Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006339

Physical Location & Seq

Genomic Coordinates Reverse (-)

24217053 .. 24217969

Gene Structure 917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG205100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACCCCTTTTCTCACGGCCAAACTTGCTGGTCAATATGTTGCAGTAGATGCACCTGGAATGTTATTCTCAACACTGCAGGTTGTGCTTCTTCCTGTGATGGCCGGTGCATTTCTGAATCAGTACTTCCAAGGTCTGGTTAAATTTGTCTCCCCCTTGATGCCACCCATTGCTGTGACAACAGTAGGTGTTCTTTGTGGGAACGCAATTGCCCAAAGTTCCTCCGCAATCCTCAAGTCTGGTCTACAAGTTGTGCTAGCTTCCTCCCTTCTGCATGCATCTGGATTTTTCTTTGGTTACGTGCTTTCAAGGTTACTTGGGCTTGATGTGGCATCATCAAGGACTATCTCAATTGAGGTTGGCATGCAGAATTCGGTGCTTGGAGTTGTTCTAGCTACTCAGCACTTTGGAAATCCTCTTACTGCAGTACCATGCGCTGTTTCCAGCGTTTGCCATTCAATCATCGGTAGTGCCTTGGCAGGAATATGGAGACGGAGCGTGCCGAAAGAGGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

172

Amino Acids

17.92

Weight (kDa)

