Rh5DG207300

sodium metabolite cotransporter BASS1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
22983977 .. 22986934
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG207300.1

Sequence Viewer

Length: 1251 bp
ATGCAGTTGACAGTACTTCCATACTTCCATGGCAACAGAGCCTTCAGATTCCAAGTAAACCCAAACCCCATTTCGAACCAATCACCACTCAGAGCTACTAAACCATCACCTTCCTCCTCTATTCAACTCACACCAAGATCCCACTCTCACCCACAATCGCCGTCTCTCCAAAACCCCAAATGGCCCCTCCCCTCAACTCCCTTCTCCTCCATCGCAGCCACCACAAAGAAGCCGCAGTCATCAGTGGCCCCAGTTCGTTCAGGCATTTCGTCGAACAGCTTCAGTGCCAATGGCAAAAGGAGCTTCAGGGACTGGGTTGAAGCGGTGAGTGAGGCTGTCTCCAATGCATTTCCGATATGGGTTGCTTTGGGGTGCCTCCTGGGCCTCATCAGTCCCGGTTCCTTCAACTGGGTCACACCCAAGCTCAATTTTTTCGGCTTAACCCTCACTATGCTTGGAATGGGTATGACCCTCACTTTCAATGACCTCAGGGACGCTTTGGCTATGCCCAAGGAGTTGTTCTCTGGCTTCTTTCTTCAGTACTCGGTGATGCCTTTATTAGGATATTTTGTGAGCAAGCTTTTGAATCTGCCATCGCATTATGCAGCTGGTTTGATATTGCTTGGGTGCTGCCCGGGTGGAACAGCAAGTAACATTGTCACTTATATTGCACGTGGAAATGTGGCACTTTCAGTGTTAATGACAGCAGCGAGCACTCTATCAGCCGTGATCATGACCCCTTTTCTCACGGCCAAACTTGCTGGTCAATATGTTGCAGTAGATGCACCTGGAATGTTATTCTCAACACTGCAGGTTGTGCTTCTTCCTGTGATGGCCGGTGCATTTCTGAATCAGTACTTCCAAGGTCTGGTTAAATTTGTCTCCCCCTTGATGCCACCCATTGCTGTGACAACAGTAGGTGTTCTTTGTGGGAACGCAATTGCCCAAAGTTCCTCCGCAATCCTCAAGTCTGGTCTACAAGTTGTGCTAGCTTCCTCCCTTCTGCATGCATCTGGATTTTTCTTTGGTTACGTGCTTTCAAGGTTACTTGGGCTTGATGTGGCATCATCAAGGACTATCTCAATTGAGGTTGGCATGCAGAATTCGGTGCTTGGAATTGTCCTAGCTACTCAGCACTTTGGAAATCCTCTTACTGCAGTGCCATGCGCTGTTTCCAGCGTTTGCCAATCAATCATCGGTAGTGCCTTGGCAGGAATATGGAGGCGGAGCATGCCGAAAAAGGAAGAATGA

Protein Analysis

416

Amino Acids

44.16

Weight (kDa)

