Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006339

Physical Location & Seq

Genomic Coordinates Forward (+)

33902512 .. 33906023

Gene Structure 3512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1251200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGCAGTCGTCACTCTCATATCACCATGGAATTACAGGCTTCAGATTCCAACCAAACCCCATTTCACTCCTATTCTCTCACTACACCAACACATCTCCTTCCTCCTCTCCTTCTAGTCAACTCGCTCTAAGATCCCATTGCAACTCGCAACCACAATTTCCCAGCAAACCCACATGGCATCTACCCTCGAATCCCTTTCCACTCATACCAACTGCCATGAACGAACGATTATCACTAGCTCCGCTCCACTCTGGCATTTCGTCGAACAACTCCAATGCAAATGCGACCAGGAGTTTCAGGGATTGGTTTGAACTGGTTGGCGAGTCTTTGTCGACTGCATTTCCGATATGGGTTGCTTTGGGGTGCCTGATGGGGCTCGTCAAACCGAGTTCCTTCAATTGGGTCACACCCAACTGTACCATCTTAGGCATTACACTGACCATGCTCGGCATGGGCATGACCCTCACTTTCGACGACCTTCGTGGCGCGTTGTCTATGCCCAAGGAGTTGCTTGCCGGTTTTTTTCTTCAGTACTCGGTGATGCCTTTATCAGGATATTTTGTGAGCAAGCTTTTGAATTTGCCATCGTATTATGCAGCTGGTTTGATATTGGTTGGTTGCTGCCCAGGTGGAACAGCAAGTAACATTGTAACTTATATTGCACGTGGAAACGTGGCACTTTCTGTTTTAATGACAGCAGCAAGCACTTTATCAGCTGTGATCATGACCCCCTTTCTCACAGCTAAACTTGCCGGTCAGTATGTTGCAGTGGATGCTGCTGGGCTTCTATTCTCAACACTGCAGGTTGTGCTTCTCCCTGTTTTGGCCGGTGCATTTCTGAATCAGTACTTCCAAGGCCTGGTTAAATTTGTATCCCCTTTGATGCCACCCATTGCTGTGGCAACTGTAGCTGTTCTTTGTGGGAATGCAATTGCCCAGAGTTCTTCAGCAATCCTTACGTCTGGTAAACAAGTGGTGCTAGCTGCCGCTCTTCTTCATGCAAGTGGATTTTTCTTCGGTTACATCCTTTCAAGGATGCTTGGGATTGATGTCGCATCATCAAGGACTATCTCCATCGAGGTTGGCATGCAGAATTCGGTGCTTGGAGTTGTTCTAGCCAGTCAGCACTTCGGAAACCCTCTAACTGCGGTACCATGTGCTGTTTCCAGCGTTTGTCATTCAATCTTGGGTAGTGTCTTGGCAGGATTCTGGAGACAGACTGGGCCAACCCAGAAGCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

415

Amino Acids

43.83

Weight (kDa)

