Rroxscaffold_1G00050710

sodium metabolite cotransporter BASS1

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
71226443 .. 71232568
6126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00050710.1

Sequence Viewer

Length: 1263 bp
ATGCAGTTGACAGCACTTTCATACTCCCATGGCAACACAGCCTTCAGATTCCAAGTAAACCCAAACCCCATTTCGAACCAATCACCACTCAGAGCTACTAAACTCCCATCCAAACCAGCACCTTCCTCCTCTATTCAACTTACACTAAGATCCCACTCTCACCCACAATCACCGTCTCTCCAAAACCCCAAATGGCCCCTACCCTCAACTCCCTTTTCCTCCGTCGCAGCCACCACAAAGAAGCCGCAGTCATCAGTGGCTCCAGTTCGTTCAGGCATTTCTTCGAACAACTTCAGTGCCAATGGCAAAAGGAGCCTCAGGGACTGGGTTGAAGCGGTGAGTGAGGCTGTCTCCAATGCATTTCCGATATGGGTTGCTTTGGGGTGCCTCTTGGGCCTCATCAGTCCCGGTTCCTTCAACTGGGTCACACCCAAGCTCAATTTTTTCGGCTTAACGCTCACTATGCTTGGAATGGGTATGACCCTCACTTTCAATGACCTCAGGGACGCTTTGGCTATGCCCAAGGAGTTGTTCTCTGGCTTCTTTCTTCAGTACTCGGTGATGCCTTTATCAGGATATTTTGTGAGCAAGCTTTTGAATCTGCCATCGCATTATGCAGCTGGTTTGATATTGGTTGGGTGCTGCCCGGGTGGAACAGCAAGTAACATTGTCACTTATATTGCACGTGGAAATGTGGCACTTTCAGTGTTAATGACAGCAGCGAGCACTGTATCAGCCGTGATCATGACCCCTTTTCTCACGGCCAAACTTGCTGGTCAATATGTTGCAGTAGATGCACCTGGAATGTTATTCTCAACACTGCAGGTTGTGCTTCTTCCTGTGATGGCCGGTGCATTTCTGAATCAGTACTTCCAAGGTCTGGTTAAATTTGTCTCCCCCTTGATGCCACCCATTGCTGTGACAACAGTAGGTGTTCTTTGTGGGAACGCAATTGCCCAAAGTTCCTCTGCAATCCTTAAGTCTGGTCTACAAGTTGTGCTAGCTTCCTCCCTTCTGCATGCATCTGGATTTTTCTTTGGTTACGTGCTTTCAAGGTTACTTGGGCTTGATGTGGCATCATCAAGGACTATCTCAATTGAGGTTGGCATGCAGAATTCGGTGCTTGGAGTTGTTCTAGCTACTCAGCACTTTGGAAATCCTCTTACTGCAGTACCATGCGCTGTTTCCAGCGTTTGCCATTCAATCATCGGTAGTGCCTTGGCAGGAATATGGAGACGGAGCGTGCCGAAAAAGGAAGAATGA

Protein Analysis

420

Amino Acids

44.32

Weight (kDa)

