MD11G1271200.v1.1

sodium metabolite cotransporter BASS1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
38649656 .. 38658210
8555 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1271200.v1.1.491

Sequence Viewer

Length: 1284 bp
ATGCAGTCGTCACTCTCATATCCCCATGGAATCACAGGCTTCTTCAAATTCCAACCGAACCCCATTTCAAACCAATCGCCACCGACATCCAAATCATTCCCGTTCTCTCACTACACCAACACATCTCTTTCCTCTTCTTCCATTCAGCTCGCTCTAAGATCCCACTGCAACTCGCAACCACAATTGCAACCACAATTTCCCAGCAAACCCACTTGGCATCTACCCTCGAATCCCTTTTCACCGATACCAACAGCCAAGAACGCACGATTACCACTAGCTCCGCTTCACTGCGGCATTTCGTCGAACAACTCCAACGCAAATGCGACTAGGAGTTTCAGAGATTGGGTTGAACTGGTTGGTGAGGCTGTGTCGACTGCATTTCCGATTTGGGTTGCTTTGGGGTGCCTGTTGGGGCTGCTCAAGCCGAGCTCCTTCAATTGGGTCACACCCAACTACAACATCTTAGGTTTGACACTGACCATGCTCGGCATGGGCATGACCCTCACTTTCGCCGACCTTCGTGGCGCCTTGGCTATGCCCAAGGAGTTGCTTGCTGGCTTTGTTCTTCAGTACTCGGTGATGCCTTTATCAGGATATTTTGTGAGCAAGCTTTTGAATTTGCCATCGTATTATGCAGCTGGTTTGATATTGGTTGGTTGCTGCCCAGGTGGAACAGCAAGTAACATTGTAACTTATATTGCACGTGGAAATGTGGCACTTTCGGTTTTAATGACAGCAGCAAGCACTTTATCAGCTGTGATCATGACCCCATTTCTCACAGCTAAACTTGCCGGCCAATATGTTGCCGTAGATGCAGCTGGGCTCTTATTCTCAACACTGCAGGTTGTGCTTCTCCCTGTTTTGGCGGGTGCATTTCTGAATCAGTATTTCCAAGGCCTGGTTAAATTCGTCTCCCCCGTGATGCCACCCATTGCTGTAGCAACTGTAGGTGTTCTTTGTGGGAATGCAATTGCCCAGAGTTCATCTGCAATCCTTACATCTGGTAAACAAGTGGTGCTTGCTTCCGCTCTTCTTCATGCAAGTGGATTTTTCTTTGGATACATCTTTTCAAGGATGCTTGGGCTCGATGTCACATCATCAAGGACTATCTCCATCGAGGTTGGCATGCAGAATTCGGTGCTTGGAATTGTTCTAGCCGGTCAGCACTTCGGAAACCCTCTAACTGCGGTACCATGTGCTGTTTCCAGCGTTTCTCATTCAATCTTGGGTAGTGCCTTGGCAGGATTCTGGAGACAGACCGTACCAACCCAGAAGCAAGATTGA

Protein Analysis

428

Amino Acids

45.13

Weight (kDa)

