Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006339

Physical Location & Seq

Genomic Coordinates Reverse (-)

29546559 .. 29548866

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCGTCGGCGATTTCTCTTTCTCTCTTAAACGGAGCAACGCCTTTGAAATCGAATTCGCTCCACAAATCTAGACTCACTCCACTTCATCTTCGAACTATCTCTTGTTCTAGACTATCTTACTCTCCCTCGAGTCGCGAAATTTCTCTCAAAACTCAATCTACTGTTCCTATTTCGTGTAGGCGTAGTAGGTTTGACTTCGTTCCTCGTTGCGGCATTTCGTCGAACGATTTGCCTACTGAGAAAAAGAAGAGCTTTGGGGAGTGGGTTGAGTTTGTGGGAGAGGCGGTTTCGACGGCGTTTCCGATATGGGTTTCTCTGGGATGCTTGTTGGGACTGATGAGACCAAGTACTTTCAATTGGGTTACTCCAAATTGGACCATTGTAGGTCTTACGATCACTATGCTTGGAATGGGAATGACTTTGACCCTTGATGATCTTCGTGGCGCTTTATCGATGCCCAAGGAGCTCTTCGCTGGCTTTCTGTTGCAGTATTCGGTCATGCCACTATCAGCATTTTTTGTGAGTAAACTCTTAAATTTGCCACCACATTACGCAGCCGGTCTCATATTGGTTGGTTGCTGTCCAGGCGGCACGGCTAGTAATATTGTCACATACATCGCGCGTGGAAATGTTGCGCTATCAGTGTTGATGACAGCAGCTAGCACTGTTTCAGCTGTGATTATGACACCGCTTCTTACGGCGAAGCTTGCCAAGCAGTATATCACAGTTGATGCTCTTGGATTACTAATGTCAACACTACAGGTGGTTCTTCTCCCAGTGTTGGCTGGTGCATTTCTTAACCAATACTTTAAAAAGCTGGTGAAATTCGTCTCTCCTGTGATGCCTCCAATTGCGGTTGGAACAGTTGCAATCCTGTGTGGGTATGCTATCGGTCAGAACGCATCTGCAATACTCATGTCTGGGAAACAAGTAGTCTTGGCTTCATGCCTTCTTCACATCTCTGGATTTCTCTTTGGGTATCTGTTTTCAAGAATACTCGGAATTGATGTGGCATCATCGAGAACTATCTCTATCGAAGTTGGCATGCAGAACTCGGTGCTTGGAGTTGTTCTTGCGACACAGCATTTTGGGAATCCACTCACTGCAGTACCGTGCGCTGTTTCTAGCGTCTGTCACTCAATCCTCGGTAGCGTCTTGGCTGGAATTTGGAGACGCAGTGCCCCAAAACAGCTTGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

401

Amino Acids

42.75

Weight (kDa)

