Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009858

Physical Location & Seq

Genomic Coordinates Reverse (-)

22040630 .. 22054996

Gene Structure 14367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG191300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTTCCTATTGCGGGATTGCAGCATATGTCAATGCCCAGAAAATGAATTTCCAGAACCTTTTAAAAGGCGCTTGCAGCTGTGGTGTGACTGTCCCTTTTGGACTGAAGATGGCATGTTCCTATTGCGGGATTGCAGCATATGTGAATGCCCAGAAAACGAATTTCCAGAACCTTTTAAAAGGCGCTTGCACCGTGGCCTTACATCTGACAGTATGGTTTGTCAAGAGGAAAAGCTTCAGGGTTCTGTTGACCGCACGTTAGACAGTAGAGTTTTCAGAGGCTGGATTGATACAGATAACCCTTGGATAATTGATGATGAGAATGGTAATGGTGAGATGACATATGTGAACCTTCTACTAAACCCTGAACGTTACACTGGCTACACAGGTCCATCGGCTAGAAGGATATGGGATGCTGTTTACTCTGAAAATTGCCCAAAATATTCATCTCAGGACATTTGCCAGGAGCAAAGAGTATTGTACAAATTAATATCAGATCGTGTTCAGAATTTGTACTTCGCATTCCTCTTTGTTCTCCAGGCAGTGACAAAAGCTGCAGATTACTTAGAGCAGGCTGAGTATGATACAGGTAATCATGAGGAAGACCTGAGAACACAGTTTTTGATGAGGCAGCTACTTTACAATCCTAAACTCCAAGCTGCATGTCCCTTACCGTTTGATGAAGCAAAGCTCTGGAAGGGTCAGAGTGGACCACAATTGAAGCAACAAATTCAAAAGAAATTCAGAAACATCAGTGCATTAATGGATTGTGTGGGATGTGAGAAATGTCGGCTCTGGGGAAAGCTTCAAGTTCTTGGTCTTGGTACTGCATTGAAGATCCTCTTTTCTGTTGATGGTAAAAATCATCAAGATCAACCTCTGCAGCTGCAACGAAATGAAGTGATAGCTCTCGTAAATCTGCTAAATCGACTCTCTGAATCTGTCAAATCTGCTTGTCAAAGCAGATATTTAATCAAGAAAGTAGTGGAAGGAGGACGTGTTGCTGAACCTATTTCTATACAAAACAATCAGTACATTACAAAGAATATGGGAGGCGGTGATCCCGATCACGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

358

Amino Acids

41.32

Weight (kDa)

