Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009858

Physical Location & Seq

Genomic Coordinates Reverse (-)

21955542 .. 21958163

Gene Structure 2622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033001

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGATAGGCCGGCCGTGGTGTGACTGTCCCTTTTGGACTGAAGATGGCATGTTCCTATTGCAGGATTGCAGCATATGTGAATGCCCAGAAAATGAATTTCCAGAACCTTTTAAAAGGCGCTTGCACCGTGGCCTTACATCTGACAGTTTGGTTTGTCAAGAGGAAAAGCTTCAGGGTTCTGTTGACTGCACGTTAGACAGTAGAGTTTTTAGAGGCTGGATTGATGCAGATAACCCTTGGATAATTGATGATGAGAATGATAATGGTGAGATGACATATGTGAACCTTCTACTAAACCCTGAACGTTACACTGGCTACACAGGTCCATCGGCTAGAGTACTATACAAACTAATATCTGGTCTTCACTCCTCCATTTCAATTCACATAGCTGCTGATTATCTTCTGGACAAGATCACAAATCTGTGGGGTCAAAATCTGAAGGTCATGCATGGTCGTGTTTTAAAATATCCATATCGTATCCAGAATTTGTACTTCTCATTCCTCTTTAGCAGGCTTGAGTATGATACTGGTAATCATGAGGAAGACCTGAAAACAGAGTCTTTGATGAGGCAGCTACTCTATAATCCTAAACTCCAAGCTGCATGTCCTCTACCGTTTGATGAAGCAAAGCTCTGGAAAGGTCAAAGTGGGCCACAGTTGAAGCAGCAAATTCAAAAGCAATTCAGAAACATTAGTGCATTAATGCATTGTGTGGGATGTGAAAAGTGTCGGCTCTGGGGAAAGCTTCAAGTTCTTGGTCTTTTGCAGCTGCAACGAAATGAAGTGATTGCTCTTGTAAATCTGCTAAATCGACTTTCTGAATCTGTCGAAATTGTTCGTCAAAGTGGTGATTCAATCAGGAAAGTAGCGGAAGGACGTGTTATTGAACCTTCCATACGAACAATCAGCACGTTACAAAGATTATGGGAGGCTGTCATCCCGATCAGGCTTAGATATGTGACTATTCCTGTTGTACATTGCAAGCAATTAAGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

333

Amino Acids

38.36

Weight (kDa)