9.56

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	121 - 393	3.5e-16	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	129 - 305	4.2e-42	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78560
fragaria_vesca	FvH4_3g17590 FvH4_3g17590 FvH4_3g17590 FvH4_3g17590
malus_domestica	MD03G1250900.v1.1 MD03G1251000.v1.1 MD03G1251100.v1.1 MD03G1251200.v1.1 MD11G1271200.v1.1
prunus_persica	Prupe.4G155400_v2.0.a1
pyrus_communis	pycom03g19860 pycom11g23980 pycom11g24010 pycom11g24030
rosa_chinensis	RchiOBHm_Chr5g0029301
rosa_laevigata	RLG00000033151
rosa_multiflora	Rmu_ssc0000405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050710
rosa_rugosa	Rorug05G0112900
rosa_samantha	Rh2BG192800 Rh5AG205100 Rh5AG205200 Rh5BG203700 Rh5CG225100 Rh5DG207300
rosa_wichuraiana	Rw5G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	138, 623, 625
AciI	CCGC	5 cut(s)	213, 287, 591, 692, 857
AcsI	RAATTY	5 cut(s)	55, 141, 538, 827, 1167
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	352, 1113
AfiI	CCNNNNNNNGG	2 cut(s)	212, 784
AgsI	TTSAA	4 cut(s)	49, 358, 993, 1199
AjnI	CCWGG	1 cut(s)	586
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	7 cut(s)	255, 469, 662, 677, 709, 820, 1195
AluI	AGCT	7 cut(s)	255, 469, 662, 677, 709, 820, 1195
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	4 cut(s)	337, 569, 838, 1168
Ama87I	CYCGRG	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	557, 659
ApoI	RAATTY	5 cut(s)	55, 141, 538, 827, 1167
AspLEI	GCGC	4 cut(s)	449, 625, 640, 1121
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	835
AsuII	TTCGAA	1 cut(s)	94
AsuNHI	GCTAGC	1 cut(s)	662
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	378
BaeGI	GKGCMC	1 cut(s)	1186
BaeI	ACNNNNGTAYC	2 cut(s)	1095, 1128
BanII	GRGCYC	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	569, 671
BceAI	ACGGC	3 cut(s)	312, 612, 717
BcgI	CGANNNNNNTGC	4 cut(s)	214, 248, 385, 419
BciT130I	CCWGG	1 cut(s)	588
BcoDI	GTCTC	4 cut(s)	337, 569, 838, 1168
BfaI	CTAG	5 cut(s)	72, 111, 600, 663, 1128
BfmI	CTRYAG	2 cut(s)	761, 1107
BfoI	RGCGCY	1 cut(s)	450
BisI	GCNGC	4 cut(s)	214, 558, 592, 660
BlsI	GCNGC	4 cut(s)	215, 559, 593, 661
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	588
Bme18I	GGWCC	1 cut(s)	378
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	588
BmrI	ACTGGG	1 cut(s)	773
BmsI	GCATC	6 cut(s)	314, 447, 724, 834, 914, 1025
BmtI	GCTAGC	1 cut(s)	666
BmuI	ACTGGG	1 cut(s)	773
Bpu14I	TTCGAA	1 cut(s)	94
Bsa29I	ATCGAT	1 cut(s)	455
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	337, 569
BsaJI	CCNNGG	2 cut(s)	462, 1147
BsaXI	ACNNNNNCTCC	4 cut(s)	273, 303, 1165, 1195
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 784
Bse118I	RCCGGY	1 cut(s)	560
Bse1I	ACTGG	1 cut(s)	779
BseBI	CCWGG	1 cut(s)	588
BseCI	ATCGAT	1 cut(s)	455
BseDI	CCNNGG	2 cut(s)	462, 1147
BseGI	GGATG	1 cut(s)	329
BseLI	CCNNNNNNNGG	2 cut(s)	212, 784
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	779
BseSI	GKGCMC	1 cut(s)	1186
BseXI	GCAGC	2 cut(s)	569, 671
Bsh1236I	CGCG	3 cut(s)	138, 623, 625
BshVI	ATCGAT	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	471
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	561
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	212, 784
BsmAI	GTCTC	4 cut(s)	337, 569, 838, 1168
BsmBI	CGTCTC	2 cut(s)	838, 1168
BsmFI	GGGAC	1 cut(s)	348
Bso31I	GGTCTC	2 cut(s)	337, 569
BsoBI	CYCGRG	1 cut(s)	130
Bsp119I	TTCGAA	1 cut(s)	94
Bsp1286I	GDGCHC	2 cut(s)	471, 1186
Bsp143I	GATC	2 cut(s)	396, 436
Bsp68I	TCGCGA	1 cut(s)	138