5.61

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERO1	PF04137	24 - 165	3.4e-31	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
ERO1	PF04137	166 - 317	1e-55	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72280
prunus_persica	Prupe.4G145500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027131 RchiOBHm_Chr5g0027151 RchiOBHm_Chr5g0027161 RchiOBHm_Chr5g0027251
rosa_laevigata	RLG00000032999 RLG00000033001
rosa_multiflora	Rmu_sc0000882.1_g000035 Rmu_sc0006065.1_g000015
rosa_rugosa	Rorug05G0097800 Rorug05G0124600
rosa_samantha	Rh5AG191300 Rh5AG191800 Rh5BG189000 Rh5BG189500 Rh5CG210100 Rh5DG190800 Rh5DG191600
rosa_wichuraiana	Rw5G017440 Rw5G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	13, 127, 253, 1056
AclI	AACGTT	1 cut(s)	370
AclWI	GGATC	2 cut(s)	832, 1055
AcsI	RAATTY	5 cut(s)	47, 161, 508, 729, 740
AcuI	CTGAAG	2 cut(s)	126, 221
AfaI	GTAC	4 cut(s)	482, 515, 826, 1034
AfiI	CCNNNNNNNGG	2 cut(s)	13, 127
AflIII	ACRYGT	1 cut(s)	997
AgsI	TTSAA	4 cut(s)	721, 734, 809, 835
AjiI	CACGTC	1 cut(s)	998
AjnI	CCWGG	2 cut(s)	462, 537
AluBI	AGCT	9 cut(s)	79, 235, 554, 634, 659, 691, 805, 886, 908
AluI	AGCT	9 cut(s)	79, 235, 554, 634, 659, 691, 805, 886, 908
AlwI	GGATC	2 cut(s)	832, 1055
AlwNI	CAGNNNCTG	1 cut(s)	282
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	8 cut(s)	21, 76, 135, 554, 631, 659, 883, 886
ApoI	RAATTY	5 cut(s)	47, 161, 508, 729, 740
AseI	ATTAAT	2 cut(s)	488, 761
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	2 cut(s)	72, 186
AspS9I	GGNCC	2 cut(s)	389, 710
AsuHPI	GGTGA	2 cut(s)	344, 1070
AvaII	GGWCC	2 cut(s)	389, 710
BbsI	GAAGAC	1 cut(s)	609
BbvI	GCAGC	8 cut(s)	33, 88, 147, 541, 643, 646, 873, 895
BccI	CCATC	3 cut(s)	104, 400, 848
BciT130I	CCWGG	2 cut(s)	464, 539
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	2 cut(s)	555, 881
BfoI	RGCGCY	2 cut(s)	73, 187
BisI	GCNGC	8 cut(s)	22, 77, 136, 555, 632, 660, 884, 887
BlsI	GCNGC	8 cut(s)	23, 78, 137, 556, 633, 661, 885, 888
Bme1390I	CCNGG	2 cut(s)	464, 539
Bme18I	GGWCC	2 cut(s)	389, 710
BmgBI	CACGTC	1 cut(s)	998
BmgT120I	GGNCC	2 cut(s)	389, 710
BmrFI	CCNGG	2 cut(s)	464, 539
BmsI	GCATC	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	609
BpmI	CTGGAG	1 cut(s)	521
BsaBI	GATNNNNATC	1 cut(s)	1065
BsaJI	CCNNGG	2 cut(s)	193, 302
BsaXI	ACNNNNNCTCC	2 cut(s)	984, 1014
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 127
Bse1I	ACTGG	1 cut(s)	382
Bse8I	GATNNNNATC	1 cut(s)	1065
BseBI	CCWGG	2 cut(s)	464, 539
BseDI	CCNNGG	2 cut(s)	193, 302
BseGI	GGATG	2 cut(s)	418, 782
BseJI	GATNNNNATC	1 cut(s)	1065
BseLI	CCNNNNNNNGG	2 cut(s)	13, 127
BseMII	CTCAG	3 cut(s)	464, 567, 599
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	8 cut(s)	33, 88, 147, 541, 643, 646, 873, 895
BshFI	GGCC	1 cut(s)	198
BslFI	GGGAC	2 cut(s)	78, 651
BslI	CCNNNNNNNGG	2 cut(s)	13, 127
BsmFI	GGGAC	2 cut(s)	78, 651
BsmI	GAATGC	2 cut(s)	152, 521
BsnI	GGCC	1 cut(s)	198
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	5 cut(s)	496, 837, 871, 1060, 1066
BspACI	CCGC	4 cut(s)	13, 127, 253, 1056
