Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006339

Physical Location & Seq

Genomic Coordinates Forward (+)

33899301 .. 33899735

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1251000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 129 bp

ATGCCGTTATCAGGATATTTTGTGAGCAAGCTCCTGAATTTGCCATCGTATTATGCAGCTAGTTTGATATTGGTTGGTAGCTGCCCTGGTGGAACAGCAAGTAACATTGTAACTTATATTGCGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

43

Amino Acids

4.41

Weight (kDa)

9.03

Isoelectric Point (pI)

56.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF	PF01758	1 - 41	1.6e-08	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78560
fragaria_vesca	FvH4_3g17590 FvH4_3g17590 FvH4_3g17590 FvH4_3g17590
malus_domestica	MD03G1250900.v1.1 MD03G1251000.v1.1 MD03G1251100.v1.1 MD03G1251200.v1.1 MD11G1271200.v1.1
prunus_persica	Prupe.4G155400_v2.0.a1
pyrus_communis	pycom03g19860 pycom11g23980 pycom11g24010 pycom11g24030
rosa_chinensis	RchiOBHm_Chr5g0029301
rosa_laevigata	RLG00000033151
rosa_multiflora	Rmu_ssc0000405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050710
rosa_rugosa	Rorug05G0112900
rosa_samantha	Rh2BG192800 Rh5AG205100 Rh5AG205200 Rh5BG203700 Rh5CG225100 Rh5DG207300
rosa_wichuraiana	Rw5G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	124
AciI	CCGC	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	3 cut(s)	31, 59, 81
AluI	AGCT	3 cut(s)	31, 59, 81
ApeKI	GCWGC	2 cut(s)	56, 81
ApoI	RAATTY	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	68, 68
BccI	CCATC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	87
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	2 cut(s)	57, 82
BlsI	GCNGC	2 cut(s)	58, 83
Bme1390I	CCNGG	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	68, 68
Bsh1236I	CGCG	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	11
BspACI	CCGC	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	29
BstFNI	CGCG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	124
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	68, 68
Cac8I	GCNNGC	1 cut(s)	29
CfoI	GCGC	1 cut(s)	124
CviJI	RGCY	3 cut(s)	31, 59, 81
CviKI_1	RGCY	3 cut(s)	31, 59, 81
EcoRII	CCWGG	1 cut(s)	85
FaiI	YATR	2 cut(s)	54, 117
Fnu4HI	GCNGC	2 cut(s)	57, 82
Fsp4HI	GCNGC	2 cut(s)	57, 82
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	2 cut(s)	57, 82
HhaI	GCGC	1 cut(s)	124
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
Hpy188III	TCNNGA	2 cut(s)	12, 34
HpyCH4V	TGCA	1 cut(s)	56
HspAI	GCGC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	36
LpnPI	CCDG	3 cut(s)	47, 72, 99
Lsp1109I	GCAGC	2 cut(s)	68, 68
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	101, 109
MluCI	AATT	1 cut(s)	37
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	58, 83
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
SatI	GCNGC	2 cut(s)	57, 82
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	3 cut(s)	33, 61, 83
SgeI	CNNG	7 cut(s)	24, 40, 46, 72, 98, 99, 111
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	85
TasI	AATT	1 cut(s)	37
TseI	GCWGC	2 cut(s)	56, 81
XapI	RAATTY	1 cut(s)	37
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.