Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009858

Physical Location & Seq

Genomic Coordinates Reverse (-)

22185413 .. 22196169

Gene Structure 10757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G017440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGTGAAGGAAAAGAATGTGAAGAGATGGGTTTTAGTGGGTGCTGTGGTTGTGGTCTTATTAGCCATAGCTCTCACCTCTACCAGAGATTTTAATTCTAAACTCAACCTTTCTCTGTTTTTCAAGAATCCCAGTTCCTGCCAATGTCCTCAGGATTCAAAGAAATACAGTGGCCTTGTTGAGGACTGCTGTTGTGATTATGAAACGGCGGACAGTGTTAATGCAGAGGTGTTGCATCCTCTGCTACAAGAGATTGTTAAAACTCCGTTTTTTCGATATTTTAAGGCCAAGCTGTGGTGTGACTGTGCCTTCTGGACTGAAGATGGTATGTGCCTCCTGCGTGACTGCAGCGTCTGCGAATGCCCAGAAAATGAATTTCCGGAACCTTTCAAGAGGCCCTTTCACCGTGGCCTTCCATCTGATAGTTTGGTTTGTCAAGATGATAAGCTGCAGGGGTCTGTTGACCGCACTCTAGACAGTAGAGCTTTCAGAGGCTGGATTGAGACAGATAACCCTTGTACAAATGATGACGAGACTGATATGATGACCTACGTGAACCTTCTACTGAACCCTGAACGTTACACTGGCTACACTGGTCCATCAGCAAGAAGGATATGGGATGCTGTTTATTCTGAAAATTGCCCAAAATATTCATCTCAGGACATTTGCCAGGAGCAAAGAGTATTGTACAAATTAATATCAGGTCTTCACTCGTCAATTTCAATCCACATAGCTGCTGATTATCTTCTAGACAAGATTACCAATCTGTGGGATCAAAACATGGAATTGATGCATGATCGCGTTTTAAAATATCCAGATCGTGTTCAGAATTTGTACTTCGCATTCCTCTTTGTTCTCCAGGCAGTGACAAAAGCTGCAGATTACTTAGAGCAGGCTGAGTATGATACAGGTAATCATGAGGAAGACCTGAGAACACAGTTTTTGATGAGGCAGCTACTTTACAATCCTAAACTCCAAGCTGCATGTCCCTTACCGTTTGATGAAGCAAAGCTCTGGAAGGGTCAGAGTGGACCACAATTGAAGCAACAAATTCAAAAGAAATTCAGAAACATCAGTGCATTAATGGATTGTGTGGGATGTGAGAAATGTCGGCTCTGGGGAAAGCTTCAAGTTCTTGGTCTTGGTACTGCATTGAAGATCCTCTTTTCTGTTGATGGTAAAAATCATCAAGATCAACCTCTGCAGCTGCAACGAAATGAAGTGATAGCTCTCGTAAATCTGCTAAATCGACTCTCTGAATCTGTCAAATCTGCTTGTCAAAGCAGATATTTAATCAAGAAAGTAGTGGAAGGAGGACGTGTTGCTGAACCTATTTCTATACAAAACAATCAGTACATTACAAAGAATATGGGAGGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

460

Amino Acids

52.68

Weight (kDa)