9.85

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBF_like PF13593 142 - 409 9.2e-17 SBF-like CPA transporter family (DUF4137)
SBF PF01758 145 - 321 2.2e-40 Sodium Bile acid symporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 802
AccB1I GGYRCC 1 cut(s) 372
AccB7I CCANNNNNTGG 1 cut(s) 868
AccI GTMKAC 1 cut(s) 976
AciI CCGC 4 cut(s) 233, 323, 957, 1225
AclWI GGATC 1 cut(s) 132
AcoI YGGCCR 2 cut(s) 750, 834
AcsI RAATTY 2 cut(s) 875, 1102
AcuI CTGAAG 4 cut(s) 28, 265, 289, 521
AcvI CACGTG 1 cut(s) 674
AfaI GTAC 3 cut(s) 15, 542, 857
AfiI CCNNNNNNNGG 3 cut(s) 408, 560, 868
AgsI TTSAA 6 cut(s) 125, 320, 406, 481, 586, 1041
AjnI CCWGG 2 cut(s) 378, 787
AjuI GAANNNNNNNTTGG 4 cut(s) 55, 87, 503, 535
AluBI AGCT 8 cut(s) 95, 279, 303, 424, 580, 608, 992, 1127
AluI AGCT 8 cut(s) 95, 279, 303, 424, 580, 608, 992, 1127
Alw21I GWGCWC 1 cut(s) 716
Alw26I GTCTC 3 cut(s) 168, 343, 886
AlwI GGATC 1 cut(s) 132
AlwNI CAGNNNCTG 1 cut(s) 312
Ama87I CYCGRG 1 cut(s) 634
AoxI GGCC 5 cut(s) 182, 246, 382, 750, 834
ApeKI GCWGC 4 cut(s) 215, 605, 630, 707
ApoI RAATTY 2 cut(s) 875, 1102
Asp700I GAANNNNTTC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 1169
AspS9I GGNCC 3 cut(s) 183, 247, 382
AsuC2I CCSGG 3 cut(s) 396, 635, 636
AsuHPI GGTGA 5 cut(s) 75, 99, 140, 337, 559
AsuII TTCGAA 1 cut(s) 74
AsuNHI GCTAGC 1 cut(s) 988
AvaI CYCGRG 1 cut(s) 634
AxyI CCTNAGG 1 cut(s) 488
BanI GGYRCC 1 cut(s) 372
BbrPI CACGTG 1 cut(s) 674
Bbv12I GWGCWC 1 cut(s) 716
BbvI GCAGC 4 cut(s) 227, 617, 617, 719
BccI CCATC 4 cut(s) 112, 218, 601, 826
BceAI ACGGC 3 cut(s) 145, 710, 765
BciT130I CCWGG 2 cut(s) 380, 789
BclI TGATCA 1 cut(s) 729
BcnI CCSGG 3 cut(s) 396, 635, 636
BcoDI GTCTC 3 cut(s) 168, 343, 886
BfaI CTAG 2 cut(s) 989, 1124
BfmI CTRYAG 2 cut(s) 809, 1155
BfuAI ACCTGC 1 cut(s) 802
BglI GCCNNNNNGGC 1 cut(s) 381
BisI GCNGC 5 cut(s) 216, 233, 606, 631, 708
BlsI GCNGC 5 cut(s) 217, 234, 607, 632, 709
BmcAI AGTACT 3 cut(s) 15, 542, 857
Bme1390I CCNGG 5 cut(s) 380, 396, 635, 636, 789
BmeT110I CYCGRG 1 cut(s) 634
BmgT120I GGNCC 3 cut(s) 183, 247, 382
BmiI GGNNCC 4 cut(s) 185, 249, 374, 400
BmrFI CCNGG 5 cut(s) 380, 396, 635, 636, 789
BmrI ACTGGG 3 cut(s) 245, 322, 418
BmsI GCATC 5 cut(s) 540, 772, 882, 1019, 1073
BmtI GCTAGC 1 cut(s) 992
BmuI ACTGGG 3 cut(s) 245, 322, 418
BplI GAGNNNNNCTC 4 cut(s) 323, 355, 506, 538
Bpu14I TTCGAA 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 950
BpuMI CCSGG 3 cut(s) 396, 635, 636
BsaAI YACGTR 2 cut(s) 674, 1033
BsaJI CCNNGG 6 cut(s) 28, 379, 510, 634, 862, 1206
Bsc4I CCNNNNNNNGG 3 cut(s) 408, 560, 868
Bse118I RCCGGY 1 cut(s) 836
Bse1I ACTGG 3 cut(s) 251, 317, 413
Bse21I CCTNAGG 1 cut(s) 488
Bse3DI GCAATG 1 cut(s) 900
