Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006339

Physical Location & Seq

Genomic Coordinates Reverse (-)

24219408 .. 24219995

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG205200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCAGTTGACAGTACTTCCATACTTCCATGGCAACAGAGCCTTCAGATTCCAAGTAAACCCAAACCCCATTTCGAACCAATCACCACTCAGAGCTACTAAACCATCACCTTCCTCCTCTATTCAACTCACACCAAGATCCCACTCTCACCCACAATCACCGTCTCTCCAAAACCCCAAATGGCCCCTCCCCTCAACTCCCTTCTCCTCCATCGCAGCCACCACAAAGAAGCCGCAGTCATCAGTGGCTCCAGTTCGTTCAGGCATTTCGTCGAACAGCTTCAGTGCCAATGGCAAAAGGAGCTTCAGGGACTGGGTTGAAGCGGTGAGTGAGGCTGTTTCCAATGCATTTCCGATATGGGTTGCTTTGGGGTGCCTCCTGGGCCTCATCAGTCCCGGTTCCTTCAACTGGGTCACACCCAAGCTCAATTTTTTCGGCTTAACGCTCACTATGCTTGGAATGGGTATGACCCTCACTTTCAATGACCTTAGGGACGCTTTGGCTATGCCCAAGGAGTTGTTCTCTGGCTTCTTTCTTCAGTACTCGGTAAGTCTTTGCTTGAATTTTGGTTACCTACATTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

195

Amino Acids

21.43

Weight (kDa)