9.45

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBF_like PF13593 153 - 418 3.2e-13 SBF-like CPA transporter family (DUF4137)
SBF PF01758 155 - 331 2.6e-40 Sodium Bile acid symporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 832
Acc65I GGTACC 1 cut(s) 1189
AccB1I GGYRCC 3 cut(s) 402, 524, 1189
AccB7I CCANNNNNTGG 1 cut(s) 898
AccBSI CCGCTC 1 cut(s) 1028
AccI GTMKAC 1 cut(s) 371
AciI CCGC 5 cut(s) 281, 291, 866, 1026, 1187
AclWI GGATC 1 cut(s) 153
AcoI YGGCCR 1 cut(s) 793
AcsI RAATTY 4 cut(s) 47, 616, 905, 1132
AcuI CTGAAG 1 cut(s) 551
AcvI CACGTG 1 cut(s) 704
AcyI GRCGYC 1 cut(s) 525
AfaI GTAC 3 cut(s) 572, 1191, 1263
AfiI CCNNNNNNNGG 4 cut(s) 438, 590, 862, 898
AgsI TTSAA 7 cut(s) 46, 69, 350, 436, 616, 1071, 1221
AjnI CCWGG 2 cut(s) 664, 897
AluBI AGCT 8 cut(s) 148, 278, 429, 610, 638, 755, 782, 818
AluI AGCT 8 cut(s) 148, 278, 429, 610, 638, 755, 782, 818
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 2 cut(s) 916, 1246
AlwI GGATC 1 cut(s) 153
AoxI GGCC 2 cut(s) 793, 895
ApeKI GCWGC 5 cut(s) 415, 635, 660, 737, 815
ApoI RAATTY 4 cut(s) 47, 616, 905, 1132
Asp718I GGTACC 1 cut(s) 1189
AspLEI GCGC 1 cut(s) 527
AsuHPI GGTGA 3 cut(s) 231, 371, 589
BaeI ACNNNNGTAYC 2 cut(s) 1173, 1206
BanI GGYRCC 3 cut(s) 402, 524, 1189
BanII GRGCYC 3 cut(s) 431, 825, 1086
BbrPI CACGTG 1 cut(s) 704
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 5 cut(s) 402, 647, 647, 749, 827
BccI CCATC 2 cut(s) 631, 1121
BceAI ACGGC 1 cut(s) 791
BciT130I CCWGG 2 cut(s) 666, 899
BciVI GTATCC 1 cut(s) 1052
BclI TGATCA 1 cut(s) 759
BcoDI GTCTC 2 cut(s) 916, 1246
BfaI CTAG 3 cut(s) 275, 327, 1154
BfmI CTRYAG 3 cut(s) 839, 936, 945
BfoI RGCGCY 1 cut(s) 528
BfuAI ACCTGC 1 cut(s) 832
BfuI GTATCC 1 cut(s) 1052
BisI GCNGC 6 cut(s) 292, 416, 636, 661, 738, 816
BlsI GCNGC 6 cut(s) 293, 417, 637, 662, 739, 817
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 2 cut(s) 666, 899
BmiI GGNNCC 3 cut(s) 404, 526, 1191
BmrFI CCNGG 2 cut(s) 666, 899
BmsI GCATC 5 cut(s) 226, 570, 802, 912, 1065
BpmI CTGGAG 1 cut(s) 1270
BpuEI CTTGAG 1 cut(s) 404
BsaAI YACGTR 1 cut(s) 704
BsaHI GRCGYC 1 cut(s) 525
BsaJI CCNNGG 6 cut(s) 25, 528, 540, 664, 892, 1236
Bsc4I CCNNNNNNNGG 4 cut(s) 438, 590, 862, 898
Bse118I RCCGGY 2 cut(s) 791, 1157
Bse1I ACTGG 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 930
BseBI CCWGG 2 cut(s) 666, 899
BseDI CCNNGG 6 cut(s) 25, 528, 540, 664, 892, 1236
BseGI GGATG 2 cut(s) 86, 1080
BseLI CCNNNNNNNGG 4 cut(s) 438, 590, 862, 898
BseMI GCAATG 1 cut(s) 930
BseNI ACTGG 1 cut(s) 357
BseXI GCAGC 5 cut(s) 402, 647, 647, 749, 827
BseYI CCCAGC 2 cut(s) 200, 818
BshFI GGCC 2 cut(s) 795, 897
BshNI GGYRCC 3 cut(s) 402, 524, 1189
BsiHKAI GWGCWC 1 cut(s) 431
BsiSI CCGG 2 cut(s) 792, 1158
BslI CCNNNNNNNGG 4 cut(s) 438, 590, 862, 898
