Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006339

Physical Location & Seq

Genomic Coordinates Forward (+)

33900536 .. 33901549

Gene Structure 1014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1251100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGATCCCCTTTCTCACAGCTAAACTTGCCGGTCAATATGTTGCAGTAGATGCTACTGGGCTTCTGTTCTCAACACTGCAGGTTGTGCTTCTCCCTGTTTTGGCCGGTGCATTTCTGAATCAGTATTTCGAATGCCTGGTTAAATTTGTATCCCCTTTGATGCCACCCATTGCTGTGGCAACTGTAGCTGTTCTTTGTGGGAATGCAATTGCCCAGAGTTCTTCTGCAATCCTTACTTCTGGTAAACAAGTGGTGCTAGCTGCCGCTCTTCTTCATGTAAGTGGATTTTTCTTCAGTAACATCTTTTCAAGGATACTTGGGATAGATGTCGCATCATCAAGGACTATCTCCATCGAGGTTGGCATGCAGGTGGTGATTTCCCAATTGCCGCACAAGCTAAAGCCAGACTGGTTTGATTCCTGTTATCTGAATGCAATGAACAAACAACGAGGTGGTTCGATCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

156

Amino Acids

16.5

Weight (kDa)

8.91

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF	PF01758	1 - 77	5.3e-06	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78560
fragaria_vesca	FvH4_3g17590 FvH4_3g17590 FvH4_3g17590 FvH4_3g17590
malus_domestica	MD03G1250900.v1.1 MD03G1251000.v1.1 MD03G1251100.v1.1 MD03G1251200.v1.1 MD11G1271200.v1.1
prunus_persica	Prupe.4G155400_v2.0.a1
pyrus_communis	pycom03g19860 pycom11g23980 pycom11g24010 pycom11g24030
rosa_chinensis	RchiOBHm_Chr5g0029301
rosa_laevigata	RLG00000033151
rosa_multiflora	Rmu_ssc0000405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050710
rosa_rugosa	Rorug05G0112900
rosa_samantha	Rh2BG192800 Rh5AG205100 Rh5AG205200 Rh5BG203700 Rh5CG225100 Rh5DG207300
rosa_wichuraiana	Rw5G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	358
Acc36I	ACCTGC	2 cut(s)	70, 358
AccBSI	CCGCTC	1 cut(s)	266
AciI	CCGC	2 cut(s)	264, 389
AclWI	GGATC	1 cut(s)	454
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	309
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	4 cut(s)	20, 188, 260, 397
AluI	AGCT	4 cut(s)	20, 188, 260, 397
AlwI	GGATC	1 cut(s)	454
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	385
AsuII	TTCGAA	1 cut(s)	129
AsuNHI	GCTAGC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	137
BciVI	GTATCC	2 cut(s)	160, 306
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	2 cut(s)	77, 183
BfuAI	ACCTGC	2 cut(s)	70, 358
BfuI	GTATCC	2 cut(s)	160, 306
BisI	GCNGC	3 cut(s)	261, 264, 389
BlsI	GCNGC	3 cut(s)	262, 265, 390
Bme1390I	CCNGG	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	137
BmrI	ACTGGG	1 cut(s)	66
BmsI	GCATC	3 cut(s)	40, 150, 341
BmtI	GCTAGC	1 cut(s)	260
BmuI	ACTGGG	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	2 cut(s)	29, 104
Bse1I	ACTGG	2 cut(s)	61, 413
Bse3DI	GCAATG	2 cut(s)	168, 441
BseBI	CCWGG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	2 cut(s)	168, 441
BseNI	ACTGG	2 cut(s)	61, 413
BseXI	GCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	30, 105
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmI	GAATGC	3 cut(s)	137, 208, 436
BsnI	GGCC	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	129
Bsp143I	GATC	2 cut(s)	3, 459
BspACI	CCGC	2 cut(s)	264, 389
BspANI	GGCC	1 cut(s)	104
BspMAI	CTGCAG	1 cut(s)	81
BspMI	ACCTGC	2 cut(s)	70, 358
BspOI	GCTAGC	1 cut(s)	260
BspPI	GGATC	1 cut(s)	454
BspQI	GCTCTTC	1 cut(s)	273
BspT104I	TTCGAA	1 cut(s)	129
BsrBI	CCGCTC	1 cut(s)	266
BsrDI	GCAATG	2 cut(s)	168, 441
BsrFI	RCCGGY	2 cut(s)	29, 104
BsrI	ACTGG	2 cut(s)	61, 413
BssAI	RCCGGY	2 cut(s)	29, 104
BssMI	GATC	2 cut(s)	3, 459
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	273
