Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006339

Physical Location & Seq

Genomic Coordinates Forward (+)

33898640 .. 33899187

Gene Structure 548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1250900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAATTACAGGCTTCAAATTCCAACCAAACCCCATTTCACTCCTATTTTCATACCATACCAACACATCTCATTCCTCCTCTTCTTCCATTCAACTCACAGCCGCACTTTCCCAGCAAACCCAAACGGCATCTACCCTCGAATCCCTTTCCACCCATACCAACTGCCAAGAACGCACGACTACCACTAGCTCCGCTTCACTGTGGCATTTCGTCGAACAGCTCCAATGCAAATGTTACCAGAAGTTTCAGGGATTGGGTTGAACTGGTTGGCGAGTCTGTGTCGACTGCGTTTCCGATATGGGTTGCTTTGGGCTGCCTGTTGGGGCTCGTCAAACCGAGTTCCTTCATTTGGGTCACACCCAACTGTACCATCTTAGGCATAACACTGACCATGCTCGGCATGGGCATGACCCTCACTTTTGACGACCTTCGTGGCTGTCTATGCCCAAGGAGTTGCTTGCCGGCTTTTTTCTTCAGTACTCGGTTTGCAGCTCCACATTTCATATGTATACTATGCTTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

176

Amino Acids

19.34

Weight (kDa)

8.91

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78560
fragaria_vesca	FvH4_3g17590 FvH4_3g17590 FvH4_3g17590 FvH4_3g17590
malus_domestica	MD03G1250900.v1.1 MD03G1251000.v1.1 MD03G1251100.v1.1 MD03G1251200.v1.1 MD11G1271200.v1.1
prunus_persica	Prupe.4G155400_v2.0.a1
pyrus_communis	pycom03g19860 pycom11g23980 pycom11g24010 pycom11g24030
rosa_chinensis	RchiOBHm_Chr5g0029301
rosa_laevigata	RLG00000033151
rosa_multiflora	Rmu_ssc0000405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050710
rosa_rugosa	Rorug05G0112900
rosa_samantha	Rh2BG192800 Rh5AG205100 Rh5AG205200 Rh5BG203700 Rh5CG225100 Rh5DG207300
rosa_wichuraiana	Rw5G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	284, 511
AciI	CCGC	2 cut(s)	104, 194
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	460
AfaI	GTAC	2 cut(s)	370, 481
AfiI	CCNNNNNNNGG	1 cut(s)	351
AgsI	TTSAA	3 cut(s)	18, 94, 263
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AluBI	AGCT	3 cut(s)	191, 222, 494
AluI	AGCT	3 cut(s)	191, 222, 494
ApeKI	GCWGC	2 cut(s)	315, 491
ApoI	RAATTY	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	302, 503
BccI	CCATC	1 cut(s)	380
BceAI	ACGGC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	188
BisI	GCNGC	3 cut(s)	104, 316, 492
BlsI	GCNGC	3 cut(s)	105, 317, 493
BmcAI	AGTACT	1 cut(s)	481
BmsI	GCATC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	449
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	302, 503
BseYI	CCCAGC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	330
BspACI	CCGC	2 cut(s)	104, 194
BsrFI	RCCGGY	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	449
BssNAI	GTATAC	1 cut(s)	512
BssT1I	CCWWGG	1 cut(s)	449
Bst1107I	GTATAC	1 cut(s)	512
Bst4CI	ACNGT	2 cut(s)	203, 368
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	461, 465
BstDEI	CTNAG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 444
BstV1I	GCAGC	2 cut(s)	302, 503
BstZ17I	GTATAC	1 cut(s)	512
BtsIMutI	CAGTG	2 cut(s)	199, 386
Cac8I	GCNNGC	2 cut(s)	461, 465
Cfr10I	RCCGGY	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	369, 480
CviAII	CATG	3 cut(s)	394, 403, 409
CviJI	RGCY	9 cut(s)	14, 103, 191, 222, 315, 328, 438, 467, 494
CviKI_1	RGCY	9 cut(s)	14, 103, 191, 222, 315, 328, 438, 467, 494
CviQI	GTAC	2 cut(s)	369, 480
DdeI	CTNAG	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	3 cut(s)	397, 406, 412
FatI	CATG	3 cut(s)	393, 402, 408
FauNDI	CATATG	1 cut(s)	506
FblI	GTMKAC	2 cut(s)	284, 511
Fnu4HI	GCNGC	3 cut(s)	104, 316, 492
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	3 cut(s)	104, 316, 492
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	3 cut(s)	104, 316, 492
GsaI	CCCAGC	1 cut(s)	117
HapII	CCGG	1 cut(s)	464
Hin1II	CATG	3 cut(s)	397, 406, 412
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	2 cut(s)	142, 275
HpaII	CCGG	1 cut(s)	464
Hpy166II	GTNNAC	2 cut(s)	285, 512
Hpy188I	TCNGA	1 cut(s)	297
Hpy8I	GTNNAC	2 cut(s)	285, 512
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	355, 440
HpyCH4III	ACNGT	2 cut(s)	203, 368
HpyCH4V	TGCA	2 cut(s)	230, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 444
HpyF3I	CTNAG	1 cut(s)	376
Hsp92II	CATG	3 cut(s)	397, 406, 412
KroI	GCCGGC	1 cut(s)	463
KroNI	GCCGGC	1 cut(s)	465
LmnI	GCTCC	3 cut(s)	196, 227, 499
LpnPI	CCDG	6 cut(s)	127, 235, 251, 253, 332, 477
Lsp1109I	GCAGC	2 cut(s)	302, 503
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	2 cut(s)	235, 355
MboII	GAAGA	3 cut(s)	74, 77, 466
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	2 cut(s)	5, 19
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	4 cut(s)	87, 90, 148, 425
MroNI	GCCGGC	1 cut(s)	463
MslI	CAYNNNNRTG	1 cut(s)	407
MspI	CCGG	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	173, 444
NaeI	GCCGGC	1 cut(s)	465
NdeI	CATATG	1 cut(s)	506
NgoMIV	GCCGGC	1 cut(s)	463
NlaIII	CATG	3 cut(s)	397, 406, 412
NmeAIII	GCCGAG	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	355
PdiI	GCCGGC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	105, 317, 493
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	113
RsaI	GTAC	2 cut(s)	370, 481
RsaNI	GTAC	2 cut(s)	369, 480
RseI	CAYNNNNRTG	1 cut(s)	407
SalI	GTCGAC	1 cut(s)	283
SatI	GCNGC	3 cut(s)	104, 316, 492
ScaI	AGTACT	1 cut(s)	481
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	4 cut(s)	193, 224, 432, 496
SfaNI	GCATC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	2 cut(s)	5, 19
SsiI	CCGC	2 cut(s)	104, 194
SspMI	CTAG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	2 cut(s)	203, 368
TaqI	TCGA	3 cut(s)	140, 215, 284
TasI	AATT	2 cut(s)	5, 19
TatI	WGTACW	1 cut(s)	479
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	142
TscAI	CASTG	2 cut(s)	206, 393
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	2 cut(s)	315, 491
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	3 cut(s)	41, 337, 493
TspRI	CASTG	2 cut(s)	206, 393
XapI	RAATTY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XmiI	GTMKAC	2 cut(s)	284, 511
XspI	CTAG	1 cut(s)	188
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.