BseBI CCWGG 2 cut(s) 380, 789
BseDI CCNNGG 6 cut(s) 28, 379, 510, 634, 862, 1206
BseLI CCNNNNNNNGG 3 cut(s) 408, 560, 868
BseMI GCAATG 1 cut(s) 900
BseMII CTCAG 3 cut(s) 103, 502, 1145
BseNI ACTGG 3 cut(s) 251, 317, 413
BseRI GAGGAG 2 cut(s) 106, 196
BseXI GCAGC 4 cut(s) 227, 617, 617, 719
BshFI GGCC 5 cut(s) 184, 248, 384, 752, 836
BshNI GGYRCC 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 716
BsiHKCI CYCGRG 1 cut(s) 634
BsiSI CCGG 3 cut(s) 396, 635, 837
BslFI GGGAC 3 cut(s) 323, 378, 506
BslI CCNNNNNNNGG 3 cut(s) 408, 560, 868
BsmAI GTCTC 3 cut(s) 168, 343, 886
BsmBI CGTCTC 1 cut(s) 168
BsmFI GGGAC 3 cut(s) 323, 378, 506
BsnI GGCC 5 cut(s) 184, 248, 384, 752, 836
BsoBI CYCGRG 1 cut(s) 634
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 716
Bsp143I GATC 2 cut(s) 137, 729
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 4 cut(s) 233, 323, 957, 1225
BspANI GGCC 5 cut(s) 184, 248, 384, 752, 836
BspCNI CTCAG 3 cut(s) 102, 501, 1144
BspHI TCATGA 1 cut(s) 732
BspLI GGNNCC 4 cut(s) 185, 249, 374, 400
BspMAI CTGCAG 2 cut(s) 813, 1159
BspMI ACCTGC 1 cut(s) 802
BspOI GCTAGC 1 cut(s) 992
BspPI GGATC 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 900
BsrFI RCCGGY 1 cut(s) 836
BsrI ACTGG 3 cut(s) 251, 317, 413
BssAI RCCGGY 1 cut(s) 836
BssECI CCNNGG 6 cut(s) 28, 379, 510, 634, 862, 1206
BssMI GATC 2 cut(s) 137, 729
BssT1I CCWWGG 4 cut(s) 28, 510, 862, 1206
Bst2UI CCWGG 2 cut(s) 380, 789
Bst4CI ACNGT 2 cut(s) 13, 916
BstAPI GCANNNNNTGC 2 cut(s) 782, 817
BstBAI YACGTR 2 cut(s) 674, 1033
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 6 cut(s) 578, 712, 990, 1008, 1097, 1232
BstDEI CTNAG 3 cut(s) 89, 488, 1131
BstDSI CCRYGG 1 cut(s) 28
BstENI CCTNNNNNAGG 1 cut(s) 558
BstHHI GCGC 1 cut(s) 1169
BstKTI GATC 2 cut(s) 140, 732
BstMAI GTCTC 3 cut(s) 168, 343, 886
BstMBI GATC 2 cut(s) 137, 729
BstMWI GCNNNNNNNGC 6 cut(s) 300, 381, 758, 782, 817, 1231
BstNI CCWGG 2 cut(s) 380, 789
BstNSI RCATGY 3 cut(s) 1010, 1099, 1234
BstSCI CCNGG 5 cut(s) 378, 394, 633, 634, 787
BstSFI CTRYAG 2 cut(s) 809, 1155
BstV1I GCAGC 4 cut(s) 227, 617, 617, 719
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
Bsu36I CCTNAGG 1 cut(s) 488
BsuRI GGCC 5 cut(s) 184, 248, 384, 752, 836
BtgI CCRYGG 1 cut(s) 28
BtgZI GCGATG 2 cut(s) 196, 579
BtsI GCAGTG 2 cut(s) 806, 1164
BtsIMutI CAGTG 5 cut(s) 249, 289, 699, 806, 1164
BveI ACCTGC 1 cut(s) 802
Cac8I GCNNGC 6 cut(s) 578, 712, 990, 1008, 1097, 1232
CaiI CAGNNNCTG 1 cut(s) 312
CciI TCATGA 1 cut(s) 732
CfoI GCGC 1 cut(s) 1169
Cfr10I RCCGGY 1 cut(s) 836
Cfr13I GGNCC 3 cut(s) 183, 247, 382
Cfr9I CCCGGG 1 cut(s) 634
CseI GACGC 1 cut(s) 503
Csp6I GTAC 3 cut(s) 14, 541, 856
CviAII CATG 6 cut(s) 29, 733, 1007, 1096, 1164, 1231
