Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000405.1

Orthogroup ID

OG0006339

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2299

Gene Structure 2299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000405.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

tccaatgcatttccgatatgggttgctttggggtgcctcctgggcctcatcagtcccggttccttcaactgggtcacacccaagctcaattttttcggcttaacgctcactatgcttggaatgggtatgaccctcaccttcaatgacctcagggacgctttggctatgcccaaggagttgttctctggcttctttcttcagtactcggtgatgcctttatcaggatattttgtgagcaagcttttgaatctgccatcgcattatgcagctggtttgatattggttgggtgctgcccgggtggaacagcaagtaacattgtcacttatattgcacgtggaaatgtggcactttcagtgttaatgacagcagcgagcactgtatcagccgtgatcatgaccccttttctcacggccaaacttgctggtcaatatgttgcagtagatgcacctggaatgttattctcaacactgcaggttgtgcttcttcctgtgatggccggtgcatttctgaatcagtacttccaaggtctggttaaatttgtctcccccttgatgccacccattgctgtgacaacagtaggtgttctttgtgggaacgcaattgcccaaagttcctccgcaatcctcaagtctggtctacaagttgtgctagcttcctcccttctgcatgcatctggatttttctttggttacgtgctttcaaggttacttgggcttgatgtggcatcatcaaggactatctcaattgaggttggcatgcaggttagcaacatttcgctttctctcgtagagctggatttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

267

Amino Acids

28.1

Weight (kDa)