BsmAI GTCTC 2 cut(s) 916, 1246
BsmBI CGTCTC 1 cut(s) 916
BsmI GAATGC 1 cut(s) 970
BsnI GGCC 2 cut(s) 795, 897
Bsp1286I GDGCHC 3 cut(s) 431, 825, 1086
Bsp143I GATC 2 cut(s) 158, 759
Bsp19I CCATGG 1 cut(s) 25
BspACI CCGC 5 cut(s) 281, 291, 866, 1026, 1187
BspANI GGCC 2 cut(s) 795, 897
BspHI TCATGA 1 cut(s) 762
BspLI GGNNCC 3 cut(s) 404, 526, 1191
BspMAI CTGCAG 1 cut(s) 843
BspMI ACCTGC 1 cut(s) 832
BspPI GGATC 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 1035
BspT107I GGYRCC 3 cut(s) 402, 524, 1189
BsrBI CCGCTC 1 cut(s) 1028
BsrDI GCAATG 1 cut(s) 930
BsrFI RCCGGY 2 cut(s) 791, 1157
BsrI ACTGG 1 cut(s) 357
BssAI RCCGGY 2 cut(s) 791, 1157
BssECI CCNNGG 6 cut(s) 25, 528, 540, 664, 892, 1236
BssMI GATC 2 cut(s) 158, 759
BssNI GRCGYC 1 cut(s) 525
BssT1I CCWWGG 5 cut(s) 25, 528, 540, 892, 1236
Bst2UI CCWGG 2 cut(s) 666, 899
Bst4CI ACNGT 2 cut(s) 946, 1261
Bst6I CTCTTC 2 cut(s) 139, 1035
BstACI GRCGYC 1 cut(s) 525
BstAPI GCANNNNNTGC 1 cut(s) 847
BstBAI YACGTR 1 cut(s) 704
BstC8I GCNNGC 8 cut(s) 150, 552, 556, 608, 742, 793, 1020, 1127
BstDEI CTNAG 2 cut(s) 155, 463
BstDSI CCRYGG 1 cut(s) 25
BstENI CCTNNNNNAGG 1 cut(s) 588
BstF5I GGATG 2 cut(s) 86, 1080
BstH2I RGCGCY 1 cut(s) 528
BstHHI GCGC 1 cut(s) 527
BstKTI GATC 2 cut(s) 161, 762
BstMAI GTCTC 2 cut(s) 916, 1246
BstMBI GATC 2 cut(s) 158, 759
BstMWI GCNNNNNNNGC 5 cut(s) 260, 421, 788, 812, 847
BstNI CCWGG 2 cut(s) 666, 899
BstNSI RCATGY 1 cut(s) 1129
BstSCI CCNGG 2 cut(s) 664, 897
BstSFI CTRYAG 3 cut(s) 839, 936, 945
BstV1I GCAGC 5 cut(s) 402, 647, 647, 749, 827
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BsuI GTATCC 1 cut(s) 1052
BsuRI GGCC 2 cut(s) 795, 897
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 2 cut(s) 86, 1080
BtsI GCAGTG 3 cut(s) 163, 286, 836
BtsIMutI CAGTG 4 cut(s) 163, 286, 473, 836
BveI ACCTGC 1 cut(s) 832
Cac8I GCNNGC 8 cut(s) 150, 552, 556, 608, 742, 793, 1020, 1127
CciI TCATGA 1 cut(s) 762
CfoI GCGC 1 cut(s) 527
Cfr10I RCCGGY 2 cut(s) 791, 1157
Csp6I GTAC 3 cut(s) 571, 1190, 1262
CviAII CATG 8 cut(s) 26, 481, 490, 496, 763, 1037, 1126, 1194
CviQI GTAC 3 cut(s) 571, 1190, 1262
DdeI CTNAG 2 cut(s) 155, 463
DinI GGCGCC 1 cut(s) 526
DpnI GATC 2 cut(s) 160, 761
DpnII GATC 2 cut(s) 158, 759
EaeI YGGCCR 1 cut(s) 793
Eam1104I CTCTTC 2 cut(s) 139, 1035
EarI CTCTTC 2 cut(s) 139, 1035
Ecl136II GAGCTC 1 cut(s) 429
Eco130I CCWWGG 5 cut(s) 25, 528, 540, 892, 1236
Eco147I AGGCCT 1 cut(s) 897
Eco24I GRGCYC 3 cut(s) 431, 825, 1086
Eco53kI GAGCTC 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 551
Eco72I CACGTG 1 cut(s) 704
EcoICRI GAGCTC 1 cut(s) 429
EcoNI CCTNNNNNAGG 1 cut(s) 588
EcoRI GAATTC 1 cut(s) 1132
EcoRII CCWGG 2 cut(s) 664, 897
EcoT14I CCWWGG 5 cut(s) 25, 528, 540, 892, 1236
EcoT38I GRGCYC 3 cut(s) 431, 825, 1086
EgeI GGCGCC 1 cut(s) 526