9.82

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBF_like PF13593 146 - 412 2.8e-15 SBF-like CPA transporter family (DUF4137)
SBF PF01758 149 - 325 4e-40 Sodium Bile acid symporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 814
AccB1I GGYRCC 1 cut(s) 384
AccB7I CCANNNNNTGG 1 cut(s) 880
AccI GTMKAC 1 cut(s) 988
AciI CCGC 2 cut(s) 245, 335
AclWI GGATC 1 cut(s) 144
AcoI YGGCCR 2 cut(s) 762, 846
AcsI RAATTY 2 cut(s) 887, 1114
AcuI CTGAAG 3 cut(s) 28, 277, 533
AcvI CACGTG 1 cut(s) 686
AfaI GTAC 3 cut(s) 554, 869, 1173
AfiI CCNNNNNNNGG 3 cut(s) 420, 572, 880
AflII CTTAAG 1 cut(s) 977
AgsI TTSAA 7 cut(s) 137, 332, 418, 493, 598, 1053, 1203
AjnI CCWGG 1 cut(s) 799
AjuI GAANNNNNNNTTGG 4 cut(s) 55, 87, 515, 547
AluBI AGCT 6 cut(s) 95, 436, 592, 620, 1004, 1139
AluI AGCT 6 cut(s) 95, 436, 592, 620, 1004, 1139
Alw21I GWGCWC 1 cut(s) 728
Alw26I GTCTC 4 cut(s) 180, 355, 898, 1228
AlwI GGATC 1 cut(s) 144
AlwNI CAGNNNCTG 1 cut(s) 324
Ama87I CYCGRG 1 cut(s) 646
AoxI GGCC 4 cut(s) 194, 394, 762, 846
ApeKI GCWGC 4 cut(s) 227, 617, 642, 719
ApoI RAATTY 2 cut(s) 887, 1114
Asp700I GAANNNNTTC 1 cut(s) 290
AspLEI GCGC 1 cut(s) 1181
AspS9I GGNCC 2 cut(s) 195, 394
AsuC2I CCSGG 3 cut(s) 408, 647, 648
AsuHPI GGTGA 5 cut(s) 75, 152, 162, 349, 571
AsuII TTCGAA 2 cut(s) 74, 284
AsuNHI GCTAGC 1 cut(s) 1000
AvaI CYCGRG 1 cut(s) 646
AxyI CCTNAGG 2 cut(s) 317, 500
BaeI ACNNNNGTAYC 2 cut(s) 1155, 1188
BanI GGYRCC 1 cut(s) 384
BbrPI CACGTG 1 cut(s) 686
Bbv12I GWGCWC 1 cut(s) 728
BbvI GCAGC 4 cut(s) 239, 629, 629, 731
BccI CCATC 3 cut(s) 115, 613, 838
BceAI ACGGC 2 cut(s) 722, 777
BciT130I CCWGG 1 cut(s) 801
BclI TGATCA 1 cut(s) 741
BcnI CCSGG 3 cut(s) 408, 647, 648
BcoDI GTCTC 4 cut(s) 180, 355, 898, 1228
BfaI CTAG 2 cut(s) 1001, 1136
BfmI CTRYAG 2 cut(s) 821, 1167
BfrI CTTAAG 1 cut(s) 977
BfuAI ACCTGC 1 cut(s) 814
BglI GCCNNNNNGGC 1 cut(s) 393
BisI GCNGC 5 cut(s) 228, 245, 618, 643, 720
BlsI GCNGC 5 cut(s) 229, 246, 619, 644, 721
BmcAI AGTACT 2 cut(s) 554, 869
Bme1390I CCNGG 4 cut(s) 408, 647, 648, 801
BmeT110I CYCGRG 1 cut(s) 646
BmgT120I GGNCC 2 cut(s) 195, 394
BmiI GGNNCC 5 cut(s) 197, 261, 314, 386, 412
BmrFI CCNGG 4 cut(s) 408, 647, 648, 801
BmrI ACTGGG 2 cut(s) 334, 430
BmsI GCATC 5 cut(s) 552, 784, 894, 1031, 1085
BmtI GCTAGC 1 cut(s) 1004
BmuI ACTGGG 2 cut(s) 334, 430
BplI GAGNNNNNCTC 4 cut(s) 335, 367, 518, 550
BpmI CTGGAG 1 cut(s) 246
Bpu14I TTCGAA 2 cut(s) 74, 284
BpuMI CCSGG 3 cut(s) 408, 647, 648
BsaAI YACGTR 2 cut(s) 686, 1045
BsaJI CCNNGG 5 cut(s) 28, 522, 646, 874, 1218
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 3 cut(s) 420, 572, 880
Bse118I RCCGGY 1 cut(s) 848
Bse1I ACTGG 3 cut(s) 263, 329, 425
Bse21I CCTNAGG 2 cut(s) 317, 500
Bse3DI GCAATG 1 cut(s) 912
BseBI CCWGG 1 cut(s) 801
BseDI CCNNGG 5 cut(s) 28, 522, 646, 874, 1218
