatctgatagtttggtttgtcaagatgataagctgcaggggtctgttgaccgcactctagacagtagagctttcagaggctggattgagacagataacccttgtacaaatgatgacgagactgataatgatgagatgacctacgtgaaccttctactgaaccctgaacgttacactggctacactggtccatcagcaagaaggatatgggatgctgtttattctgaaaattgcccaaaatatcgtgttcagaatttgtacttcgcattcctctttgttctccaggcagtgacaaaagctgcagattacttagagcagactgagtatgatacaggtaatcatgaggaagacctaagaacagagtctttgatgaggcagctactttacaatcctaaactccaagctgcatgtcccctaccgtttgatgaagcaaagctctggaaaggtcagagtggaccacaattgaagcaacaaattcaaaagaaattcagaaacattagtgcattaatggattgtgtgggatgtgagaaatgtcggctctggggaaagcttcaagttcttggtcttggtactgcattgaagatcctcttttctgttgatggtaaaaatcatcaagatcaacctctgcagctgcaacgaaatgaagtgatagctctcataaatctgctaaatcgactctctgaatctgtcaaatatgcttgtcaaagcggacattcaatcaagaaagtagcggaaggaggacgagttgttgaaccttattctatacaaacaatcagtacattgcaaagaatatgggaggcagtgatcccgatcaggcttaggttagggatgttagcactgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

393

Amino Acids

45.07

Weight (kDa)