7.02

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERO1	PF04137	7 - 112	3.3e-17	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
ERO1	PF04137	112 - 278	1.2e-44	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72280
prunus_persica	Prupe.4G145500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027131 RchiOBHm_Chr5g0027151 RchiOBHm_Chr5g0027161 RchiOBHm_Chr5g0027251
rosa_laevigata	RLG00000032999 RLG00000033001
rosa_multiflora	Rmu_sc0000882.1_g000035 Rmu_sc0006065.1_g000015
rosa_rugosa	Rorug05G0097800 Rorug05G0124600
rosa_samantha	Rh5AG191300 Rh5AG191800 Rh5BG189000 Rh5BG189500 Rh5CG210100 Rh5DG190800 Rh5DG191600
rosa_wichuraiana	Rw5G017440 Rw5G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	869
AclI	AACGTT	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	11
AcsI	RAATTY	3 cut(s)	95, 484, 669
AcuI	CTGAAG	3 cut(s)	60, 155, 458
AfaI	GTAC	3 cut(s)	339, 491, 975
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	877
AgsI	TTSAA	6 cut(s)	378, 661, 674, 749, 855, 887
AjiI	CACGTC	1 cut(s)	878
AluBI	AGCT	7 cut(s)	169, 389, 574, 599, 631, 745, 769
AluI	AGCT	7 cut(s)	169, 389, 574, 599, 631, 745, 769
AoxI	GGCC	4 cut(s)	7, 11, 130, 650
ApeKI	GCWGC	7 cut(s)	69, 389, 571, 599, 664, 766, 769
ApoI	RAATTY	3 cut(s)	95, 484, 669
AseI	ATTAAT	1 cut(s)	701
Asp700I	GAANNNNTTC	2 cut(s)	168, 834
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	323, 650
AsuHPI	GGTGA	2 cut(s)	278, 860
AvaII	GGWCC	1 cut(s)	323
BbsI	GAAGAC	2 cut(s)	353, 549
BbvI	GCAGC	7 cut(s)	81, 376, 583, 586, 676, 756, 778
BccI	CCATC	2 cut(s)	38, 334
BciVI	GTATCC	1 cut(s)	488
BfaI	CTAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	121
BfuI	GTATCC	1 cut(s)	488
BisI	GCNGC	7 cut(s)	70, 390, 572, 600, 665, 767, 770
BlsI	GCNGC	7 cut(s)	71, 391, 573, 601, 666, 768, 771
BmcAI	AGTACT	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	878
BmgT120I	GGNCC	2 cut(s)	323, 650
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	2 cut(s)	353, 549
BpuEI	CTTGAG	1 cut(s)	536
BsaJI	CCNNGG	3 cut(s)	14, 127, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	9
Bse1I	ACTGG	2 cut(s)	316, 532
Bse3DI	GCAATG	1 cut(s)	976
BseDI	CCNNGG	3 cut(s)	14, 127, 236
BseGI	GGATG	2 cut(s)	722, 936
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	1 cut(s)	976
BseNI	ACTGG	2 cut(s)	316, 532
BseRI	GAGGAG	1 cut(s)	358
BseX3I	CGGCCG	1 cut(s)	11
BseXI	GCAGC	7 cut(s)	81, 376, 583, 586, 676, 756, 778
BsgI	GTGCAG	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	4 cut(s)	9, 13, 132, 652
BsiEI	CGRYCG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	4 cut(s)	9, 13, 132, 652
Bsp1407I	TGTACA	1 cut(s)	973
Bsp143I	GATC	2 cut(s)	411, 942
BspACI	CCGC	1 cut(s)	869
BspANI	GGCC	4 cut(s)	9, 13, 132, 652
BspHI	TCATGA	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	976
BsrFI	RCCGGY	1 cut(s)	9
BsrGI	TGTACA	1 cut(s)	973
BsrI	ACTGG	2 cut(s)	316, 532
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	3 cut(s)	14, 127, 236
BssMI	GATC	2 cut(s)	411, 942
BssT1I	CCWWGG	1 cut(s)	236
Bst4CI	ACNGT	6 cut(s)	26, 128, 146, 200, 615, 657
BstAUI	TGTACA	1 cut(s)	973
BstC8I	GCNNGC	4 cut(s)	11, 122, 512, 983
BstDEI	CTNAG	1 cut(s)	950
BstDSI	CCRYGG	2 cut(s)	14, 127
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	722, 936
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	2 cut(s)	414, 945
BstMBI	GATC	2 cut(s)	411, 942
BstMCI	CGRYCG	1 cut(s)	14
BstNSI	RCATGY	2 cut(s)	52, 606
BstV1I	GCAGC	7 cut(s)	81, 376, 583, 586, 676, 756, 778
BstV2I	GAAGAC	2 cut(s)	353, 549
BstZI	CGGCCG	1 cut(s)	11
BsuI	GTATCC	1 cut(s)	488
BsuRI	GGCC	4 cut(s)	9, 13, 132, 652
BtgI	CCRYGG	2 cut(s)	14, 127
BtrI	CACGTC	1 cut(s)	878
BtsCI	GGATG	2 cut(s)	722, 936
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	4 cut(s)	11, 122, 512, 983
CciI	TCATGA	1 cut(s)	535
CfoI	GCGC	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	323, 650
Csp6I	GTAC	3 cut(s)	338, 490, 974
CviAII	CATG	5 cut(s)	49, 445, 449, 536, 603
CviQI	GTAC	3 cut(s)	338, 490, 974
DdeI	CTNAG	1 cut(s)	950
DpnI	GATC	2 cut(s)	413, 944
DpnII	GATC	2 cut(s)	411, 942
DraI	TTTAAA	2 cut(s)	112, 462
EaeI	YGGCCR	1 cut(s)	11
EagI	CGGCCG	1 cut(s)	11
EclXI	CGGCCG	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	323
Eco52I	CGGCCG	1 cut(s)	11