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 3 cut(s) 420, 572, 880
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 4 cut(s) 103, 331, 514, 1157
BseNI ACTGG 3 cut(s) 263, 329, 425
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 4 cut(s) 239, 629, 629, 731
BshFI GGCC 4 cut(s) 196, 396, 764, 848
BshNI GGYRCC 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 728
BsiHKCI CYCGRG 1 cut(s) 646
BsiSI CCGG 3 cut(s) 408, 647, 849
BslFI GGGAC 3 cut(s) 335, 390, 518
BslI CCNNNNNNNGG 3 cut(s) 420, 572, 880
BsmAI GTCTC 4 cut(s) 180, 355, 898, 1228
BsmBI CGTCTC 2 cut(s) 180, 1228
BsmFI GGGAC 3 cut(s) 335, 390, 518
BsnI GGCC 4 cut(s) 196, 396, 764, 848
BsoBI CYCGRG 1 cut(s) 646
Bsp119I TTCGAA 2 cut(s) 74, 284
Bsp1286I GDGCHC 1 cut(s) 728
Bsp143I GATC 2 cut(s) 149, 741
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 2 cut(s) 245, 335
BspANI GGCC 4 cut(s) 196, 396, 764, 848
BspCNI CTCAG 4 cut(s) 102, 330, 513, 1156
BspHI TCATGA 1 cut(s) 744
BspLI GGNNCC 5 cut(s) 197, 261, 314, 386, 412
BspMAI CTGCAG 2 cut(s) 825, 1171
BspMI ACCTGC 1 cut(s) 814
BspOI GCTAGC 1 cut(s) 1004
BspPI GGATC 1 cut(s) 144
BspT104I TTCGAA 2 cut(s) 74, 284
BspT107I GGYRCC 1 cut(s) 384
BspTI CTTAAG 1 cut(s) 977
BsrDI GCAATG 1 cut(s) 912
BsrFI RCCGGY 1 cut(s) 848
BsrI ACTGG 3 cut(s) 263, 329, 425
BssAI RCCGGY 1 cut(s) 848
BssECI CCNNGG 5 cut(s) 28, 522, 646, 874, 1218
BssMI GATC 2 cut(s) 149, 741
BssT1I CCWWGG 4 cut(s) 28, 522, 874, 1218
Bst2UI CCWGG 1 cut(s) 801
Bst4CI ACNGT 3 cut(s) 174, 730, 928
BstAFI CTTAAG 1 cut(s) 977
BstAPI GCANNNNNTGC 2 cut(s) 794, 829
BstBAI YACGTR 2 cut(s) 686, 1045
BstBI TTCGAA 2 cut(s) 74, 284
BstC8I GCNNGC 6 cut(s) 590, 724, 1002, 1020, 1109, 1244
BstDEI CTNAG 5 cut(s) 89, 146, 317, 500, 1143
BstDSI CCRYGG 1 cut(s) 28
BstENI CCTNNNNNAGG 1 cut(s) 570
BstF5I GGATG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 1181
BstKTI GATC 2 cut(s) 152, 744
BstMAI GTCTC 4 cut(s) 180, 355, 898, 1228
BstMBI GATC 2 cut(s) 149, 741
BstMWI GCNNNNNNNGC 6 cut(s) 312, 393, 463, 770, 794, 829
BstNI CCWGG 1 cut(s) 801
BstNSI RCATGY 2 cut(s) 1022, 1111
BstSCI CCNGG 4 cut(s) 406, 645, 646, 799
BstSFI CTRYAG 2 cut(s) 821, 1167
BstV1I GCAGC 4 cut(s) 239, 629, 629, 731
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
Bsu36I CCTNAGG 2 cut(s) 317, 500
BsuRI GGCC 4 cut(s) 196, 396, 764, 848
BtgI CCRYGG 1 cut(s) 28
BtgZI GCGATG 1 cut(s) 591
BtsCI GGATG 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 818
BtsIMutI CAGTG 5 cut(s) 261, 301, 711, 726, 818
BveI ACCTGC 1 cut(s) 814
Cac8I GCNNGC 6 cut(s) 590, 724, 1002, 1020, 1109, 1244
CaiI CAGNNNCTG 1 cut(s) 324
CciI TCATGA 1 cut(s) 744
CfoI GCGC 1 cut(s) 1181
Cfr10I RCCGGY 1 cut(s) 848
Cfr13I GGNCC 2 cut(s) 195, 394
Cfr9I CCCGGG 1 cut(s) 646
CseI GACGC 1 cut(s) 515