8.55

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF	PF01758	1 - 78	9e-06	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78560
fragaria_vesca	FvH4_3g17590 FvH4_3g17590 FvH4_3g17590 FvH4_3g17590
malus_domestica	MD03G1250900.v1.1 MD03G1251000.v1.1 MD03G1251100.v1.1 MD03G1251200.v1.1 MD11G1271200.v1.1
prunus_persica	Prupe.4G155400_v2.0.a1
pyrus_communis	pycom03g19860 pycom11g23980 pycom11g24010 pycom11g24030
rosa_chinensis	RchiOBHm_Chr5g0029301
rosa_laevigata	RLG00000033151
rosa_multiflora	Rmu_ssc0000405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050710
rosa_rugosa	Rorug05G0112900
rosa_samantha	Rh2BG192800 Rh5AG205100 Rh5AG205200 Rh5BG203700 Rh5CG225100 Rh5DG207300
rosa_wichuraiana	Rw5G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	244
AciI	CCGC	1 cut(s)	225
AcoI	YGGCCR	2 cut(s)	18, 102
AcsI	RAATTY	2 cut(s)	143, 370
AfaI	GTAC	2 cut(s)	125, 429
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	309, 459
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	2 cut(s)	260, 395
AluI	AGCT	2 cut(s)	260, 395
Alw26I	GTCTC	2 cut(s)	154, 484
AoxI	GGCC	2 cut(s)	18, 102
ApoI	RAATTY	2 cut(s)	143, 370
AspLEI	GCGC	1 cut(s)	437
AsuNHI	GCTAGC	1 cut(s)	256
BaeI	ACNNNNGTAYC	2 cut(s)	411, 444
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	154, 484
BfaI	CTAG	2 cut(s)	257, 392
BfmI	CTRYAG	2 cut(s)	77, 423
BfuAI	ACCTGC	1 cut(s)	70
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	4 cut(s)	40, 150, 287, 341
BmtI	GCTAGC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	130, 474
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	130, 474
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	413
BshFI	GGCC	2 cut(s)	20, 104
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	2 cut(s)	154, 484
BsmBI	CGTCTC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	20, 104
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	2 cut(s)	20, 104
BspCNI	CTCAG	1 cut(s)	412
BspMAI	CTGCAG	2 cut(s)	81, 427
BspMI	ACCTGC	1 cut(s)	70
BspOI	GCTAGC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	130, 474
BssT1I	CCWWGG	2 cut(s)	130, 474
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	184
BstAPI	GCANNNNNTGC	2 cut(s)	50, 85
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	4 cut(s)	258, 276, 365, 500
BstDEI	CTNAG	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	437
BstMAI	GTCTC	2 cut(s)	154, 484
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 50, 85
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	2 cut(s)	278, 367
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	2 cut(s)	77, 423
BsuRI	GGCC	2 cut(s)	20, 104
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	74
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	4 cut(s)	258, 276, 365, 500
CfoI	GCGC	1 cut(s)	437
Cfr10I	RCCGGY	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	124, 428
CviAII	CATG	3 cut(s)	275, 364, 432
CviJI	RGCY	5 cut(s)	20, 104, 260, 322, 395
CviKI_1	RGCY	5 cut(s)	20, 104, 260, 322, 395
CviQI	GTAC	2 cut(s)	124, 428
DdeI	CTNAG	1 cut(s)	399
EaeI	YGGCCR	2 cut(s)	18, 102
Eco130I	CCWWGG	2 cut(s)	130, 474
EcoRI	GAATTC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	130, 474
EcoT22I	ATGCAT	1 cut(s)	280
ErhI	CCWWGG	2 cut(s)	130, 474
Esp3I	CGTCTC	1 cut(s)	484
FaeI	CATG	3 cut(s)	278, 367, 435
FaiI	YATR	5 cut(s)	39, 276, 365, 433, 487
FatI	CATG	3 cut(s)	274, 363, 431
FblI	GTMKAC	1 cut(s)	244
FspBI	CTAG	2 cut(s)	257, 392
GlaI	GCGC	1 cut(s)	436
HaeIII	GGCC	2 cut(s)	20, 104
HapII	CCGG	1 cut(s)	105
HhaI	GCGC	1 cut(s)	437
Hin1II	CATG	3 cut(s)	278, 367, 435
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	1 cut(s)	282
Hpy8I	GTNNAC	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	8 cut(s)	44, 53, 79, 110, 274, 278, 367, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 50, 85
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	278, 367, 435
HspAI	GCGC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	495
LweI	GCATC	4 cut(s)	40, 150, 287, 341
MaeI	CTAG	2 cut(s)	257, 392
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	3 cut(s)	175, 296, 312
MboII	GAAGA	1 cut(s)	83
MfeI	CAATTG	2 cut(s)	207, 351
MluCI	AATT	4 cut(s)	143, 207, 351, 370
MnlI	CCTC	6 cut(s)	232, 242, 274, 349, 426, 502
Mph1103I	ATGCAT	1 cut(s)	280
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	173
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	57
MunI	CAATTG	2 cut(s)	207, 351
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	26, 50, 85
NheI	GCTAGC	1 cut(s)	256
NlaIII	CATG	3 cut(s)	278, 367, 435
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	280
NspI	RCATGY	2 cut(s)	278, 367
PaeI	GCATGC	2 cut(s)	278, 367
PfeI	GAWTC	1 cut(s)	118
PflMI	CCANNNNNTGG	1 cut(s)	136
Ppu21I	YACGTR	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PstI	CTGCAG	2 cut(s)	81, 427
RsaI	GTAC	2 cut(s)	125, 429
RsaNI	GTAC	2 cut(s)	124, 428
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	141
ScaI	AGTACT	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	9 cut(s)	58, 84, 136, 190, 262, 303, 314, 360, 397
SfaNI	GCATC	4 cut(s)	40, 150, 287, 341
SfcI	CTRYAG	2 cut(s)	77, 423
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SphI	GCATGC	2 cut(s)	278, 367
Sse9I	AATT	4 cut(s)	143, 207, 351, 370
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	2 cut(s)	257, 392
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	130, 474
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	303
TasI	AATT	4 cut(s)	143, 207, 351, 370
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	508
TspRI	CASTG	1 cut(s)	81
Van91I	CCANNNNNTGG	1 cut(s)	136
XapI	RAATTY	2 cut(s)	143, 370
XceI	RCATGY	2 cut(s)	278, 367
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	2 cut(s)	257, 392
ZrmI	AGTACT	1 cut(s)	125
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.