Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009858

Physical Location & Seq

Genomic Coordinates Reverse (-)

11000958 .. 11003116

Gene Structure 2159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0124600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATTAAACTCGATTGTTCCCAGTTTCCTTTCTTTGAAATCAACCGATTCTGCAAAGCATTTCAGACGACTCTATTTTCAAGGATTAGGGAGAATGACACCTTTGATTGCCAGCATGGTCCATCTGAATGCTTATTGAACACGGTGGAAGCCTGTGCAATTGAGACCTGGCCTGCACTGGTGCCTTTTCCCACATTTTTCTTTCATTTAGATCAAGTGAAGGCAAATTCAGCATTAAAGGAAGGGTCTAAGGGTAGCGACTCTGATCACATTGCAGCACATACATTTACATTTCGCGAATTGGCAGCTGCAACAAAGAATTTTAGAGGGCAGCTGGAGAGTTCTGTGGGTGAAGGAGGTTTTGGTCAAGTGTATAGAGGGCAGCTGGAGAGTTCTAATCAGAAATTAGATGCGGTTAAAGCTTTCAATGCTGAAACGGGTAGGGTTAACAAAGTGCCCAAGGTGAAATTACTTCCGGGCGTACCTAAACAACCGGGTGGAGTTGAGTGTGGCTATTATGTGATGCGGTATATGAAAGATATTATAAATAATGAAACTCTTTCATTTTCAACCAAGTGGGCGGCAAAGAGTCGGAAATCATATACCCAAGAACAACTTGATGAGGTGCGCATTGAAGTGGCTGACTACTTGCAGACTTTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

221

Amino Acids

24.87

Weight (kDa)