Csp6I GTAC 3 cut(s) 553, 868, 1172
CviAII CATG 5 cut(s) 29, 745, 1019, 1108, 1176
CviQI GTAC 3 cut(s) 553, 868, 1172
DdeI CTNAG 5 cut(s) 89, 146, 317, 500, 1143
DpnI GATC 2 cut(s) 151, 743
DpnII GATC 2 cut(s) 149, 741
EaeI YGGCCR 2 cut(s) 762, 846
Eco130I CCWWGG 4 cut(s) 28, 522, 874, 1218
Eco57I CTGAAG 3 cut(s) 28, 277, 533
Eco72I CACGTG 1 cut(s) 686
Eco81I CCTNAGG 2 cut(s) 317, 500
Eco88I CYCGRG 1 cut(s) 646
EcoNI CCTNNNNNAGG 1 cut(s) 570
EcoRI GAATTC 1 cut(s) 1114
EcoRII CCWGG 1 cut(s) 799
EcoT14I CCWWGG 4 cut(s) 28, 522, 874, 1218
EcoT22I ATGCAT 2 cut(s) 361, 1024
ErhI CCWWGG 4 cut(s) 28, 522, 874, 1218
Esp3I CGTCTC 2 cut(s) 180, 1228
FaeI CATG 5 cut(s) 32, 748, 1022, 1111, 1179
FaqI GGGAC 3 cut(s) 335, 390, 518
FatI CATG 5 cut(s) 28, 744, 1018, 1107, 1175
FbaI TGATCA 1 cut(s) 741
FblI GTMKAC 1 cut(s) 988
Fnu4HI GCNGC 5 cut(s) 228, 245, 618, 643, 720
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 5 cut(s) 228, 245, 618, 643, 720
FspBI CTAG 2 cut(s) 1001, 1136
GlaI GCGC 1 cut(s) 1180
GluI GCNGC 5 cut(s) 228, 245, 618, 643, 720
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 4 cut(s) 196, 396, 764, 848
HapII CCGG 3 cut(s) 408, 647, 849
HgaI GACGC 1 cut(s) 515
HhaI GCGC 1 cut(s) 1181
Hin1II CATG 5 cut(s) 32, 748, 1022, 1111, 1179
Hin6I GCGC 1 cut(s) 1179
HinP1I GCGC 1 cut(s) 1179
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 3 cut(s) 48, 598, 862
HpaII CCGG 3 cut(s) 408, 647, 849
HphI GGTGA 5 cut(s) 75, 152, 162, 349, 571
Hpy166II GTNNAC 3 cut(s) 9, 58, 989
Hpy188I TCNGA 4 cut(s) 47, 92, 366, 861
Hpy188III TCNNGA 3 cut(s) 573, 745, 1026
Hpy8I GTNNAC 3 cut(s) 9, 58, 989
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 4 cut(s) 52, 132, 424, 1022
HpyCH4III ACNGT 3 cut(s) 174, 730, 928
HpyCH4IV ACGT 2 cut(s) 685, 1044
HpyF10VI GCNNNNNNNGC 6 cut(s) 312, 393, 463, 770, 794, 829
HpyF3I CTNAG 5 cut(s) 89, 146, 317, 500, 1143
HpySE526I ACGT 2 cut(s) 685, 1044
Hsp92II CATG 5 cut(s) 32, 748, 1022, 1111, 1179
HspAI GCGC 1 cut(s) 1179
Ksp22I TGATCA 1 cut(s) 741
Kzo9I GATC 2 cut(s) 149, 741
LmnI GCTCC 3 cut(s) 265, 312, 1239
Lsp1109I GCAGC 4 cut(s) 239, 629, 629, 731
LweI GCATC 5 cut(s) 552, 784, 894, 1031, 1085
MaeI CTAG 2 cut(s) 1001, 1136
MaeII ACGT 2 cut(s) 685, 1044
MaeIII GTNAC 6 cut(s) 424, 662, 670, 919, 1040, 1056
MalI GATC 2 cut(s) 151, 743
MboI GATC 2 cut(s) 149, 741
MboII GAAGA 3 cut(s) 273, 539, 827
MfeI CAATTG 2 cut(s) 951, 1095
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 728
MluCI AATT 5 cut(s) 439, 887, 951, 1095, 1114
Mph1103I ATGCAT 2 cut(s) 361, 1024
MroXI GAANNNNTTC 1 cut(s) 290
MseI TTAA 4 cut(s) 452, 710, 885, 978
MslI CAYNNNNRTG 1 cut(s) 917
MspA1I CMGCKG 1 cut(s) 620
MspCI CTTAAG 1 cut(s) 977
MspI CCGG 3 cut(s) 408, 647, 849
MspR9I CCNGG 4 cut(s) 408, 647, 648, 801