6.07

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERO1	PF04137	78 - 424	3e-120	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72280
prunus_persica	Prupe.4G145500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027131 RchiOBHm_Chr5g0027151 RchiOBHm_Chr5g0027161 RchiOBHm_Chr5g0027251
rosa_laevigata	RLG00000032999 RLG00000033001
rosa_multiflora	Rmu_sc0000882.1_g000035 Rmu_sc0006065.1_g000015
rosa_rugosa	Rorug05G0097800 Rorug05G0124600
rosa_samantha	Rh5AG191300 Rh5AG191800 Rh5BG189000 Rh5BG189500 Rh5CG210100 Rh5DG190800 Rh5DG191600
rosa_wichuraiana	Rw5G017440 Rw5G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AccB7I	CCANNNNNTGG	2 cut(s)	294, 768
AccII	CGCG	1 cut(s)	801
AccIII	TCCGGA	1 cut(s)	379
AciI	CCGC	2 cut(s)	209, 466
AclI	AACGTT	1 cut(s)	577
AclWI	GGATC	2 cut(s)	780, 1153
AcsI	RAATTY	4 cut(s)	374, 829, 1050, 1061
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	5 cut(s)	520, 689, 836, 1147, 1355
AfiI	CCNNNNNNNGG	3 cut(s)	181, 294, 768
AflIII	ACRYGT	1 cut(s)	1318
AgsI	TTSAA	8 cut(s)	124, 159, 391, 723, 1042, 1055, 1130, 1156
AjiI	CACGTC	1 cut(s)	1319
AjnI	CCWGG	2 cut(s)	669, 858
Alw26I	GTCTC	2 cut(s)	497, 527
AlwI	GGATC	2 cut(s)	780, 1153
AlwNI	CAGNNNCTG	3 cut(s)	138, 354, 495
Aor13HI	TCCGGA	1 cut(s)	379
AoxI	GGCC	4 cut(s)	172, 285, 395, 409
ApeKI	GCWGC	8 cut(s)	348, 448, 734, 875, 952, 980, 1204, 1207
ApoI	RAATTY	4 cut(s)	374, 829, 1050, 1061
AseI	ATTAAT	2 cut(s)	695, 1082
AspS9I	GGNCC	3 cut(s)	396, 596, 1031
AsuHPI	GGTGA	3 cut(s)	16, 67, 395
AvaII	GGWCC	2 cut(s)	596, 1031
AxyI	CCTNAGG	1 cut(s)	150
BbsI	GAAGAC	2 cut(s)	698, 930
BbvI	GCAGC	8 cut(s)	360, 435, 721, 862, 964, 967, 1194, 1216
BccI	CCATC	5 cut(s)	21, 317, 424, 607, 1169
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	2 cut(s)	671, 860
BcoDI	GTCTC	2 cut(s)	497, 527
BfaI	CTAG	2 cut(s)	473, 749
BfmI	CTRYAG	4 cut(s)	346, 449, 876, 1202
BisI	GCNGC	8 cut(s)	349, 449, 735, 876, 953, 981, 1205, 1208
BlsI	GCNGC	8 cut(s)	350, 450, 736, 877, 954, 982, 1206, 1209
Bme1390I	CCNGG	2 cut(s)	671, 860
Bme18I	GGWCC	2 cut(s)	596, 1031
BmgBI	CACGTC	1 cut(s)	1319
BmgT120I	GGNCC	3 cut(s)	396, 596, 1031
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	671, 860
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	3 cut(s)	244, 610, 780
BmuI	ACTGGG	1 cut(s)	126
BpiI	GAAGAC	2 cut(s)	698, 930
BpmI	CTGGAG	1 cut(s)	842
BsaAI	YACGTR	1 cut(s)	553
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	1305, 1335
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 294, 768
Bse1I	ACTGG	3 cut(s)	132, 589, 598
Bse21I	CCTNAGG	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	2 cut(s)	671, 860
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	3 cut(s)	235, 625, 1103
BseLI	CCNNNNNNNGG	3 cut(s)	181, 294, 768
BseMII	CTCAG	4 cut(s)	164, 671, 888, 920
BseNI	ACTGG	3 cut(s)	132, 589, 598
BseXI	GCAGC	8 cut(s)	360, 435, 721, 862, 964, 967, 1194, 1216
Bsh1236I	CGCG	1 cut(s)	801
BshFI	GGCC	4 cut(s)	174, 287, 397, 411
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	972
BslI	CCNNNNNNNGG	3 cut(s)	181, 294, 768
BsmAI	GTCTC	2 cut(s)	497, 527
BsmFI	GGGAC	1 cut(s)	972
BsmI	GAATGC	2 cut(s)	365, 842
BsnI	GGCC	4 cut(s)	174, 287, 397, 411
Bsp13I	TCCGGA	1 cut(s)	379
Bsp1407I	TGTACA	2 cut(s)	518, 687
Bsp143I	GATC	5 cut(s)	772, 796, 817, 1158, 1192
BspACI	CCGC	2 cut(s)	209, 466
BspANI	GGCC	4 cut(s)	174, 287, 397, 411