EheI GGCGCC 1 cut(s) 526
ErhI CCWWGG 5 cut(s) 25, 528, 540, 892, 1236
Esp3I CGTCTC 1 cut(s) 916
FaeI CATG 8 cut(s) 29, 484, 493, 499, 766, 1040, 1129, 1197
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FatI CATG 8 cut(s) 25, 480, 489, 495, 762, 1036, 1125, 1193
FauI CCCGC 1 cut(s) 859
FbaI TGATCA 1 cut(s) 759
FblI GTMKAC 1 cut(s) 371
Fnu4HI GCNGC 6 cut(s) 292, 416, 636, 661, 738, 816
FokI GGATG 2 cut(s) 73, 1087
FriOI GRGCYC 3 cut(s) 431, 825, 1086
Fsp4HI GCNGC 6 cut(s) 292, 416, 636, 661, 738, 816
FspBI CTAG 3 cut(s) 275, 327, 1154
GlaI GCGC 1 cut(s) 526
GluI GCNGC 6 cut(s) 292, 416, 636, 661, 738, 816
GsaI CCCAGC 2 cut(s) 204, 822
GsuI CTGGAG 1 cut(s) 1270
HaeII RGCGCY 1 cut(s) 528
HaeIII GGCC 2 cut(s) 795, 897
HapII CCGG 2 cut(s) 792, 1158
HhaI GCGC 1 cut(s) 527
Hin1I GRCGYC 1 cut(s) 525
Hin1II CATG 8 cut(s) 29, 484, 493, 499, 766, 1040, 1129, 1197
Hin6I GCGC 1 cut(s) 525
HinP1I GCGC 1 cut(s) 525
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 4 cut(s) 30, 229, 880, 1245
HpaII CCGG 2 cut(s) 792, 1158
HphI GGTGA 3 cut(s) 231, 371, 589
Hpy166II GTNNAC 2 cut(s) 372, 1007
Hpy188I TCNGA 4 cut(s) 338, 384, 879, 1172
Hpy188III TCNNGA 3 cut(s) 591, 763, 1249
Hpy8I GTNNAC 2 cut(s) 372, 1007
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 2 cut(s) 442, 527
HpyCH4III ACNGT 2 cut(s) 946, 1261
HpyCH4IV ACGT 1 cut(s) 703
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 421, 788, 812, 847
HpyF3I CTNAG 2 cut(s) 155, 463
HpySE526I ACGT 1 cut(s) 703
Hsp92I GRCGYC 1 cut(s) 525
Hsp92II CATG 8 cut(s) 29, 484, 493, 499, 766, 1040, 1129, 1197
HspAI GCGC 1 cut(s) 525
KasI GGCGCC 1 cut(s) 524
KpnI GGTACC 1 cut(s) 1193
KroI GCCGGC 1 cut(s) 791
KroNI GCCGGC 1 cut(s) 793
Ksp22I TGATCA 1 cut(s) 759
Kzo9I GATC 2 cut(s) 158, 759
LguI GCTCTTC 1 cut(s) 1035
LmnI GCTCC 2 cut(s) 283, 434
Lsp1109I GCAGC 5 cut(s) 402, 647, 647, 749, 827
LweI GCATC 5 cut(s) 226, 570, 802, 912, 1065
MaeI CTAG 3 cut(s) 275, 327, 1154
MaeII ACGT 1 cut(s) 703
MaeIII GTNAC 5 cut(s) 9, 442, 680, 688, 1090
MalI GATC 2 cut(s) 160, 761
MbiI CCGCTC 1 cut(s) 1028
MboI GATC 2 cut(s) 158, 759
MboII GAAGA 6 cut(s) 34, 126, 129, 557, 1022, 1025
MfeI CAATTG 3 cut(s) 182, 436, 969
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 3 cut(s) 431, 825, 1086
MluCI AATT 9 cut(s) 47, 182, 194, 436, 616, 905, 969, 1132, 1146
Mly113I GGCGCC 1 cut(s) 525
MmeI TCCRAC 2 cut(s) 76, 336
MnlI CCTC 6 cut(s) 142, 235, 355, 512, 1111, 1188
MroNI GCCGGC 1 cut(s) 791
MseI TTAA 2 cut(s) 728, 903
MslI CAYNNNNRTG 2 cut(s) 494, 1041
MspA1I CMGCKG 3 cut(s) 638, 755, 818
MspI CCGG 2 cut(s) 792, 1158
MspR9I CCNGG 2 cut(s) 666, 899
MunI CAATTG 3 cut(s) 182, 436, 969
Mva1269I GAATGC 1 cut(s) 970
MvaI CCWGG 2 cut(s) 666, 899
MwoI GCNNNNNNNGC 5 cut(s) 260, 421, 788, 812, 847