6.55

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72280
prunus_persica	Prupe.4G145500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027131 RchiOBHm_Chr5g0027151 RchiOBHm_Chr5g0027161 RchiOBHm_Chr5g0027251
rosa_laevigata	RLG00000032999 RLG00000033001
rosa_multiflora	Rmu_sc0000882.1_g000035 Rmu_sc0006065.1_g000015
rosa_rugosa	Rorug05G0097800 Rorug05G0124600
rosa_samantha	Rh5AG191300 Rh5AG191800 Rh5BG189000 Rh5BG189500 Rh5CG210100 Rh5DG190800 Rh5DG191600
rosa_wichuraiana	Rw5G017440 Rw5G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	219
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	3 cut(s)	391, 1047, 1070
AclI	AACGTT	1 cut(s)	508
AclWI	GGATC	2 cut(s)	916, 1138
AcsI	RAATTY	4 cut(s)	299, 592, 813, 824
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	4 cut(s)	445, 599, 910, 1117
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	8 cut(s)	122, 316, 805, 818, 893, 919, 1056, 1091
AjnI	CCWGG	1 cut(s)	621
Alw26I	GTCTC	2 cut(s)	422, 452
AlwI	GGATC	2 cut(s)	916, 1138
AlwNI	CAGNNNCTG	3 cut(s)	136, 279, 420
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	3 cut(s)	210, 320, 334
ApeKI	GCWGC	7 cut(s)	273, 373, 638, 715, 743, 967, 970
ApoI	RAATTY	4 cut(s)	299, 592, 813, 824
AseI	ATTAAT	1 cut(s)	845
AspS9I	GGNCC	3 cut(s)	321, 527, 794
AsuHPI	GGTGA	2 cut(s)	67, 320
AvaII	GGWCC	2 cut(s)	527, 794
BbsI	GAAGAC	1 cut(s)	693
BbvI	GCAGC	7 cut(s)	285, 360, 625, 727, 730, 957, 979
BccI	CCATC	5 cut(s)	21, 242, 349, 538, 932
BciT130I	CCWGG	1 cut(s)	623
BcoDI	GTCTC	2 cut(s)	422, 452
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	4 cut(s)	271, 374, 639, 965
BisI	GCNGC	7 cut(s)	274, 374, 639, 716, 744, 968, 971
BlsI	GCNGC	7 cut(s)	275, 375, 640, 717, 745, 969, 972
Bme1390I	CCNGG	1 cut(s)	623
Bme18I	GGWCC	2 cut(s)	527, 794
BmgT120I	GGNCC	3 cut(s)	321, 527, 794
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	623
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	3 cut(s)	169, 285, 541
BmuI	ACTGGG	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	693
BpmI	CTGGAG	1 cut(s)	605
Bpu10I	CCTNAGC	1 cut(s)	1157
BsaAI	YACGTR	1 cut(s)	484
BsaBI	GATNNNNATC	1 cut(s)	1148
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	304
BsaXI	ACNNNNNCTCC	2 cut(s)	1068, 1098
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	3 cut(s)	130, 520, 529
Bse3DI	GCAATG	1 cut(s)	1118
Bse8I	GATNNNNATC	1 cut(s)	1148
BseAI	TCCGGA	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	623
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	4 cut(s)	160, 556, 866, 1173
BseJI	GATNNNNATC	1 cut(s)	1148
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	1118
BseMII	CTCAG	2 cut(s)	162, 651
BseNI	ACTGG	3 cut(s)	130, 520, 529
BseXI	GCAGC	7 cut(s)	285, 360, 625, 727, 730, 957, 979
BshFI	GGCC	3 cut(s)	212, 322, 336
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	422, 452
BsmFI	GGGAC	1 cut(s)	735
BsmI	GAATGC	1 cut(s)	605
BsnI	GGCC	3 cut(s)	212, 322, 336
Bsp13I	TCCGGA	1 cut(s)	304
Bsp1407I	TGTACA	1 cut(s)	443
Bsp143I	GATC	4 cut(s)	921, 955, 1143, 1149
BspACI	CCGC	3 cut(s)	391, 1047, 1070
BspANI	GGCC	3 cut(s)	212, 322, 336
BspCNI	CTCAG	2 cut(s)	161, 652
BspEI	TCCGGA	1 cut(s)	304
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	4 cut(s)	275, 378, 643, 969
BspPI	GGATC	2 cut(s)	916, 1138
BsrDI	GCAATG	1 cut(s)	1118
BsrGI	TGTACA	1 cut(s)	443
BsrI	ACTGG	3 cut(s)	130, 520, 529
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	4 cut(s)	921, 955, 1143, 1149
Bst2UI	CCWGG	1 cut(s)	623
Bst4CI	ACNGT	5 cut(s)	230, 332, 404, 759, 1179
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	2 cut(s)	166, 279
BstAUI	TGTACA	1 cut(s)	443
BstBAI	YACGTR	1 cut(s)	484
BstDEI	CTNAG	5 cut(s)	148, 649, 660, 692, 1157
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	4 cut(s)	160, 556, 866, 1173
BstKTI	GATC	4 cut(s)	924, 958, 1146, 1152
BstMAI	GTCTC	2 cut(s)	422, 452
BstMBI	GATC	4 cut(s)	921, 955, 1143, 1149
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 279
BstNI	CCWGG	1 cut(s)	623
BstNSI	RCATGY	1 cut(s)	750
BstSCI	CCNGG	1 cut(s)	621
BstSFI	CTRYAG	4 cut(s)	271, 374, 639, 965
BstV1I	GCAGC	7 cut(s)	285, 360, 625, 727, 730, 957, 979
BstV2I	GAAGAC	1 cut(s)	693
BstX2I	RGATCY	1 cut(s)	921
BstYI	RGATCY	1 cut(s)	921
BsuRI	GGCC	3 cut(s)	212, 322, 336
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	4 cut(s)	160, 556, 866, 1173
BtsI	GCAGTG	2 cut(s)	633, 1146
BtsIMutI	CAGTG	5 cut(s)	513, 522, 633, 1146, 1175
CaiI	CAGNNNCTG	3 cut(s)	136, 279, 420
CciI	TCATGA	1 cut(s)	679
Cfr13I	GGNCC	3 cut(s)	321, 527, 794