BspCNI	CTCAG	4 cut(s)	163, 670, 889, 921
BspEI	TCCGGA	1 cut(s)	379
BspFNI	CGCG	1 cut(s)	801
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	1 cut(s)	384
BspMAI	CTGCAG	4 cut(s)	350, 453, 880, 1206
BspPI	GGATC	2 cut(s)	780, 1153
BsrGI	TGTACA	2 cut(s)	518, 687
BsrI	ACTGG	3 cut(s)	132, 589, 598
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	5 cut(s)	772, 796, 817, 1158, 1192
Bst2UI	CCWGG	2 cut(s)	671, 860
Bst4CI	ACNGT	7 cut(s)	170, 215, 305, 407, 479, 939, 996
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	2 cut(s)	241, 354
BstAUI	TGTACA	2 cut(s)	518, 687
BstBAI	YACGTR	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	894
BstDEI	CTNAG	5 cut(s)	150, 657, 886, 897, 929
BstDSI	CCRYGG	1 cut(s)	406
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	3 cut(s)	235, 625, 1103
BstFNI	CGCG	1 cut(s)	801
BstKTI	GATC	5 cut(s)	775, 799, 820, 1161, 1195
BstMAI	GTCTC	2 cut(s)	497, 527
BstMBI	GATC	5 cut(s)	772, 796, 817, 1158, 1192
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 354
BstNI	CCWGG	2 cut(s)	671, 860
BstNSI	RCATGY	1 cut(s)	987
BstSCI	CCNGG	2 cut(s)	669, 858
BstSFI	CTRYAG	4 cut(s)	346, 449, 876, 1202
BstUI	CGCG	1 cut(s)	801
BstV1I	GCAGC	8 cut(s)	360, 435, 721, 862, 964, 967, 1194, 1216
BstV2I	GAAGAC	2 cut(s)	698, 930
BstX2I	RGATCY	1 cut(s)	1158
BstYI	RGATCY	1 cut(s)	1158
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	4 cut(s)	174, 287, 397, 411
BtgI	CCRYGG	1 cut(s)	406
BtrI	CACGTC	1 cut(s)	1319
BtsCI	GGATG	3 cut(s)	235, 625, 1103
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	6 cut(s)	175, 220, 582, 591, 870, 1081
Cac8I	GCNNGC	1 cut(s)	894
CaiI	CAGNNNCTG	3 cut(s)	138, 354, 495
CciI	TCATGA	1 cut(s)	916
Cfr13I	GGNCC	3 cut(s)	396, 596, 1031
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	5 cut(s)	519, 688, 835, 1146, 1354
CviAII	CATG	4 cut(s)	781, 794, 917, 984
CviQI	GTAC	5 cut(s)	519, 688, 835, 1146, 1354
DdeI	CTNAG	5 cut(s)	150, 657, 886, 897, 929
DpnI	GATC	5 cut(s)	774, 798, 819, 1160, 1194
DpnII	GATC	5 cut(s)	772, 796, 817, 1158, 1192
DraI	TTTAAA	1 cut(s)	807
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	596, 1031
Eco57I	CTGAAG	1 cut(s)	339
Eco81I	CCTNAGG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	2 cut(s)	669, 858
EcoT22I	ATGCAT	1 cut(s)	795
FaeI	CATG	4 cut(s)	784, 797, 920, 987
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 1148, 1180
FaqI	GGGAC	1 cut(s)	972
FatI	CATG	4 cut(s)	780, 793, 916, 983
Fnu4HI	GCNGC	8 cut(s)	349, 449, 735, 876, 953, 981, 1205, 1208
FokI	GGATG	3 cut(s)	222, 632, 1110
Fsp4HI	GCNGC	8 cut(s)	349, 449, 735, 876, 953, 981, 1205, 1208
FspBI	CTAG	2 cut(s)	473, 749
GluI	GCNGC	8 cut(s)	349, 449, 735, 876, 953, 981, 1205, 1208
GsuI	CTGGAG	1 cut(s)	842
HaeIII	GGCC	4 cut(s)	174, 287, 397, 411
HapII	CCGG	1 cut(s)	380
HgaI	GACGC	1 cut(s)	340
Hin1II	CATG	4 cut(s)	784, 797, 920, 987
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	1124
HinfI	GANTC	4 cut(s)	127, 155, 1251, 1259
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	3 cut(s)	16, 67, 395
Hpy166II	GTNNAC	3 cut(s)	463, 556, 1031
Hpy188I	TCNGA	7 cut(s)	421, 491, 634, 828, 1026, 1067, 1258
Hpy8I	GTNNAC	3 cut(s)	463, 556, 1031
HpyAV	CCTTC	6 cut(s)	319, 422, 569, 603, 1012, 1304
HpyCH4III	ACNGT	7 cut(s)	170, 215, 305, 407, 479, 939, 996
HpyCH4IV	ACGT	3 cut(s)	552, 577, 1318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 354