NaeI GCCGGC 1 cut(s) 793
NarI GGCGCC 1 cut(s) 525
NcoI CCATGG 1 cut(s) 25
NdeII GATC 2 cut(s) 158, 759
NgoMIV GCCGGC 1 cut(s) 791
NlaIII CATG 8 cut(s) 29, 484, 493, 499, 766, 1040, 1129, 1197
NlaIV GGNNCC 3 cut(s) 404, 526, 1191
NmeAIII GCCGAG 2 cut(s) 450, 465
NmuCI GTSAC 3 cut(s) 9, 442, 1090
NspI RCATGY 1 cut(s) 1129
PaeI GCATGC 1 cut(s) 1129
PagI TCATGA 1 cut(s) 762
PceI AGGCCT 1 cut(s) 897
PciSI GCTCTTC 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 915
PctI GAATGC 1 cut(s) 970
PdiI GCCGGC 1 cut(s) 793
PfeI GAWTC 4 cut(s) 30, 229, 880, 1245
PflMI CCANNNNNTGG 1 cut(s) 898
PkrI GCNGC 6 cut(s) 293, 417, 637, 662, 739, 817
PluTI GGCGCC 1 cut(s) 528
PmaCI CACGTG 1 cut(s) 704
PmlI CACGTG 1 cut(s) 704
Ppu21I YACGTR 1 cut(s) 704
Psp124BI GAGCTC 1 cut(s) 431
Psp6I CCWGG 2 cut(s) 664, 897
PspCI CACGTG 1 cut(s) 704
PspFI CCCAGC 2 cut(s) 200, 818
PspGI CCWGG 2 cut(s) 664, 897
PspN4I GGNNCC 3 cut(s) 404, 526, 1191
PstI CTGCAG 1 cut(s) 843
PsuI RGATCY 1 cut(s) 158
PvuII CAGCTG 3 cut(s) 638, 755, 818
RsaI GTAC 3 cut(s) 572, 1191, 1263
RsaNI GTAC 3 cut(s) 571, 1190, 1262
RseI CAYNNNNRTG 2 cut(s) 494, 1041
SacI GAGCTC 1 cut(s) 431
SalI GTCGAC 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 1035
SaqAI TTAA 2 cut(s) 728, 903
SatI GCNGC 6 cut(s) 292, 416, 636, 661, 738, 816
Sau3AI GATC 2 cut(s) 158, 759
ScaI AGTACT 1 cut(s) 572
ScrFI CCNGG 2 cut(s) 666, 899
SduI GDGCHC 3 cut(s) 431, 825, 1086
SfaNI GCATC 5 cut(s) 226, 570, 802, 912, 1065
SfcI CTRYAG 3 cut(s) 839, 936, 945
SfoI GGCGCC 1 cut(s) 526
SmiMI CAYNNNNRTG 2 cut(s) 494, 1041
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SphI GCATGC 1 cut(s) 1129
Sse9I AATT 9 cut(s) 47, 182, 194, 436, 616, 905, 969, 1132, 1146
SseBI AGGCCT 1 cut(s) 897
SsiI CCGC 5 cut(s) 281, 291, 866, 1026, 1187
SspDI GGCGCC 1 cut(s) 524
SspMI CTAG 3 cut(s) 275, 327, 1154
SstI GAGCTC 1 cut(s) 431
StuI AGGCCT 1 cut(s) 897
StyD4I CCNGG 2 cut(s) 664, 897
StyI CCWWGG 5 cut(s) 25, 528, 540, 892, 1236
TaaI ACNGT 2 cut(s) 946, 1261
TaiI ACGT 1 cut(s) 706
TaqI TCGA 5 cut(s) 227, 302, 371, 1086, 1116
TasI AATT 9 cut(s) 47, 182, 194, 436, 616, 905, 969, 1132, 1146
TatI WGTACW 1 cut(s) 570
TauI GCSGC 1 cut(s) 294
TfiI GAWTC 4 cut(s) 30, 229, 880, 1245
Tru1I TTAA 2 cut(s) 728, 903
Tru9I TTAA 2 cut(s) 728, 903
TscAI CASTG 4 cut(s) 170, 293, 480, 843
TseFI GTSAC 3 cut(s) 9, 442, 1090
TseI GCWGC 5 cut(s) 415, 635, 660, 737, 815
Tsp45I GTSAC 3 cut(s) 9, 442, 1090
TspDTI ATGAA 2 cut(s) 972, 1025
TspRI CASTG 4 cut(s) 170, 293, 480, 843
Van91I CCANNNNNTGG 1 cut(s) 898
XagI CCTNNNNNAGG 1 cut(s) 588
XapI RAATTY 4 cut(s) 47, 616, 905, 1132
XceI RCATGY 1 cut(s) 1129
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 371
XspI CTAG 3 cut(s) 275, 327, 1154
ZrmI AGTACT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.