MunI CAATTG 2 cut(s) 951, 1095
MvaI CCWGG 1 cut(s) 801
MwoI GCNNNNNNNGC 6 cut(s) 312, 393, 463, 770, 794, 829
NciI CCSGG 3 cut(s) 408, 647, 648
NcoI CCATGG 1 cut(s) 28
NdeII GATC 2 cut(s) 149, 741
NheI GCTAGC 1 cut(s) 1000
NlaIII CATG 5 cut(s) 32, 748, 1022, 1111, 1179
NlaIV GGNNCC 5 cut(s) 197, 261, 314, 386, 412
NmuCI GTSAC 3 cut(s) 424, 670, 919
NsiI ATGCAT 2 cut(s) 361, 1024
NspI RCATGY 2 cut(s) 1022, 1111
NspV TTCGAA 2 cut(s) 74, 284
PaeI GCATGC 2 cut(s) 1022, 1111
PagI TCATGA 1 cut(s) 744
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 3 cut(s) 48, 598, 862
PflMI CCANNNNNTGG 1 cut(s) 880
PkrI GCNGC 5 cut(s) 229, 246, 619, 644, 721
PmaCI CACGTG 1 cut(s) 686
PmlI CACGTG 1 cut(s) 686
Ppu21I YACGTR 2 cut(s) 686, 1045
Psp6I CCWGG 1 cut(s) 799
PspCI CACGTG 1 cut(s) 686
PspGI CCWGG 1 cut(s) 799
PspN4I GGNNCC 5 cut(s) 197, 261, 314, 386, 412
PspPI GGNCC 2 cut(s) 195, 394
PstI CTGCAG 2 cut(s) 825, 1171
PstNI CAGNNNCTG 1 cut(s) 324
PsuI RGATCY 1 cut(s) 149
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 3 cut(s) 554, 869, 1173
RsaNI GTAC 3 cut(s) 553, 868, 1172
RseI CAYNNNNRTG 1 cut(s) 917
SaqAI TTAA 4 cut(s) 452, 710, 885, 978
SatI GCNGC 5 cut(s) 228, 245, 618, 643, 720
Sau3AI GATC 2 cut(s) 149, 741
Sau96I GGNCC 2 cut(s) 195, 394
ScaI AGTACT 2 cut(s) 554, 869
ScrFI CCNGG 4 cut(s) 408, 647, 648, 801
SduI GDGCHC 1 cut(s) 728
SfaNI GCATC 5 cut(s) 552, 784, 894, 1031, 1085
SfcI CTRYAG 2 cut(s) 821, 1167
SfuI TTCGAA 2 cut(s) 74, 284
SmaI CCCGGG 1 cut(s) 648
SmiMI CAYNNNNRTG 1 cut(s) 917
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
SphI GCATGC 2 cut(s) 1022, 1111
Sse9I AATT 5 cut(s) 439, 887, 951, 1095, 1114
SsiI CCGC 2 cut(s) 245, 335
SspMI CTAG 2 cut(s) 1001, 1136
StyD4I CCNGG 4 cut(s) 406, 645, 646, 799
StyI CCWWGG 4 cut(s) 28, 522, 874, 1218
TaaI ACNGT 3 cut(s) 174, 730, 928
TaiI ACGT 2 cut(s) 688, 1047
TaqI TCGA 2 cut(s) 74, 284
TasI AATT 5 cut(s) 439, 887, 951, 1095, 1114
TatI WGTACW 2 cut(s) 552, 867
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 3 cut(s) 48, 598, 862
Tru1I TTAA 4 cut(s) 452, 710, 885, 978
Tru9I TTAA 4 cut(s) 452, 710, 885, 978
TscAI CASTG 5 cut(s) 261, 301, 711, 733, 825
TseFI GTSAC 3 cut(s) 424, 670, 919
TseI GCWGC 4 cut(s) 227, 617, 642, 719
Tsp45I GTSAC 3 cut(s) 424, 670, 919
TspDTI ATGAA 1 cut(s) 9
TspGWI ACGGA 2 cut(s) 211, 1252
TspMI CCCGGG 1 cut(s) 646
TspRI CASTG 5 cut(s) 261, 301, 711, 733, 825
Van91I CCANNNNNTGG 1 cut(s) 880
Vha464I CTTAAG 1 cut(s) 977
XagI CCTNNNNNAGG 1 cut(s) 570
XapI RAATTY 2 cut(s) 887, 1114
XceI RCATGY 2 cut(s) 1022, 1111
XmaI CCCGGG 1 cut(s) 646
XmiI GTMKAC 1 cut(s) 988
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 2 cut(s) 1001, 1136
ZrmI AGTACT 2 cut(s) 554, 869
Zsp2I ATGCAT 2 cut(s) 361, 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.