CviQI GTAC 3 cut(s) 14, 541, 856
DdeI CTNAG 3 cut(s) 89, 488, 1131
DpnI GATC 2 cut(s) 139, 731
DpnII GATC 2 cut(s) 137, 729
EaeI YGGCCR 2 cut(s) 750, 834
EciI GGCGGA 1 cut(s) 1240
Eco130I CCWWGG 4 cut(s) 28, 510, 862, 1206
Eco57I CTGAAG 4 cut(s) 28, 265, 289, 521
Eco72I CACGTG 1 cut(s) 674
Eco81I CCTNAGG 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 634
EcoNI CCTNNNNNAGG 1 cut(s) 558
EcoRI GAATTC 1 cut(s) 1102
EcoRII CCWGG 2 cut(s) 378, 787
EcoT14I CCWWGG 4 cut(s) 28, 510, 862, 1206
EcoT22I ATGCAT 2 cut(s) 349, 1012
ErhI CCWWGG 4 cut(s) 28, 510, 862, 1206
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 6 cut(s) 32, 736, 1010, 1099, 1167, 1234
FaqI GGGAC 3 cut(s) 323, 378, 506
FatI CATG 6 cut(s) 28, 732, 1006, 1095, 1163, 1230
FbaI TGATCA 1 cut(s) 729
FblI GTMKAC 1 cut(s) 976
Fnu4HI GCNGC 5 cut(s) 216, 233, 606, 631, 708
Fsp4HI GCNGC 5 cut(s) 216, 233, 606, 631, 708
FspBI CTAG 2 cut(s) 989, 1124
GlaI GCGC 1 cut(s) 1168
GluI GCNGC 5 cut(s) 216, 233, 606, 631, 708
HaeIII GGCC 5 cut(s) 184, 248, 384, 752, 836
HapII CCGG 3 cut(s) 396, 635, 837
HgaI GACGC 1 cut(s) 503
HhaI GCGC 1 cut(s) 1169
Hin1II CATG 6 cut(s) 32, 736, 1010, 1099, 1167, 1234
Hin6I GCGC 1 cut(s) 1167
HinP1I GCGC 1 cut(s) 1167
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 3 cut(s) 48, 586, 850
HpaII CCGG 3 cut(s) 396, 635, 837
HphI GGTGA 5 cut(s) 75, 99, 140, 337, 559
Hpy166II GTNNAC 3 cut(s) 9, 58, 977
Hpy188I TCNGA 4 cut(s) 47, 92, 354, 849
Hpy188III TCNNGA 2 cut(s) 733, 1014
Hpy8I GTNNAC 3 cut(s) 9, 58, 977
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 5 cut(s) 52, 120, 211, 412, 1010
HpyCH4III ACNGT 2 cut(s) 13, 916
HpyCH4IV ACGT 2 cut(s) 673, 1032
HpyF10VI GCNNNNNNNGC 6 cut(s) 300, 381, 758, 782, 817, 1231
HpyF3I CTNAG 3 cut(s) 89, 488, 1131
HpySE526I ACGT 2 cut(s) 673, 1032
Hsp92II CATG 6 cut(s) 32, 736, 1010, 1099, 1167, 1234
HspAI GCGC 1 cut(s) 1167
Ksp22I TGATCA 1 cut(s) 729
Kzo9I GATC 2 cut(s) 137, 729
LmnI GCTCC 2 cut(s) 300, 1227
Lsp1109I GCAGC 4 cut(s) 227, 617, 617, 719
LweI GCATC 5 cut(s) 540, 772, 882, 1019, 1073
MaeI CTAG 2 cut(s) 989, 1124
MaeII ACGT 2 cut(s) 673, 1032
MaeIII GTNAC 6 cut(s) 412, 650, 658, 907, 1028, 1044
MalI GATC 2 cut(s) 139, 731
MboI GATC 2 cut(s) 137, 729
MboII GAAGA 2 cut(s) 527, 815
MfeI CAATTG 2 cut(s) 939, 1083
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 716
MluCI AATT 6 cut(s) 427, 875, 939, 1083, 1102, 1116
Mph1103I ATGCAT 2 cut(s) 349, 1012
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 3 cut(s) 440, 698, 873
MslI CAYNNNNRTG 1 cut(s) 905
MspA1I CMGCKG 1 cut(s) 608
MspI CCGG 3 cut(s) 396, 635, 837
MspR9I CCNGG 5 cut(s) 380, 396, 635, 636, 789
MunI CAATTG 2 cut(s) 939, 1083
MvaI CCWGG 2 cut(s) 380, 789