BstAPI	GCANNNNNTGC	2 cut(s)	50, 85
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	258, 365
BstKTI	GATC	2 cut(s)	6, 462
BstMBI	GATC	2 cut(s)	3, 459
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 50, 85, 185, 394
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	2 cut(s)	77, 183
BstV1I	GCAGC	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	175
BsuI	GTATCC	2 cut(s)	160, 306
BsuRI	GGCC	1 cut(s)	104
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	74
BveI	ACCTGC	2 cut(s)	70, 358
Cac8I	GCNNGC	2 cut(s)	258, 365
Cfr10I	RCCGGY	2 cut(s)	29, 104
CviAII	CATG	2 cut(s)	275, 364
CviJI	RGCY	7 cut(s)	20, 61, 104, 188, 260, 397, 403
CviKI_1	RGCY	7 cut(s)	20, 61, 104, 188, 260, 397, 403
DpnI	GATC	2 cut(s)	5, 461
DpnII	GATC	2 cut(s)	3, 459
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	278, 367
FaiI	YATR	4 cut(s)	39, 276, 365, 466
FatI	CATG	2 cut(s)	274, 363
Fnu4HI	GCNGC	3 cut(s)	261, 264, 389
Fsp4HI	GCNGC	3 cut(s)	261, 264, 389
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	3 cut(s)	261, 264, 389
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	2 cut(s)	30, 105
Hin1II	CATG	2 cut(s)	278, 367
HinfI	GANTC	2 cut(s)	118, 416
HpaII	CCGG	2 cut(s)	30, 105
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	2 cut(s)	117, 429
Hpy8I	GTNNAC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	7 cut(s)	44, 79, 110, 206, 227, 367, 434
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 50, 85, 185, 394
Hsp92II	CATG	2 cut(s)	278, 367
Kzo9I	GATC	2 cut(s)	3, 459
LguI	GCTCTTC	1 cut(s)	273
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	3 cut(s)	40, 150, 341
MaeI	CTAG	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	2 cut(s)	5, 461
MbiI	CCGCTC	1 cut(s)	266
MboI	GATC	2 cut(s)	3, 459
MboII	GAAGA	4 cut(s)	213, 260, 263, 283
MfeI	CAATTG	2 cut(s)	207, 383
MluCI	AATT	3 cut(s)	143, 207, 383
MnlI	CCTC	2 cut(s)	349, 443
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	3 cut(s)	173, 279, 368
MspI	CCGG	2 cut(s)	30, 105
MspR9I	CCNGG	1 cut(s)	137
MunI	CAATTG	2 cut(s)	207, 383
Mva1269I	GAATGC	3 cut(s)	137, 208, 436
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	5 cut(s)	26, 50, 85, 185, 394
NdeII	GATC	2 cut(s)	3, 459
NheI	GCTAGC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	278, 367
NspI	RCATGY	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	129
PaeI	GCATGC	1 cut(s)	367
PaqCI	CACCTGC	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	273
PctI	GAATGC	3 cut(s)	137, 208, 436
PfeI	GAWTC	2 cut(s)	118, 416
PkrI	GCNGC	3 cut(s)	262, 265, 390
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PstI	CTGCAG	1 cut(s)	81
RseI	CAYNNNNRTG	3 cut(s)	173, 279, 368
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	3 cut(s)	261, 264, 389
Sau3AI	GATC	2 cut(s)	3, 459
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	8 cut(s)	22, 84, 190, 262, 360, 372, 399, 454
SfaNI	GCATC	3 cut(s)	40, 150, 341
SfcI	CTRYAG	2 cut(s)	77, 183
SfuI	TTCGAA	1 cut(s)	129
SmiMI	CAYNNNNRTG	3 cut(s)	173, 279, 368
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	3 cut(s)	143, 207, 383
SsiI	CCGC	2 cut(s)	264, 389
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	3 cut(s)	129, 354, 458
TasI	AATT	3 cut(s)	143, 207, 383
TauI	GCSGC	2 cut(s)	266, 391
TfiI	GAWTC	2 cut(s)	118, 416
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	263, 452
TspRI	CASTG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	367
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.