6.9

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	32 - 58	2.5e-08	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72280
prunus_persica	Prupe.4G145500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027131 RchiOBHm_Chr5g0027151 RchiOBHm_Chr5g0027161 RchiOBHm_Chr5g0027251
rosa_laevigata	RLG00000032999 RLG00000033001
rosa_multiflora	Rmu_sc0000882.1_g000035 Rmu_sc0006065.1_g000015
rosa_rugosa	Rorug05G0097800 Rorug05G0124600
rosa_samantha	Rh5AG191300 Rh5AG191800 Rh5BG189000 Rh5BG189500 Rh5CG210100 Rh5DG190800 Rh5DG191600
rosa_wichuraiana	Rw5G017440 Rw5G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	545
Acc16I	TGCGCA	1 cut(s)	629
AccB1I	GGYRCC	1 cut(s)	181
AccII	CGCG	1 cut(s)	297
AciI	CCGC	3 cut(s)	413, 526, 581
AcsI	RAATTY	2 cut(s)	226, 319
AfaI	GTAC	1 cut(s)	483
AgsI	TTSAA	6 cut(s)	38, 81, 139, 427, 570, 635
AjnI	CCWGG	1 cut(s)	167
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AluBI	AGCT	4 cut(s)	308, 334, 385, 422
AluI	AGCT	4 cut(s)	308, 334, 385, 422
Alw26I	GTCTC	1 cut(s)	158
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	5 cut(s)	275, 305, 308, 331, 382
ApoI	RAATTY	2 cut(s)	226, 319
AspLEI	GCGC	1 cut(s)	630
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	2 cut(s)	477, 495
AsuHPI	GGTGA	2 cut(s)	362, 475
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	459
BanI	GGYRCC	1 cut(s)	181
BbvI	GCAGC	5 cut(s)	287, 295, 317, 343, 394
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	169
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	2 cut(s)	477, 495
BcoDI	GTCTC	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	662
BisI	GCNGC	6 cut(s)	276, 306, 309, 332, 383, 582
BlsI	GCNGC	6 cut(s)	277, 307, 310, 333, 384, 583
Bme1390I	CCNGG	3 cut(s)	169, 477, 495
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	3 cut(s)	169, 477, 495
BmrI	ACTGGG	1 cut(s)	16
BmsI	GCATC	2 cut(s)	400, 513
BmuI	ACTGGG	1 cut(s)	16
BpmI	CTGGAG	2 cut(s)	356, 407
BpuMI	CCSGG	2 cut(s)	477, 495
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	459
Bse1I	ACTGG	2 cut(s)	22, 183
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	459
BseMI	GCAATG	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	22, 183
BseSI	GKGCMC	1 cut(s)	459
BseXI	GCAGC	5 cut(s)	287, 295, 317, 343, 394
BsgI	GTGCAG	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	172
BshNI	GGYRCC	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	476, 494
BsmAI	GTCTC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	2 cut(s)	211, 265
Bsp68I	TCGCGA	1 cut(s)	297
BspACI	CCGC	3 cut(s)	413, 526, 581
BspANI	GGCC	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	22, 183
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	2 cut(s)	211, 265
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	145
BstAPI	GCANNNNNTGC	1 cut(s)	658
BstC8I	GCNNGC	2 cut(s)	113, 174
BstDEI	CTNAG	1 cut(s)	249
BstFNI	CGCG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	2 cut(s)	214, 268
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	2 cut(s)	211, 265
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 419, 428, 658
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	3 cut(s)	167, 475, 493
BstSFI	CTRYAG	1 cut(s)	662
BstSLI	GKGCMC	1 cut(s)	459
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	5 cut(s)	287, 295, 317, 343, 394
BsuRI	GGCC	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	176
BtuMI	TCGCGA	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	113, 174
CfoI	GCGC	1 cut(s)	630
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	482
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	8 cut(s)	152, 172, 308, 334, 385, 422, 513, 641
CviKI_1	RGCY	8 cut(s)	152, 172, 308, 334, 385, 422, 513, 641
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	2 cut(s)	213, 267
DpnII	GATC	2 cut(s)	211, 265
Eco130I	CCWWGG	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	1 cut(s)	119
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FatI	CATG	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	6 cut(s)	276, 306, 309, 332, 383, 582
Fsp4HI	GCNGC	6 cut(s)	276, 306, 309, 332, 383, 582
FspAI	RTGCGCAY	1 cut(s)	629
FspI	TGCGCA	1 cut(s)	629
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	6 cut(s)	276, 306, 309, 332, 383, 582
GsuI	CTGGAG	2 cut(s)	356, 407
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	2 cut(s)	476, 494
HhaI	GCGC	1 cut(s)	630
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	4 cut(s)	48, 70, 260, 589
HpaI	GTTAAC	1 cut(s)	448
HpaII	CCGG	2 cut(s)	476, 494
HphI	GGTGA	2 cut(s)	362, 475
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	5 cut(s)	66, 127, 265, 402, 594
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	3 cut(s)	214, 236, 347
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	6 cut(s)	54, 158, 176, 275, 311, 652
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 419, 428, 658
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	1 cut(s)	628
Ksp22I	TGATCA	1 cut(s)	265
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	211, 265
Lsp1109I	GCAGC	5 cut(s)	287, 295, 317, 343, 394
LweI	GCATC	2 cut(s)	400, 513
MalI	GATC	2 cut(s)	213, 267
MboI	GATC	2 cut(s)	211, 265
MfeI	CAATTG	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	6 cut(s)	159, 226, 299, 319, 404, 467
MlyI	GAGTC	3 cut(s)	64, 254, 598
MmeI	TCCRAC	1 cut(s)	572
MnlI	CCTC	4 cut(s)	320, 350, 371, 616
MseI	TTAA	4 cut(s)	6, 236, 417, 447
MslI	CAYNNNNRTG	2 cut(s)	127, 635
MspA1I	CMGCKG	3 cut(s)	308, 334, 385
MspI	CCGG	2 cut(s)	476, 494
MspR9I	CCNGG	3 cut(s)	169, 477, 495
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	4 cut(s)	230, 419, 428, 658
NciI	CCSGG	2 cut(s)	477, 495
NdeII	GATC	2 cut(s)	211, 265
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	183
NruI	TCGCGA	1 cut(s)	297
NsbI	TGCGCA	1 cut(s)	629
PctI	GAATGC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	6 cut(s)	277, 307, 310, 333, 384, 583
PleI	GAGTC	3 cut(s)	64, 254, 597
PpsI	GAGTC	3 cut(s)	64, 254, 597
PsiI	TTATAA	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	119
PvuII	CAGCTG	3 cut(s)	308, 334, 385
RruI	TCGCGA	1 cut(s)	297
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
RseI	CAYNNNNRTG	2 cut(s)	127, 635
SaqAI	TTAA	4 cut(s)	6, 236, 417, 447
SatI	GCNGC	6 cut(s)	276, 306, 309, 332, 383, 582
Sau3AI	GATC	2 cut(s)	211, 265
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	3 cut(s)	64, 254, 598
ScrFI	CCNGG	3 cut(s)	169, 477, 495
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	2 cut(s)	400, 513
SfcI	CTRYAG	1 cut(s)	662
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	127, 635
Sse9I	AATT	6 cut(s)	159, 226, 299, 319, 404, 467
SsiI	CCGC	3 cut(s)	413, 526, 581
StyD4I	CCNGG	3 cut(s)	167, 475, 493
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	1 cut(s)	12
TasI	AATT	6 cut(s)	159, 226, 299, 319, 404, 467
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	4 cut(s)	6, 236, 417, 447
Tru9I	TTAA	4 cut(s)	6, 236, 417, 447
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	5 cut(s)	275, 305, 308, 331, 382
TspDTI	ATGAA	4 cut(s)	194, 548, 552, 567
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	2 cut(s)	226, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.