BspACI	CCGC	5 cut(s)	213, 287, 591, 692, 857
BspCNI	CTCAG	1 cut(s)	232
BspDI	ATCGAT	1 cut(s)	455
BspFNI	CGCG	3 cut(s)	138, 623, 625
BspMAI	CTGCAG	1 cut(s)	1111
BspOI	GCTAGC	1 cut(s)	666
BspQI	GCTCTTC	2 cut(s)	245, 476
BspT104I	TTCGAA	1 cut(s)	94
BspTNI	GGTCTC	2 cut(s)	337, 569
BsrFI	RCCGGY	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	779
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	2 cut(s)	462, 1147
BssMI	GATC	2 cut(s)	396, 436
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	5 cut(s)	166, 670, 730, 868, 1116
Bst6I	CTCTTC	2 cut(s)	245, 476
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	94
BstC8I	GCNNGC	4 cut(s)	478, 664, 711, 1049
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	329
BstFNI	CGCG	3 cut(s)	138, 623, 625
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	4 cut(s)	449, 625, 640, 1121
BstKTI	GATC	2 cut(s)	399, 439
BstMAI	GTCTC	4 cut(s)	337, 569, 838, 1168
BstMBI	GATC	2 cut(s)	396, 436
BstMWI	GCNNNNNNNGC	4 cut(s)	466, 588, 710, 715
BstNI	CCWGG	1 cut(s)	588
BstNSI	RCATGY	1 cut(s)	1051
BstSCI	CCNGG	1 cut(s)	586
BstSFI	CTRYAG	2 cut(s)	761, 1107
BstSLI	GKGCMC	1 cut(s)	1186
BstUI	CGCG	3 cut(s)	138, 623, 625
BstV1I	GCAGC	2 cut(s)	569, 671
Bsu15I	ATCGAT	1 cut(s)	455
BsuTUI	ATCGAT	1 cut(s)	455
BtgZI	GCGATG	1 cut(s)	604
BtsCI	GGATG	1 cut(s)	329
BtsI	GCAGTG	2 cut(s)	1104, 1186
BtsIMutI	CAGTG	5 cut(s)	651, 666, 786, 1104, 1186
BtuMI	TCGCGA	1 cut(s)	138
Cac8I	GCNNGC	4 cut(s)	478, 664, 711, 1049
CfoI	GCGC	4 cut(s)	449, 625, 640, 1121
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	1 cut(s)	378
ClaI	ATCGAT	1 cut(s)	455
CseI	GACGC	3 cut(s)	1120, 1144, 1185
Csp6I	GTAC	2 cut(s)	351, 1112
CviAII	CATG	4 cut(s)	502, 919, 948, 1048
CviQI	GTAC	2 cut(s)	351, 1112
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	398, 438
DpnII	GATC	2 cut(s)	396, 436
DraI	TTTAAA	1 cut(s)	814
Eam1104I	CTCTTC	2 cut(s)	245, 476
EarI	CTCTTC	2 cut(s)	245, 476
Ecl136II	GAGCTC	1 cut(s)	469
Eco130I	CCWWGG	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	471
Eco31I	GGTCTC	2 cut(s)	337, 569
Eco47I	GGWCC	1 cut(s)	378
Eco53kI	GAGCTC	1 cut(s)	469
Eco88I	CYCGRG	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	469
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	462
Esp3I	CGTCTC	2 cut(s)	838, 1168
FaeI	CATG	4 cut(s)	505, 922, 951, 1051
FalI	AAGNNNNNCTT	4 cut(s)	239, 271, 455, 487
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	4 cut(s)	501, 918, 947, 1047
Fnu4HI	GCNGC	4 cut(s)	214, 558, 592, 660
FokI	GGATG	1 cut(s)	336
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	4 cut(s)	214, 558, 592, 660
FspBI	CTAG	5 cut(s)	72, 111, 600, 663, 1128
GlaI	GCGC	4 cut(s)	448, 624, 639, 1120
GluI	GCNGC	4 cut(s)	214, 558, 592, 660
HaeII	RGCGCY	1 cut(s)	450
HapII	CCGG	1 cut(s)	561
HgaI	GACGC	3 cut(s)	1120, 1144, 1185
HhaI	GCGC	4 cut(s)	449, 625, 640, 1121
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	505, 922, 951, 1051
Hin6I	GCGC	4 cut(s)	447, 623, 638, 1119
HinP1I	GCGC	4 cut(s)	447, 623, 638, 1119
HincII	GTYRAC	1 cut(s)	756
HindII	GTYRAC	1 cut(s)	756
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	3 cut(s)	75, 133, 1096
HpaII	CCGG	1 cut(s)	561
HphI	GGTGA	1 cut(s)	835
Hpy166II	GTNNAC	2 cut(s)	530, 756
Hpy188I	TCNGA	3 cut(s)	306, 900, 1004
Hpy188III	TCNNGA	6 cut(s)	72, 111, 137, 966, 993, 1023
Hpy8I	GTNNAC	2 cut(s)	530, 756
Hpy99I	CGWCG	3 cut(s)	10, 226, 298
HpyAV	CCTTC	1 cut(s)	962
HpyCH4III	ACNGT	5 cut(s)	166, 670, 730, 868, 1116
HpyCH4V	TGCA	6 cut(s)	490, 794, 872, 911, 1051, 1109