Csp6I	GTAC	4 cut(s)	444, 598, 909, 1116
CviAII	CATG	2 cut(s)	680, 747
CviQI	GTAC	4 cut(s)	444, 598, 909, 1116
DdeI	CTNAG	5 cut(s)	148, 649, 660, 692, 1157
DpnI	GATC	4 cut(s)	923, 957, 1145, 1151
DpnII	GATC	4 cut(s)	921, 955, 1143, 1149
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco47I	GGWCC	2 cut(s)	527, 794
Eco57I	CTGAAG	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	621
FaeI	CATG	2 cut(s)	683, 750
FalI	AAGNNNNNCTT	4 cut(s)	308, 340, 911, 943
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	2 cut(s)	679, 746
Fnu4HI	GCNGC	7 cut(s)	274, 374, 639, 716, 744, 968, 971
FokI	GGATG	3 cut(s)	147, 563, 873
Fsp4HI	GCNGC	7 cut(s)	274, 374, 639, 716, 744, 968, 971
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	7 cut(s)	274, 374, 639, 716, 744, 968, 971
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	3 cut(s)	212, 322, 336
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	2 cut(s)	683, 750
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	4 cut(s)	125, 701, 1014, 1022
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	2 cut(s)	67, 320
Hpy166II	GTNNAC	3 cut(s)	388, 487, 794
Hpy188I	TCNGA	8 cut(s)	151, 346, 416, 565, 591, 789, 830, 1021
Hpy8I	GTNNAC	3 cut(s)	388, 487, 794
HpyAV	CCTTC	5 cut(s)	244, 347, 500, 534, 1067
HpyCH4III	ACNGT	5 cut(s)	230, 332, 404, 759, 1179
HpyCH4IV	ACGT	2 cut(s)	483, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 279
HpyF3I	CTNAG	5 cut(s)	148, 649, 660, 692, 1157
HpySE526I	ACGT	2 cut(s)	483, 508
Hsp92II	CATG	2 cut(s)	683, 750
Kpn2I	TCCGGA	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	921, 955, 1143, 1149
Lsp1109I	GCAGC	7 cut(s)	285, 360, 625, 727, 730, 957, 979
LweI	GCATC	3 cut(s)	169, 285, 541
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	2 cut(s)	483, 508
MaeIII	GTNAC	4 cut(s)	224, 266, 509, 628
MalI	GATC	4 cut(s)	923, 957, 1145, 1151
MboI	GATC	4 cut(s)	921, 955, 1143, 1149
MboII	GAAGA	5 cut(s)	25, 34, 257, 698, 931
MfeI	CAATTG	1 cut(s)	800
MflI	RGATCY	1 cut(s)	921
MluCI	AATT	7 cut(s)	94, 299, 568, 592, 800, 813, 824
MlyI	GAGTC	2 cut(s)	710, 1008
MroI	TCCGGA	1 cut(s)	304
MseI	TTAA	4 cut(s)	93, 183, 207, 845
MspA1I	CMGCKG	1 cut(s)	970
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	623
MunI	CAATTG	1 cut(s)	800
Mva1269I	GAATGC	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	623
MwoI	GCNNNNNNNGC	2 cut(s)	166, 279
NdeII	GATC	4 cut(s)	921, 955, 1143, 1149
NlaIII	CATG	2 cut(s)	683, 750
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	3 cut(s)	224, 266, 628
NspI	RCATGY	1 cut(s)	750
PagI	TCATGA	1 cut(s)	679
PctI	GAATGC	1 cut(s)	605
PfeI	GAWTC	2 cut(s)	125, 1022
PflMI	CCANNNNNTGG	1 cut(s)	219
PkrI	GCNGC	7 cut(s)	275, 375, 640, 717, 745, 969, 972
PleI	GAGTC	2 cut(s)	709, 1008
PpsI	GAGTC	2 cut(s)	709, 1008
Ppu21I	YACGTR	1 cut(s)	484
PshBI	ATTAAT	1 cut(s)	845
Psp1406I	AACGTT	1 cut(s)	508
Psp6I	CCWGG	1 cut(s)	621
PspGI	CCWGG	1 cut(s)	621
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	3 cut(s)	321, 527, 794
PstI	CTGCAG	4 cut(s)	275, 378, 643, 969
PstNI	CAGNNNCTG	3 cut(s)	136, 279, 420
PsuI	RGATCY	1 cut(s)	921
PvuII	CAGCTG	1 cut(s)	970
RsaI	GTAC	4 cut(s)	445, 599, 910, 1117
RsaNI	GTAC	4 cut(s)	444, 598, 909, 1116
SaqAI	TTAA	4 cut(s)	93, 183, 207, 845
SatI	GCNGC	7 cut(s)	274, 374, 639, 716, 744, 968, 971
Sau3AI	GATC	4 cut(s)	921, 955, 1143, 1149
Sau96I	GGNCC	3 cut(s)	321, 527, 794
SchI	GAGTC	2 cut(s)	710, 1008
ScrFI	CCNGG	1 cut(s)	623
SfaNI	GCATC	3 cut(s)	169, 285, 541
SfcI	CTRYAG	4 cut(s)	271, 374, 639, 965
SinI	GGWCC	2 cut(s)	527, 794
Sse9I	AATT	7 cut(s)	94, 299, 568, 592, 800, 813, 824
SsiI	CCGC	3 cut(s)	391, 1047, 1070
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	621
TaaI	ACNGT	5 cut(s)	230, 332, 404, 759, 1179
TaiI	ACGT	2 cut(s)	486, 511
TaqI	TCGA	1 cut(s)	1012
TasI	AATT	7 cut(s)	94, 299, 568, 592, 800, 813, 824
TatI	WGTACW	3 cut(s)	443, 597, 1115
TfiI	GAWTC	2 cut(s)	125, 1022
Tru1I	TTAA	4 cut(s)	93, 183, 207, 845
Tru9I	TTAA	4 cut(s)	93, 183, 207, 845
TscAI	CASTG	5 cut(s)	520, 529, 633, 1146, 1182
TseFI	GTSAC	3 cut(s)	224, 266, 628
TseI	GCWGC	7 cut(s)	273, 373, 638, 715, 743, 967, 970
Tsp45I	GTSAC	3 cut(s)	224, 266, 628
TspDTI	ATGAA	3 cut(s)	312, 780, 996
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	5 cut(s)	520, 529, 633, 1146, 1182
Van91I	CCANNNNNTGG	1 cut(s)	219
VpaK11BI	GGWCC	2 cut(s)	527, 794
VspI	ATTAAT	1 cut(s)	845
XapI	RAATTY	4 cut(s)	299, 592, 813, 824
XbaI	TCTAGA	1 cut(s)	397
XceI	RCATGY	1 cut(s)	750
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.