10.18

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78560
fragaria_vesca	FvH4_3g17590 FvH4_3g17590 FvH4_3g17590 FvH4_3g17590
malus_domestica	MD03G1250900.v1.1 MD03G1251000.v1.1 MD03G1251100.v1.1 MD03G1251200.v1.1 MD11G1271200.v1.1
prunus_persica	Prupe.4G155400_v2.0.a1
pyrus_communis	pycom03g19860 pycom11g23980 pycom11g24010 pycom11g24030
rosa_chinensis	RchiOBHm_Chr5g0029301
rosa_laevigata	RLG00000033151
rosa_multiflora	Rmu_ssc0000405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050710
rosa_rugosa	Rorug05G0112900
rosa_samantha	Rh2BG192800 Rh5AG205100 Rh5AG205200 Rh5BG203700 Rh5CG225100 Rh5DG207300
rosa_wichuraiana	Rw5G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	372
AciI	CCGC	2 cut(s)	233, 323
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	562
AcuI	CTGAAG	4 cut(s)	28, 265, 289, 521
AfaI	GTAC	2 cut(s)	15, 542
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	5 cut(s)	125, 320, 406, 481, 562
AjnI	CCWGG	1 cut(s)	378
AjuI	GAANNNNNNNTTGG	4 cut(s)	55, 87, 503, 535
AluBI	AGCT	4 cut(s)	95, 279, 303, 424
AluI	AGCT	4 cut(s)	95, 279, 303, 424
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	312
AoxI	GGCC	2 cut(s)	182, 382
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	562
Asp700I	GAANNNNTTC	1 cut(s)	278
AspS9I	GGNCC	2 cut(s)	183, 382
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	5 cut(s)	75, 99, 140, 150, 337
AsuII	TTCGAA	1 cut(s)	74
AxyI	CCTNAGG	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	2 cut(s)	112, 218
BciT130I	CCWGG	1 cut(s)	380
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	381
BisI	GCNGC	2 cut(s)	216, 233
BlsI	GCNGC	2 cut(s)	217, 234
BmcAI	AGTACT	2 cut(s)	15, 542
Bme1390I	CCNGG	2 cut(s)	380, 396
BmgT120I	GGNCC	2 cut(s)	183, 382
BmiI	GGNNCC	4 cut(s)	185, 249, 374, 400
BmrFI	CCNGG	2 cut(s)	380, 396
BmrI	ACTGGG	2 cut(s)	322, 418
BmuI	ACTGGG	2 cut(s)	322, 418
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
BpmI	CTGGAG	1 cut(s)	234
Bpu14I	TTCGAA	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	28, 379, 510
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	3 cut(s)	251, 317, 413
Bse21I	CCTNAGG	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	3 cut(s)	28, 379, 510
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	103
BseNI	ACTGG	3 cut(s)	251, 317, 413
BseRI	GAGGAG	2 cut(s)	106, 196
BseXI	GCAGC	1 cut(s)	227
BshFI	GGCC	2 cut(s)	184, 384
BshNI	GGYRCC	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	3 cut(s)	323, 378, 506
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	168
BsmBI	CGTCTC	1 cut(s)	168
BsmFI	GGGAC	3 cut(s)	323, 378, 506
BsnI	GGCC	2 cut(s)	184, 384
Bsp119I	TTCGAA	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	137
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	2 cut(s)	233, 323
BspANI	GGCC	2 cut(s)	184, 384
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	4 cut(s)	185, 249, 374, 400
BspPI	GGATC	1 cut(s)	132
BspT104I	TTCGAA	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	372
BsrI	ACTGG	3 cut(s)	251, 317, 413
BssECI	CCNNGG	3 cut(s)	28, 379, 510
BssMI	GATC	1 cut(s)	137
BssT1I	CCWWGG	2 cut(s)	28, 510
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	13, 162
BstBI	TTCGAA	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	89, 488
BstDSI	CCRYGG	1 cut(s)	28
BstEII	GGTNACC	1 cut(s)	569
BstKTI	GATC	1 cut(s)	140
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	3 cut(s)	300, 381, 451
BstNI	CCWGG	1 cut(s)	380
BstPI	GGTNACC	1 cut(s)	569
BstSCI	CCNGG	2 cut(s)	378, 394
BstV1I	GCAGC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
Bsu36I	CCTNAGG	1 cut(s)	488
BsuRI	GGCC	2 cut(s)	184, 384
BtgI	CCRYGG	1 cut(s)	28
BtgZI	GCGATG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	249, 289
CaiI	CAGNNNCTG	1 cut(s)	312
Cfr13I	GGNCC	2 cut(s)	183, 382
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	2 cut(s)	14, 541
CviAII	CATG	1 cut(s)	29
CviQI	GTAC	2 cut(s)	14, 541
DdeI	CTNAG	2 cut(s)	89, 488
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
Eco130I	CCWWGG	2 cut(s)	28, 510
Eco57I	CTGAAG	4 cut(s)	28, 265, 289, 521
Eco81I	CCTNAGG	1 cut(s)	488
Eco91I	GGTNACC	1 cut(s)	569
EcoO65I	GGTNACC	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	28, 510
EcoT22I	ATGCAT	1 cut(s)	349
ErhI	CCWWGG	2 cut(s)	28, 510
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	1 cut(s)	32
FaiI	YATR	6 cut(s)	22, 30, 358, 452, 467, 506
FaqI	GGGAC	3 cut(s)	323, 378, 506
FatI	CATG	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	216, 233
Fsp4HI	GCNGC	2 cut(s)	216, 233
GluI	GCNGC	2 cut(s)	216, 233
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	184, 384
HapII	CCGG	1 cut(s)	396
HgaI	GACGC	1 cut(s)	503
Hin1II	CATG	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	5 cut(s)	75, 99, 140, 150, 337
Hpy166II	GTNNAC	2 cut(s)	9, 58
Hpy188I	TCNGA	3 cut(s)	47, 92, 354
Hpy8I	GTNNAC	2 cut(s)	9, 58
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	4 cut(s)	52, 120, 211, 412
HpyCH4III	ACNGT	2 cut(s)	13, 162
HpyCH4V	TGCA	2 cut(s)	4, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	300, 381, 451
HpyF3I	CTNAG	2 cut(s)	89, 488
Hsp92II	CATG	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	137
LmnI	GCTCC	2 cut(s)	253, 300
LpnPI	CCDG	9 cut(s)	246, 264, 292, 298, 365, 392, 394, 409, 510
Lsp1109I	GCAGC	1 cut(s)	227
MaeIII	GTNAC	2 cut(s)	412, 569
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	1 cut(s)	527
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	2 cut(s)	427, 562
MnlI	CCTC	9 cut(s)	124, 127, 197, 202, 217, 325, 386, 395, 482
Mph1103I	ATGCAT	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	2 cut(s)	440, 586
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	2 cut(s)	380, 396
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	3 cut(s)	300, 381, 451
NciI	CCSGG	1 cut(s)	396
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	4 cut(s)	185, 249, 374, 400
NmuCI	GTSAC	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	349
NspV	TTCGAA	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	217, 234
Psp6I	CCWGG	1 cut(s)	378
PspEI	GGTNACC	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	4 cut(s)	185, 249, 374, 400
PspPI	GGNCC	2 cut(s)	183, 382
PstNI	CAGNNNCTG	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	137
RsaI	GTAC	2 cut(s)	15, 542
RsaNI	GTAC	2 cut(s)	14, 541
SaqAI	TTAA	2 cut(s)	440, 586
SatI	GCNGC	2 cut(s)	216, 233
Sau3AI	GATC	1 cut(s)	137
Sau96I	GGNCC	2 cut(s)	183, 382
ScaI	AGTACT	2 cut(s)	15, 542
ScrFI	CCNGG	2 cut(s)	380, 396
SetI	ASST	7 cut(s)	97, 112, 281, 305, 426, 489, 576
SfuI	TTCGAA	1 cut(s)	74
Sse9I	AATT	2 cut(s)	427, 562
SsiI	CCGC	2 cut(s)	233, 323
StyD4I	CCNGG	2 cut(s)	378, 394
StyI	CCWWGG	2 cut(s)	28, 510
TaaI	ACNGT	2 cut(s)	13, 162
TaqI	TCGA	2 cut(s)	74, 272
TasI	AATT	2 cut(s)	427, 562
TatI	WGTACW	2 cut(s)	13, 540
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	2 cut(s)	440, 586
Tru9I	TTAA	2 cut(s)	440, 586
TscAI	CASTG	2 cut(s)	249, 289
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	412
TspRI	CASTG	2 cut(s)	249, 289
XapI	RAATTY	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	278
ZrmI	AGTACT	2 cut(s)	15, 542
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.