8.36

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78560
fragaria_vesca	FvH4_3g17590 FvH4_3g17590 FvH4_3g17590 FvH4_3g17590
malus_domestica	MD03G1250900.v1.1 MD03G1251000.v1.1 MD03G1251100.v1.1 MD03G1251200.v1.1 MD11G1271200.v1.1
prunus_persica	Prupe.4G155400_v2.0.a1
pyrus_communis	pycom03g19860 pycom11g23980 pycom11g24010 pycom11g24030
rosa_chinensis	RchiOBHm_Chr5g0029301
rosa_laevigata	RLG00000033151
rosa_multiflora	Rmu_ssc0000405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050710
rosa_rugosa	Rorug05G0112900
rosa_samantha	Rh2BG192800 Rh5AG205100 Rh5AG205200 Rh5BG203700 Rh5CG225100 Rh5DG207300
rosa_wichuraiana	Rw5G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	463, 751
AccB1I	GGYRCC	1 cut(s)	33
AccB7I	CCANNNNNTGG	1 cut(s)	529
AccI	GTMKAC	1 cut(s)	637
AciI	CCGC	1 cut(s)	618
AcoI	YGGCCR	2 cut(s)	411, 495
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	1 cut(s)	182
AcvI	CACGTG	1 cut(s)	335
AfaI	GTAC	2 cut(s)	203, 518
AfiI	CCNNNNNNNGG	3 cut(s)	69, 221, 529
AgsI	TTSAA	4 cut(s)	67, 142, 247, 702
AjnI	CCWGG	2 cut(s)	39, 448
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	5 cut(s)	85, 241, 269, 653, 793
AluI	AGCT	5 cut(s)	85, 241, 269, 653, 793
Alw21I	GWGCWC	1 cut(s)	377
Alw26I	GTCTC	1 cut(s)	547
Ama87I	CYCGRG	1 cut(s)	295
AoxI	GGCC	3 cut(s)	43, 411, 495
ApeKI	GCWGC	3 cut(s)	266, 291, 368
ApoI	RAATTY	1 cut(s)	536
AspS9I	GGNCC	1 cut(s)	43
AsuC2I	CCSGG	3 cut(s)	57, 296, 297
AsuHPI	GGTGA	2 cut(s)	127, 220
AsuNHI	GCTAGC	1 cut(s)	649
AvaI	CYCGRG	1 cut(s)	295
AxyI	CCTNAGG	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	33
BbrPI	CACGTG	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	3 cut(s)	278, 278, 380
BccI	CCATC	2 cut(s)	262, 487
BceAI	ACGGC	2 cut(s)	371, 426
BciT130I	CCWGG	2 cut(s)	41, 450
BclI	TGATCA	1 cut(s)	390
BcnI	CCSGG	3 cut(s)	57, 296, 297
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	1 cut(s)	470
BfuAI	ACCTGC	2 cut(s)	463, 751
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	3 cut(s)	267, 292, 369
BlsI	GCNGC	3 cut(s)	268, 293, 370
BmcAI	AGTACT	2 cut(s)	203, 518
Bme1390I	CCNGG	5 cut(s)	41, 57, 296, 297, 450
BmeT110I	CYCGRG	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	35, 61
BmrFI	CCNGG	5 cut(s)	41, 57, 296, 297, 450
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	5 cut(s)	201, 433, 543, 680, 734
BmtI	GCTAGC	1 cut(s)	653
BmuI	ACTGGG	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpuEI	CTTGAG	1 cut(s)	611
BpuMI	CCSGG	3 cut(s)	57, 296, 297
BsaAI	YACGTR	2 cut(s)	335, 694
BsaJI	CCNNGG	4 cut(s)	40, 171, 295, 523
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 221, 529
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	1 cut(s)	74
Bse21I	CCTNAGG	1 cut(s)	149
Bse3DI	GCAATG	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	41, 450
BseDI	CCNNGG	4 cut(s)	40, 171, 295, 523
BseLI	CCNNNNNNNGG	3 cut(s)	69, 221, 529
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	74
BseXI	GCAGC	3 cut(s)	278, 278, 380
BshFI	GGCC	3 cut(s)	45, 413, 497
BshNI	GGYRCC	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	377
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	3 cut(s)	57, 296, 498
BslFI	GGGAC	2 cut(s)	39, 167
BslI	CCNNNNNNNGG	3 cut(s)	69, 221, 529
BsmAI	GTCTC	1 cut(s)	547
BsmFI	GGGAC	2 cut(s)	39, 167
BsnI	GGCC	3 cut(s)	45, 413, 497
BsoBI	CYCGRG	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	390
BspACI	CCGC	1 cut(s)	618
BspANI	GGCC	3 cut(s)	45, 413, 497
BspCNI	CTCAG	1 cut(s)	162
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	2 cut(s)	35, 61
BspMAI	CTGCAG	1 cut(s)	474
BspMI	ACCTGC	2 cut(s)	463, 751
BspOI	GCTAGC	1 cut(s)	653
BspT107I	GGYRCC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	561
BsrFI	RCCGGY	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	4 cut(s)	40, 171, 295, 523
BssMI	GATC	1 cut(s)	390
BssT1I	CCWWGG	2 cut(s)	171, 523
Bst2UI	CCWGG	2 cut(s)	41, 450
Bst4CI	ACNGT	2 cut(s)	379, 577
BstAPI	GCANNNNNTGC	2 cut(s)	443, 478
BstBAI	YACGTR	2 cut(s)	335, 694
BstC8I	GCNNGC	5 cut(s)	239, 373, 651, 669, 758
BstDEI	CTNAG	1 cut(s)	149
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	393
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	1 cut(s)	390
BstMWI	GCNNNNNNNGC	5 cut(s)	42, 112, 419, 443, 478
BstNI	CCWGG	2 cut(s)	41, 450
BstNSI	RCATGY	2 cut(s)	671, 760
BstSCI	CCNGG	5 cut(s)	39, 55, 294, 295, 448
BstSFI	CTRYAG	1 cut(s)	470
BstV1I	GCAGC	3 cut(s)	278, 278, 380
Bsu36I	CCTNAGG	1 cut(s)	149
BsuRI	GGCC	3 cut(s)	45, 413, 497
BtgZI	GCGATG	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	3 cut(s)	360, 375, 467
BveI	ACCTGC	2 cut(s)	463, 751