MwoI GCNNNNNNNGC 6 cut(s) 300, 381, 758, 782, 817, 1231
NciI CCSGG 3 cut(s) 396, 635, 636
NcoI CCATGG 1 cut(s) 28
NdeII GATC 2 cut(s) 137, 729
NheI GCTAGC 1 cut(s) 988
NlaIII CATG 6 cut(s) 32, 736, 1010, 1099, 1167, 1234
NlaIV GGNNCC 4 cut(s) 185, 249, 374, 400
NmuCI GTSAC 3 cut(s) 412, 658, 907
NsiI ATGCAT 2 cut(s) 349, 1012
NspI RCATGY 3 cut(s) 1010, 1099, 1234
NspV TTCGAA 1 cut(s) 74
PaeI GCATGC 3 cut(s) 1010, 1099, 1234
PagI TCATGA 1 cut(s) 732
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 3 cut(s) 48, 586, 850
PflMI CCANNNNNTGG 1 cut(s) 868
PkrI GCNGC 5 cut(s) 217, 234, 607, 632, 709
PmaCI CACGTG 1 cut(s) 674
PmlI CACGTG 1 cut(s) 674
Ppu21I YACGTR 2 cut(s) 674, 1033
Psp6I CCWGG 2 cut(s) 378, 787
PspCI CACGTG 1 cut(s) 674
PspGI CCWGG 2 cut(s) 378, 787
PspN4I GGNNCC 4 cut(s) 185, 249, 374, 400
PspPI GGNCC 3 cut(s) 183, 247, 382
PstI CTGCAG 2 cut(s) 813, 1159
PstNI CAGNNNCTG 1 cut(s) 312
PsuI RGATCY 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 3 cut(s) 15, 542, 857
RsaNI GTAC 3 cut(s) 14, 541, 856
RseI CAYNNNNRTG 1 cut(s) 905
SaqAI TTAA 3 cut(s) 440, 698, 873
SatI GCNGC 5 cut(s) 216, 233, 606, 631, 708
Sau3AI GATC 2 cut(s) 137, 729
Sau96I GGNCC 3 cut(s) 183, 247, 382
ScaI AGTACT 3 cut(s) 15, 542, 857
ScrFI CCNGG 5 cut(s) 380, 396, 635, 636, 789
SduI GDGCHC 1 cut(s) 716
SfaNI GCATC 5 cut(s) 540, 772, 882, 1019, 1073
SfcI CTRYAG 2 cut(s) 809, 1155
SfuI TTCGAA 1 cut(s) 74
SmaI CCCGGG 1 cut(s) 636
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 1 cut(s) 965
SmoI CTYRAG 1 cut(s) 965
SphI GCATGC 3 cut(s) 1010, 1099, 1234
Sse9I AATT 6 cut(s) 427, 875, 939, 1083, 1102, 1116
SsiI CCGC 4 cut(s) 233, 323, 957, 1225
SspMI CTAG 2 cut(s) 989, 1124
StyD4I CCNGG 5 cut(s) 378, 394, 633, 634, 787
StyI CCWWGG 4 cut(s) 28, 510, 862, 1206
TaaI ACNGT 2 cut(s) 13, 916
TaiI ACGT 2 cut(s) 676, 1035
TaqI TCGA 2 cut(s) 74, 272
TasI AATT 6 cut(s) 427, 875, 939, 1083, 1102, 1116
TatI WGTACW 3 cut(s) 13, 540, 855
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 3 cut(s) 48, 586, 850
Tru1I TTAA 3 cut(s) 440, 698, 873
Tru9I TTAA 3 cut(s) 440, 698, 873
TscAI CASTG 5 cut(s) 249, 289, 699, 813, 1164
TseFI GTSAC 3 cut(s) 412, 658, 907
TseI GCWGC 4 cut(s) 215, 605, 630, 707
Tsp45I GTSAC 3 cut(s) 412, 658, 907
TspMI CCCGGG 1 cut(s) 634
TspRI CASTG 5 cut(s) 249, 289, 699, 813, 1164
Van91I CCANNNNNTGG 1 cut(s) 868
XagI CCTNNNNNAGG 1 cut(s) 558
XapI RAATTY 2 cut(s) 875, 1102
XceI RCATGY 3 cut(s) 1010, 1099, 1234
XmaI CCCGGG 1 cut(s) 634
XmiI GTMKAC 1 cut(s) 976
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 2 cut(s) 989, 1124
ZrmI AGTACT 3 cut(s) 15, 542, 857
Zsp2I ATGCAT 2 cut(s) 349, 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.