HpyF10VI	GCNNNNNNNGC	4 cut(s)	466, 588, 710, 715
HpyF3I	CTNAG	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	505, 922, 951, 1051
HspAI	GCGC	4 cut(s)	447, 623, 638, 1119
Kzo9I	GATC	2 cut(s)	396, 436
LguI	GCTCTTC	2 cut(s)	245, 476
LmnI	GCTCC	3 cut(s)	35, 66, 466
Lsp1109I	GCAGC	2 cut(s)	569, 671
LweI	GCATC	6 cut(s)	314, 447, 724, 834, 914, 1025
MaeI	CTAG	5 cut(s)	72, 111, 600, 663, 1128
MaeIII	GTNAC	3 cut(s)	364, 610, 1136
MalI	GATC	2 cut(s)	398, 438
MboI	GATC	2 cut(s)	396, 436
MboII	GAAGA	6 cut(s)	83, 262, 431, 463, 764, 947
MfeI	CAATTG	2 cut(s)	358, 852
MhlI	GDGCHC	2 cut(s)	471, 1186
MluCI	AATT	9 cut(s)	55, 141, 358, 373, 538, 827, 852, 1005, 1167
MlyI	GAGTC	2 cut(s)	69, 142
MmeI	TCCRAC	1 cut(s)	841
MnlI	CCTC	5 cut(s)	139, 216, 277, 858, 1157
MseI	TTAA	4 cut(s)	29, 536, 801, 813
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	1 cut(s)	561
MspR9I	CCNGG	1 cut(s)	588
MunI	CAATTG	2 cut(s)	358, 852
MvaI	CCWGG	1 cut(s)	588
MvnI	CGCG	3 cut(s)	138, 623, 625
MwoI	GCNNNNNNNGC	4 cut(s)	466, 588, 710, 715
NdeII	GATC	2 cut(s)	396, 436
NheI	GCTAGC	1 cut(s)	662
NlaIII	CATG	4 cut(s)	505, 922, 951, 1051
NmuCI	GTSAC	2 cut(s)	610, 1136
NruI	TCGCGA	1 cut(s)	138
NspI	RCATGY	1 cut(s)	1051
NspV	TTCGAA	1 cut(s)	94
PaeI	GCATGC	1 cut(s)	1051
PaeR7I	CTCGAG	1 cut(s)	130
PciSI	GCTCTTC	2 cut(s)	245, 476
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	1096
PkrI	GCNGC	4 cut(s)	215, 559, 593, 661
PleI	GAGTC	2 cut(s)	69, 141
PpsI	GAGTC	2 cut(s)	69, 141
Psp124BI	GAGCTC	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	586
PspPI	GGNCC	1 cut(s)	378
PspXI	VCTCGAGB	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	1111
PvuII	CAGCTG	1 cut(s)	677
RruI	TCGCGA	1 cut(s)	138
RsaI	GTAC	2 cut(s)	352, 1113
RsaNI	GTAC	2 cut(s)	351, 1112
SacI	GAGCTC	1 cut(s)	471
SapI	GCTCTTC	2 cut(s)	245, 476
SaqAI	TTAA	4 cut(s)	29, 536, 801, 813
SatI	GCNGC	4 cut(s)	214, 558, 592, 660
Sau3AI	GATC	2 cut(s)	396, 436
Sau96I	GGNCC	1 cut(s)	378
ScaI	AGTACT	1 cut(s)	352
SchI	GAGTC	2 cut(s)	69, 142
ScrFI	CCNGG	1 cut(s)	588
SduI	GDGCHC	2 cut(s)	471, 1186
SfaNI	GCATC	6 cut(s)	314, 447, 724, 834, 914, 1025
SfcI	CTRYAG	2 cut(s)	761, 1107
Sfr274I	CTCGAG	1 cut(s)	130
SfuI	TTCGAA	1 cut(s)	94
SinI	GGWCC	1 cut(s)	378
SlaI	CTCGAG	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SphI	GCATGC	1 cut(s)	1051
Sse9I	AATT	9 cut(s)	55, 141, 358, 373, 538, 827, 852, 1005, 1167
SsiI	CCGC	5 cut(s)	213, 287, 591, 692, 857
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	5 cut(s)	72, 111, 600, 663, 1128
SstI	GAGCTC	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	586
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	5 cut(s)	166, 670, 730, 868, 1116
TaqI	TCGA	8 cut(s)	53, 94, 131, 224, 293, 455, 1022, 1038
TaqII	GACCGA	2 cut(s)	487, 884
TasI	AATT	9 cut(s)	55, 141, 358, 373, 538, 827, 852, 1005, 1167
TatI	WGTACW	1 cut(s)	350
TauI	GCSGC	2 cut(s)	216, 594
TfiI	GAWTC	1 cut(s)	1096
Tru1I	TTAA	4 cut(s)	29, 536, 801, 813
Tru9I	TTAA	4 cut(s)	29, 536, 801, 813
TscAI	CASTG	5 cut(s)	651, 673, 786, 1111, 1186
TseFI	GTSAC	2 cut(s)	610, 1136
TseI	GCWGC	2 cut(s)	557, 659
Tsp45I	GTSAC	2 cut(s)	610, 1136
TspDTI	ATGAA	2 cut(s)	77, 936
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	5 cut(s)	651, 673, 786, 1111, 1186
VpaK11BI	GGWCC	1 cut(s)	378
XapI	RAATTY	5 cut(s)	55, 141, 538, 827, 1167
XbaI	TCTAGA	2 cut(s)	71, 110
XceI	RCATGY	1 cut(s)	1051
XhoI	CTCGAG	1 cut(s)	130
XspI	CTAG	5 cut(s)	72, 111, 600, 663, 1128
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.