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	3 cut(s)	463, 568, 600
BspHI	TCATGA	1 cut(s)	595
BspMAI	CTGCAG	2 cut(s)	559, 885
BspPI	GGATC	2 cut(s)	832, 1055
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	193, 302
BssMI	GATC	5 cut(s)	496, 837, 871, 1060, 1066
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	464, 539
Bst4CI	ACNGT	6 cut(s)	92, 194, 212, 266, 618, 675
BstAUI	TGTACA	1 cut(s)	480
BstC8I	GCNNGC	3 cut(s)	74, 188, 573
BstDEI	CTNAG	5 cut(s)	450, 565, 576, 608, 1074
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	2 cut(s)	418, 782
BstH2I	RGCGCY	2 cut(s)	73, 187
BstHHI	GCGC	2 cut(s)	72, 186
BstKTI	GATC	5 cut(s)	499, 840, 874, 1063, 1069
BstMBI	GATC	5 cut(s)	496, 837, 871, 1060, 1066
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	2 cut(s)	464, 539
BstNSI	RCATGY	2 cut(s)	118, 666
BstSCI	CCNGG	2 cut(s)	462, 537
BstSFI	CTRYAG	2 cut(s)	555, 881
BstV1I	GCAGC	8 cut(s)	33, 88, 147, 541, 643, 646, 873, 895
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	1 cut(s)	837
BstYI	RGATCY	1 cut(s)	837
BsuRI	GGCC	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	193
BtrI	CACGTC	1 cut(s)	998
BtsCI	GGATG	2 cut(s)	418, 782
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	3 cut(s)	375, 549, 760
Cac8I	GCNNGC	3 cut(s)	74, 188, 573
CaiI	CAGNNNCTG	1 cut(s)	282
CciI	TCATGA	1 cut(s)	595
CfoI	GCGC	2 cut(s)	72, 186
Cfr13I	GGNCC	2 cut(s)	389, 710
Csp6I	GTAC	4 cut(s)	481, 514, 825, 1033
CviAII	CATG	3 cut(s)	115, 596, 663
CviQI	GTAC	4 cut(s)	481, 514, 825, 1033
DdeI	CTNAG	5 cut(s)	450, 565, 576, 608, 1074
DpnI	GATC	5 cut(s)	498, 839, 873, 1062, 1068
DpnII	GATC	5 cut(s)	496, 837, 871, 1060, 1066
DraI	TTTAAA	2 cut(s)	64, 178
Eco130I	CCWWGG	1 cut(s)	302
Eco47I	GGWCC	2 cut(s)	389, 710
Eco57I	CTGAAG	2 cut(s)	126, 221
EcoRII	CCWGG	2 cut(s)	462, 537
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	3 cut(s)	118, 599, 666
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FaqI	GGGAC	2 cut(s)	78, 651
FatI	CATG	3 cut(s)	114, 595, 662
FauI	CCCGC	2 cut(s)	6, 120
FauNDI	CATATG	3 cut(s)	26, 140, 343
Fnu4HI	GCNGC	8 cut(s)	22, 77, 136, 555, 632, 660, 884, 887
FokI	GGATG	2 cut(s)	425, 789
Fsp4HI	GCNGC	8 cut(s)	22, 77, 136, 555, 632, 660, 884, 887
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	2 cut(s)	71, 185
GluI	GCNGC	8 cut(s)	22, 77, 136, 555, 632, 660, 884, 887
GsuI	CTGGAG	1 cut(s)	521
HaeII	RGCGCY	2 cut(s)	73, 187
HaeIII	GGCC	1 cut(s)	198
HhaI	GCGC	2 cut(s)	72, 186
Hin1II	CATG	3 cut(s)	118, 599, 666
Hin6I	GCGC	2 cut(s)	70, 184
HinP1I	GCGC	2 cut(s)	70, 184
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	2 cut(s)	233, 803
HinfI	GANTC	2 cut(s)	930, 938
HphI	GGTGA	2 cut(s)	344, 1070
Hpy166II	GTNNAC	4 cut(s)	250, 349, 421, 710
Hpy188I	TCNGA	8 cut(s)	208, 278, 427, 496, 507, 705, 746, 937
Hpy188III	TCNNGA	9 cut(s)	53, 167, 224, 452, 596, 694, 869, 976, 1064
Hpy8I	GTNNAC	4 cut(s)	250, 349, 421, 710
HpyAV	CCTTC	4 cut(s)	362, 396, 691, 983
HpyCH4III	ACNGT	6 cut(s)	92, 194, 212, 266, 618, 675
HpyCH4IV	ACGT	3 cut(s)	257, 370, 997
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	5 cut(s)	450, 565, 576, 608, 1074