Eco57I	CTGAAG	3 cut(s)	60, 155, 458
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	236
EcoT22I	ATGCAT	2 cut(s)	450, 708
ErhI	CCWWGG	1 cut(s)	236
FaeI	CATG	5 cut(s)	52, 448, 452, 539, 606
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	5 cut(s)	48, 444, 448, 535, 602
FauNDI	CATATG	2 cut(s)	74, 277
Fnu4HI	GCNGC	7 cut(s)	70, 390, 572, 600, 665, 767, 770
FokI	GGATG	2 cut(s)	729, 923
FseI	GGCCGGCC	1 cut(s)	13
Fsp4HI	GCNGC	7 cut(s)	70, 390, 572, 600, 665, 767, 770
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	7 cut(s)	70, 390, 572, 600, 665, 767, 770
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	4 cut(s)	9, 13, 132, 652
HapII	CCGG	1 cut(s)	10
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	5 cut(s)	52, 448, 452, 539, 606
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	2 cut(s)	167, 743
HinfI	GANTC	3 cut(s)	557, 821, 851
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	2 cut(s)	278, 860
Hpy166II	GTNNAC	2 cut(s)	184, 283
Hpy188I	TCNGA	4 cut(s)	142, 438, 686, 820
Hpy188III	TCNNGA	8 cut(s)	101, 158, 404, 481, 536, 634, 859, 940
Hpy8I	GTNNAC	2 cut(s)	184, 283
HpyAV	CCTTC	4 cut(s)	296, 433, 866, 900
HpyCH4III	ACNGT	6 cut(s)	26, 128, 146, 200, 615, 657
HpyCH4IV	ACGT	4 cut(s)	191, 304, 877, 911
HpyF3I	CTNAG	1 cut(s)	950
HpySE526I	ACGT	4 cut(s)	191, 304, 877, 911
Hsp92II	CATG	5 cut(s)	52, 448, 452, 539, 606
HspAI	GCGC	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	9
KroNI	GCCGGC	1 cut(s)	11
Kzo9I	GATC	2 cut(s)	411, 942
Lsp1109I	GCAGC	7 cut(s)	81, 376, 583, 586, 676, 756, 778
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	4 cut(s)	191, 304, 877, 911
MaeIII	GTNAC	4 cut(s)	20, 305, 912, 958
MalI	GATC	2 cut(s)	413, 944
MboI	GATC	2 cut(s)	411, 942
MboII	GAAGA	4 cut(s)	53, 353, 392, 554
MluCI	AATT	8 cut(s)	95, 243, 378, 484, 669, 680, 831, 986
MlyI	GAGTC	1 cut(s)	566
MnlI	CCTC	8 cut(s)	154, 206, 379, 512, 532, 561, 618, 922
Mph1103I	ATGCAT	2 cut(s)	450, 708
MroNI	GCCGGC	1 cut(s)	9
MroXI	GAANNNNTTC	2 cut(s)	168, 834
MseI	TTAA	4 cut(s)	111, 461, 701, 989
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	769
MspI	CCGG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	86
NaeI	GCCGGC	1 cut(s)	11
NdeI	CATATG	2 cut(s)	74, 277
NdeII	GATC	2 cut(s)	411, 942
NgoMIV	GCCGGC	1 cut(s)	9
NlaIII	CATG	5 cut(s)	52, 448, 452, 539, 606
NmuCI	GTSAC	2 cut(s)	20, 958
NsiI	ATGCAT	2 cut(s)	450, 708
NspI	RCATGY	2 cut(s)	52, 606
PagI	TCATGA	1 cut(s)	535
PctI	GAATGC	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	11
PdmI	GAANNNNTTC	2 cut(s)	168, 834
PfeI	GAWTC	2 cut(s)	821, 851
PkrI	GCNGC	7 cut(s)	71, 391, 573, 601, 666, 768, 771
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PshBI	ATTAAT	1 cut(s)	701
Psp1406I	AACGTT	1 cut(s)	304
PspPI	GGNCC	2 cut(s)	323, 650
PsrI	GAACNNNNNNTAC	2 cut(s)	879, 911
PvuII	CAGCTG	1 cut(s)	769
RigI	GGCCGGCC	1 cut(s)	13
RsaI	GTAC	3 cut(s)	339, 491, 975
RsaNI	GTAC	3 cut(s)	338, 490, 974
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	4 cut(s)	111, 461, 701, 989
SatI	GCNGC	7 cut(s)	70, 390, 572, 600, 665, 767, 770
Sau3AI	GATC	2 cut(s)	411, 942
Sau96I	GGNCC	2 cut(s)	323, 650
ScaI	AGTACT	1 cut(s)	339
SchI	GAGTC	1 cut(s)	566
SfaNI	GCATC	1 cut(s)	214
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	8 cut(s)	95, 243, 378, 484, 669, 680, 831, 986
SsiI	CCGC	1 cut(s)	869
SspMI	CTAG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	6 cut(s)	26, 128, 146, 200, 615, 657
TaiI	ACGT	4 cut(s)	194, 307, 880, 914
TaqI	TCGA	2 cut(s)	811, 828
TasI	AATT	8 cut(s)	95, 243, 378, 484, 669, 680, 831, 986
TatI	WGTACW	3 cut(s)	337, 489, 973
TfiI	GAWTC	2 cut(s)	821, 851
Tru1I	TTAA	4 cut(s)	111, 461, 701, 989
Tru9I	TTAA	4 cut(s)	111, 461, 701, 989
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	2 cut(s)	20, 958
TseI	GCWGC	7 cut(s)	69, 389, 571, 599, 664, 766, 769
Tsp45I	GTSAC	2 cut(s)	20, 958
TspDTI	ATGAA	3 cut(s)	108, 636, 795
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	323
VspI	ATTAAT	1 cut(s)	701
XagI	CCTNNNNNAGG	1 cut(s)	59
XapI	RAATTY	3 cut(s)	95, 484, 669
XceI	RCATGY	2 cut(s)	52, 606
XmnI	GAANNNNTTC	2 cut(s)	168, 834
XspI	CTAG	1 cut(s)	333
ZrmI	AGTACT	1 cut(s)	339
Zsp2I	ATGCAT	2 cut(s)	450, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.