HpyF3I	CTNAG	5 cut(s)	150, 657, 886, 897, 929
HpySE526I	ACGT	3 cut(s)	552, 577, 1318
Hsp92II	CATG	4 cut(s)	784, 797, 920, 987
Kpn2I	TCCGGA	1 cut(s)	379
Kzo9I	GATC	5 cut(s)	772, 796, 817, 1158, 1192
LmnI	GCTCC	1 cut(s)	673
Lsp1109I	GCAGC	8 cut(s)	360, 435, 721, 862, 964, 967, 1194, 1216
LweI	GCATC	3 cut(s)	244, 610, 780
MaeI	CTAG	2 cut(s)	473, 749
MaeII	ACGT	3 cut(s)	552, 577, 1318
MaeIII	GTNAC	4 cut(s)	299, 341, 578, 865
MalI	GATC	5 cut(s)	774, 798, 819, 1160, 1194
MboI	GATC	5 cut(s)	772, 796, 817, 1158, 1192
MboII	GAAGA	6 cut(s)	34, 332, 698, 737, 935, 1168
MfeI	CAATTG	1 cut(s)	1037
MflI	RGATCY	1 cut(s)	1158
MlyI	GAGTC	1 cut(s)	1245
Mph1103I	ATGCAT	1 cut(s)	795
MroI	TCCGGA	1 cut(s)	379
MseI	TTAA	8 cut(s)	93, 219, 258, 282, 695, 806, 1082, 1292
MspA1I	CMGCKG	1 cut(s)	1207
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	671, 860
MunI	CAATTG	1 cut(s)	1037
Mva1269I	GAATGC	2 cut(s)	365, 842
MvaI	CCWGG	2 cut(s)	671, 860
MvnI	CGCG	1 cut(s)	801
MwoI	GCNNNNNNNGC	2 cut(s)	241, 354
NdeII	GATC	5 cut(s)	772, 796, 817, 1158, 1192
NlaIII	CATG	4 cut(s)	784, 797, 920, 987
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	3 cut(s)	299, 341, 865
NsiI	ATGCAT	1 cut(s)	795
NspI	RCATGY	1 cut(s)	987
PagI	TCATGA	1 cut(s)	916
PctI	GAATGC	2 cut(s)	365, 842
PfeI	GAWTC	3 cut(s)	127, 155, 1259
PflMI	CCANNNNNTGG	2 cut(s)	294, 768
PkrI	GCNGC	8 cut(s)	350, 450, 736, 877, 954, 982, 1206, 1209
PleI	GAGTC	1 cut(s)	1245
PpsI	GAGTC	1 cut(s)	1245
Ppu21I	YACGTR	1 cut(s)	553
PshBI	ATTAAT	2 cut(s)	695, 1082
Psp1406I	AACGTT	1 cut(s)	577
Psp6I	CCWGG	2 cut(s)	669, 858
PspGI	CCWGG	2 cut(s)	669, 858
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	3 cut(s)	396, 596, 1031
PstI	CTGCAG	4 cut(s)	350, 453, 880, 1206
PstNI	CAGNNNCTG	3 cut(s)	138, 354, 495
PsuI	RGATCY	1 cut(s)	1158
PvuII	CAGCTG	1 cut(s)	1207
RsaI	GTAC	5 cut(s)	520, 689, 836, 1147, 1355
RsaNI	GTAC	5 cut(s)	519, 688, 835, 1146, 1354
SaqAI	TTAA	8 cut(s)	93, 219, 258, 282, 695, 806, 1082, 1292
SatI	GCNGC	8 cut(s)	349, 449, 735, 876, 953, 981, 1205, 1208
Sau3AI	GATC	5 cut(s)	772, 796, 817, 1158, 1192
Sau96I	GGNCC	3 cut(s)	396, 596, 1031
SchI	GAGTC	1 cut(s)	1245
ScrFI	CCNGG	2 cut(s)	671, 860
SfaNI	GCATC	3 cut(s)	244, 610, 780
SfcI	CTRYAG	4 cut(s)	346, 449, 876, 1202
SinI	GGWCC	2 cut(s)	596, 1031
SsiI	CCGC	2 cut(s)	209, 466
SspI	AATATT	1 cut(s)	650
SspMI	CTAG	2 cut(s)	473, 749
StyD4I	CCNGG	2 cut(s)	669, 858
TaaI	ACNGT	7 cut(s)	170, 215, 305, 407, 479, 939, 996
TaiI	ACGT	3 cut(s)	555, 580, 1321
TaqI	TCGA	2 cut(s)	274, 1249
TatI	WGTACW	4 cut(s)	518, 687, 834, 1353
TfiI	GAWTC	3 cut(s)	127, 155, 1259
Tru1I	TTAA	8 cut(s)	93, 219, 258, 282, 695, 806, 1082, 1292
Tru9I	TTAA	8 cut(s)	93, 219, 258, 282, 695, 806, 1082, 1292
TscAI	CASTG	6 cut(s)	175, 220, 589, 598, 870, 1081
TseFI	GTSAC	3 cut(s)	299, 341, 865
TseI	GCWGC	8 cut(s)	348, 448, 734, 875, 952, 980, 1204, 1207
Tsp45I	GTSAC	3 cut(s)	299, 341, 865
TspDTI	ATGAA	5 cut(s)	216, 387, 642, 1017, 1233
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	6 cut(s)	175, 220, 589, 598, 870, 1081
Van91I	CCANNNNNTGG	2 cut(s)	294, 768
VpaK11BI	GGWCC	2 cut(s)	596, 1031
VspI	ATTAAT	2 cut(s)	695, 1082
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	4 cut(s)	374, 829, 1050, 1061
XbaI	TCTAGA	2 cut(s)	472, 748
XceI	RCATGY	1 cut(s)	987
XspI	CTAG	2 cut(s)	473, 749
Zsp2I	ATGCAT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.