HpySE526I	ACGT	3 cut(s)	257, 370, 997
Hsp92II	CATG	3 cut(s)	118, 599, 666
HspAI	GCGC	2 cut(s)	70, 184
Kzo9I	GATC	5 cut(s)	496, 837, 871, 1060, 1066
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	8 cut(s)	33, 88, 147, 541, 643, 646, 873, 895
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	3 cut(s)	257, 370, 997
MaeIII	GTNAC	3 cut(s)	86, 371, 544
MalI	GATC	5 cut(s)	498, 839, 873, 1062, 1068
MboI	GATC	5 cut(s)	496, 837, 871, 1060, 1066
MboII	GAAGA	3 cut(s)	119, 614, 847
MfeI	CAATTG	1 cut(s)	716
MflI	RGATCY	1 cut(s)	837
MluCI	AATT	9 cut(s)	47, 161, 309, 430, 485, 508, 716, 729, 740
MlyI	GAGTC	1 cut(s)	924
MnlI	CCTC	9 cut(s)	220, 272, 536, 592, 621, 851, 888, 986, 1046
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	5 cut(s)	63, 177, 488, 761, 971
MspA1I	CMGCKG	2 cut(s)	79, 886
MspR9I	CCNGG	2 cut(s)	464, 539
MunI	CAATTG	1 cut(s)	716
Mva1269I	GAATGC	2 cut(s)	152, 521
MvaI	CCWGG	2 cut(s)	464, 539
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeI	CATATG	3 cut(s)	26, 140, 343
NdeII	GATC	5 cut(s)	496, 837, 871, 1060, 1066
NlaIII	CATG	3 cut(s)	118, 599, 666
NmuCI	GTSAC	2 cut(s)	86, 544
NspI	RCATGY	2 cut(s)	118, 666
PagI	TCATGA	1 cut(s)	595
PctI	GAATGC	2 cut(s)	152, 521
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	938
PkrI	GCNGC	8 cut(s)	23, 78, 137, 556, 633, 661, 885, 888
PleI	GAGTC	1 cut(s)	924
PpsI	GAGTC	1 cut(s)	924
PshBI	ATTAAT	2 cut(s)	488, 761
Psp1406I	AACGTT	1 cut(s)	370
Psp6I	CCWGG	2 cut(s)	462, 537
PspGI	CCWGG	2 cut(s)	462, 537
PspPI	GGNCC	2 cut(s)	389, 710
PstI	CTGCAG	2 cut(s)	559, 885
PstNI	CAGNNNCTG	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	837
PvuII	CAGCTG	2 cut(s)	79, 886
RsaI	GTAC	4 cut(s)	482, 515, 826, 1034
RsaNI	GTAC	4 cut(s)	481, 514, 825, 1033
SaqAI	TTAA	5 cut(s)	63, 177, 488, 761, 971
SatI	GCNGC	8 cut(s)	22, 77, 136, 555, 632, 660, 884, 887
Sau3AI	GATC	5 cut(s)	496, 837, 871, 1060, 1066
Sau96I	GGNCC	2 cut(s)	389, 710
SchI	GAGTC	1 cut(s)	924
ScrFI	CCNGG	2 cut(s)	464, 539
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	2 cut(s)	555, 881
SinI	GGWCC	2 cut(s)	389, 710
Sse9I	AATT	9 cut(s)	47, 161, 309, 430, 485, 508, 716, 729, 740
SsiI	CCGC	4 cut(s)	13, 127, 253, 1056
SspI	AATATT	1 cut(s)	443
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	462, 537
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	6 cut(s)	92, 194, 212, 266, 618, 675
TaiI	ACGT	3 cut(s)	260, 373, 1000
TaqI	TCGA	1 cut(s)	928
TasI	AATT	9 cut(s)	47, 161, 309, 430, 485, 508, 716, 729, 740
TatI	WGTACW	3 cut(s)	480, 513, 1032
TfiI	GAWTC	1 cut(s)	938
Tru1I	TTAA	5 cut(s)	63, 177, 488, 761, 971
Tru9I	TTAA	5 cut(s)	63, 177, 488, 761, 971
TscAI	CASTG	3 cut(s)	382, 549, 760
TseFI	GTSAC	2 cut(s)	86, 544
TseI	GCWGC	8 cut(s)	21, 76, 135, 554, 631, 659, 883, 886
Tsp45I	GTSAC	2 cut(s)	86, 544
TspDTI	ATGAA	4 cut(s)	60, 435, 696, 912
TspRI	CASTG	3 cut(s)	382, 549, 760
VpaK11BI	GGWCC	2 cut(s)	389, 710
VspI	ATTAAT	2 cut(s)	488, 761
XapI	RAATTY	5 cut(s)	47, 161, 508, 729, 740
XceI	RCATGY	2 cut(s)	118, 666
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.