Cac8I	GCNNGC	5 cut(s)	239, 373, 651, 669, 758
CciI	TCATGA	1 cut(s)	393
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	43
Cfr9I	CCCGGG	1 cut(s)	295
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	202, 517
CviAII	CATG	3 cut(s)	394, 668, 757
CviQI	GTAC	2 cut(s)	202, 517
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	1 cut(s)	392
DpnII	GATC	1 cut(s)	390
EaeI	YGGCCR	2 cut(s)	411, 495
Eco130I	CCWWGG	2 cut(s)	171, 523
Eco57I	CTGAAG	1 cut(s)	182
Eco72I	CACGTG	1 cut(s)	335
Eco81I	CCTNAGG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	295
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	39, 448
EcoT14I	CCWWGG	2 cut(s)	171, 523
EcoT22I	ATGCAT	2 cut(s)	10, 673
ErhI	CCWWGG	2 cut(s)	171, 523
FaeI	CATG	3 cut(s)	397, 671, 760
FaqI	GGGAC	2 cut(s)	39, 167
FatI	CATG	3 cut(s)	393, 667, 756
FbaI	TGATCA	1 cut(s)	390
FblI	GTMKAC	1 cut(s)	637
Fnu4HI	GCNGC	3 cut(s)	267, 292, 369
Fsp4HI	GCNGC	3 cut(s)	267, 292, 369
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	3 cut(s)	267, 292, 369
HaeIII	GGCC	3 cut(s)	45, 413, 497
HapII	CCGG	3 cut(s)	57, 296, 498
HgaI	GACGC	1 cut(s)	164
Hin1II	CATG	3 cut(s)	397, 671, 760
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	2 cut(s)	247, 511
HpaII	CCGG	3 cut(s)	57, 296, 498
HphI	GGTGA	2 cut(s)	127, 220
Hpy166II	GTNNAC	1 cut(s)	638
Hpy188I	TCNGA	2 cut(s)	15, 510
Hpy188III	TCNNGA	3 cut(s)	222, 394, 675
Hpy8I	GTNNAC	1 cut(s)	638
HpyAV	CCTTC	3 cut(s)	73, 148, 671
HpyCH4III	ACNGT	2 cut(s)	379, 577
HpyCH4IV	ACGT	2 cut(s)	334, 693
HpyF10VI	GCNNNNNNNGC	5 cut(s)	42, 112, 419, 443, 478
HpyF3I	CTNAG	1 cut(s)	149
HpySE526I	ACGT	2 cut(s)	334, 693
Hsp92II	CATG	3 cut(s)	397, 671, 760
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	390
Lsp1109I	GCAGC	3 cut(s)	278, 278, 380
LweI	GCATC	5 cut(s)	201, 433, 543, 680, 734
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	2 cut(s)	334, 693
MaeIII	GTNAC	6 cut(s)	73, 311, 319, 568, 689, 705
MalI	GATC	1 cut(s)	392
MboI	GATC	1 cut(s)	390
MboII	GAAGA	2 cut(s)	188, 476
MfeI	CAATTG	2 cut(s)	600, 744
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	4 cut(s)	88, 536, 600, 744
MnlI	CCTC	8 cut(s)	47, 56, 143, 158, 625, 635, 667, 742
Mph1103I	ATGCAT	2 cut(s)	10, 673
MseI	TTAA	3 cut(s)	101, 359, 534
MslI	CAYNNNNRTG	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	3 cut(s)	57, 296, 498
MspR9I	CCNGG	5 cut(s)	41, 57, 296, 297, 450
MunI	CAATTG	2 cut(s)	600, 744
MvaI	CCWGG	2 cut(s)	41, 450
MwoI	GCNNNNNNNGC	5 cut(s)	42, 112, 419, 443, 478
NciI	CCSGG	3 cut(s)	57, 296, 297
NdeII	GATC	1 cut(s)	390
NheI	GCTAGC	1 cut(s)	649
NlaIII	CATG	3 cut(s)	397, 671, 760
NlaIV	GGNNCC	2 cut(s)	35, 61
NmuCI	GTSAC	3 cut(s)	73, 319, 568
NsiI	ATGCAT	2 cut(s)	10, 673
NspI	RCATGY	2 cut(s)	671, 760
PaeI	GCATGC	2 cut(s)	671, 760
PagI	TCATGA	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	247, 511
PflMI	CCANNNNNTGG	1 cut(s)	529
PkrI	GCNGC	3 cut(s)	268, 293, 370
PmaCI	CACGTG	1 cut(s)	335
PmlI	CACGTG	1 cut(s)	335
Ppu21I	YACGTR	2 cut(s)	335, 694
Psp6I	CCWGG	2 cut(s)	39, 448
PspCI	CACGTG	1 cut(s)	335
PspGI	CCWGG	2 cut(s)	39, 448
PspN4I	GGNNCC	2 cut(s)	35, 61
PspPI	GGNCC	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	474
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	203, 518
RsaNI	GTAC	2 cut(s)	202, 517
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	3 cut(s)	101, 359, 534
SatI	GCNGC	3 cut(s)	267, 292, 369
Sau3AI	GATC	1 cut(s)	390
Sau96I	GGNCC	1 cut(s)	43
ScaI	AGTACT	2 cut(s)	203, 518
ScrFI	CCNGG	5 cut(s)	41, 57, 296, 297, 450
SduI	GDGCHC	1 cut(s)	377
SfaNI	GCATC	5 cut(s)	201, 433, 543, 680, 734
SfcI	CTRYAG	1 cut(s)	470
SmaI	CCCGGG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
SphI	GCATGC	2 cut(s)	671, 760
Sse9I	AATT	4 cut(s)	88, 536, 600, 744
SsiI	CCGC	1 cut(s)	618
SspMI	CTAG	1 cut(s)	650
StyD4I	CCNGG	5 cut(s)	39, 55, 294, 295, 448
StyI	CCWWGG	2 cut(s)	171, 523
TaaI	ACNGT	2 cut(s)	379, 577
TaiI	ACGT	2 cut(s)	337, 696
TasI	AATT	4 cut(s)	88, 536, 600, 744
TatI	WGTACW	2 cut(s)	201, 516
TfiI	GAWTC	2 cut(s)	247, 511
Tru1I	TTAA	3 cut(s)	101, 359, 534
Tru9I	TTAA	3 cut(s)	101, 359, 534
TscAI	CASTG	3 cut(s)	360, 382, 474
TseFI	GTSAC	3 cut(s)	73, 319, 568
TseI	GCWGC	3 cut(s)	266, 291, 368
Tsp45I	GTSAC	3 cut(s)	73, 319, 568
TspMI	CCCGGG	1 cut(s)	295
TspRI	CASTG	3 cut(s)	360, 382, 474
Van91I	CCANNNNNTGG	1 cut(s)	529
XagI	CCTNNNNNAGG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	536
XceI	RCATGY	2 cut(s)	671, 760
XmaI	CCCGGG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	637
XspI	CTAG	1 cut(s)	650
ZrmI	AGTACT	2 cut(s)	203, 518
Zsp2I	ATGCAT	2 cut(s)	10, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.