9.05

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	134 - 405	7.4e-16	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	142 - 318	1.5e-40	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78560
fragaria_vesca	FvH4_3g17590 FvH4_3g17590 FvH4_3g17590 FvH4_3g17590
malus_domestica	MD03G1250900.v1.1 MD03G1251000.v1.1 MD03G1251100.v1.1 MD03G1251200.v1.1 MD11G1271200.v1.1
prunus_persica	Prupe.4G155400_v2.0.a1
pyrus_communis	pycom03g19860 pycom11g23980 pycom11g24010 pycom11g24030
rosa_chinensis	RchiOBHm_Chr5g0029301
rosa_laevigata	RLG00000033151
rosa_multiflora	Rmu_ssc0000405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050710
rosa_rugosa	Rorug05G0112900
rosa_samantha	Rh2BG192800 Rh5AG205100 Rh5AG205200 Rh5BG203700 Rh5CG225100 Rh5DG207300
rosa_wichuraiana	Rw5G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	793
Acc65I	GGTACC	1 cut(s)	1150
AccB1I	GGYRCC	2 cut(s)	363, 1150
AccB7I	CCANNNNNTGG	1 cut(s)	859
AccBSI	CCGCTC	2 cut(s)	244, 989
AccI	GTMKAC	1 cut(s)	332
AccII	CGCG	1 cut(s)	488
AciI	CCGC	3 cut(s)	242, 987, 1148
AclWI	GGATC	1 cut(s)	126
AcoI	YGGCCR	1 cut(s)	825
AcsI	RAATTY	3 cut(s)	577, 866, 1093
AcuI	CTGAAG	3 cut(s)	25, 512, 930
AcvI	CACGTG	1 cut(s)	665
AfaI	GTAC	4 cut(s)	418, 533, 848, 1152
AfiI	CCNNNNNNNGG	4 cut(s)	399, 551, 823, 859
AgsI	TTSAA	5 cut(s)	311, 397, 577, 1032, 1182
AjnI	CCWGG	3 cut(s)	287, 625, 858
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AluBI	AGCT	7 cut(s)	239, 571, 599, 716, 743, 911, 983
AluI	AGCT	7 cut(s)	239, 571, 599, 716, 743, 911, 983
Alw26I	GTCTC	1 cut(s)	1207
AlwI	GGATC	1 cut(s)	126
AoxI	GGCC	3 cut(s)	825, 856, 1223
ApeKI	GCWGC	5 cut(s)	596, 621, 698, 776, 983
ApoI	RAATTY	3 cut(s)	577, 866, 1093
Asp718I	GGTACC	1 cut(s)	1150
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	1223
AsuHPI	GGTGA	2 cut(s)	14, 550
AsuNHI	GCTAGC	1 cut(s)	979
BaeI	ACNNNNGTAYC	2 cut(s)	1134, 1167
BanI	GGYRCC	2 cut(s)	363, 1150
BanII	GRGCYC	1 cut(s)	378
BbrPI	CACGTG	1 cut(s)	665
BbvI	GCAGC	5 cut(s)	608, 608, 710, 763, 970
BccI	CCATC	4 cut(s)	364, 428, 592, 1082
BciT130I	CCWGG	3 cut(s)	289, 627, 860
BciVI	GTATCC	1 cut(s)	883
BclI	TGATCA	1 cut(s)	720
BcoDI	GTCTC	1 cut(s)	1207
BfaI	CTAG	4 cut(s)	114, 236, 980, 1115
BfmI	CTRYAG	2 cut(s)	800, 906
BfuAI	ACCTGC	1 cut(s)	793
BfuI	GTATCC	1 cut(s)	883
BisI	GCNGC	6 cut(s)	597, 622, 699, 777, 984, 987
BlsI	GCNGC	6 cut(s)	598, 623, 700, 778, 985, 988
BmcAI	AGTACT	2 cut(s)	533, 848
Bme1390I	CCNGG	3 cut(s)	289, 627, 860
BmgT120I	GGNCC	1 cut(s)	1223
BmiI	GGNNCC	2 cut(s)	365, 1152
BmrFI	CCNGG	3 cut(s)	289, 627, 860
BmrI	ACTGGG	1 cut(s)	1230
BmsI	GCATC	6 cut(s)	187, 531, 763, 873, 1026, 1064
BmtI	GCTAGC	1 cut(s)	983
BmuI	ACTGGG	1 cut(s)	1230
BpmI	CTGGAG	1 cut(s)	1231
BsaAI	YACGTR	1 cut(s)	665
BsaJI	CCNNGG	4 cut(s)	25, 501, 625, 853
Bsc4I	CCNNNNNNNGG	4 cut(s)	399, 551, 823, 859
Bse118I	RCCGGY	3 cut(s)	515, 752, 827
Bse1I	ACTGG	3 cut(s)	318, 1119, 1225
Bse3DI	GCAATG	2 cut(s)	136, 891
BseBI	CCWGG	3 cut(s)	289, 627, 860
BseDI	CCNNGG	4 cut(s)	25, 501, 625, 853
BseGI	GGATG	3 cut(s)	778, 1023, 1041
BseLI	CCNNNNNNNGG	4 cut(s)	399, 551, 823, 859
BseMI	GCAATG	2 cut(s)	136, 891
BseNI	ACTGG	3 cut(s)	318, 1119, 1225
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	5 cut(s)	608, 608, 710, 763, 970
BseYI	CCCAGC	2 cut(s)	161, 779
Bsh1236I	CGCG	1 cut(s)	488
BshFI	GGCC	3 cut(s)	827, 858, 1225
BshNI	GGYRCC	2 cut(s)	363, 1150
BsiSI	CCGG	3 cut(s)	516, 753, 828
BslI	CCNNNNNNNGG	4 cut(s)	399, 551, 823, 859
BsmAI	GTCTC	1 cut(s)	1207
BsmI	GAATGC	1 cut(s)	931
BsnI	GGCC	3 cut(s)	827, 858, 1225
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	131, 720
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	3 cut(s)	242, 987, 1148
BspANI	GGCC	3 cut(s)	827, 858, 1225
BspFNI	CGCG	1 cut(s)	488
BspHI	TCATGA	1 cut(s)	723
BspLI	GGNNCC	2 cut(s)	365, 1152
BspMAI	CTGCAG	1 cut(s)	804
BspMI	ACCTGC	1 cut(s)	793
BspOI	GCTAGC	1 cut(s)	983
BspPI	GGATC	1 cut(s)	126
BspQI	GCTCTTC	1 cut(s)	996
BspT107I	GGYRCC	2 cut(s)	363, 1150
BsrBI	CCGCTC	2 cut(s)	244, 989
BsrDI	GCAATG	2 cut(s)	136, 891
BsrFI	RCCGGY	3 cut(s)	515, 752, 827
BsrI	ACTGG	3 cut(s)	318, 1119, 1225
BssAI	RCCGGY	3 cut(s)	515, 752, 827
BssECI	CCNNGG	4 cut(s)	25, 501, 625, 853
BssMI	GATC	2 cut(s)	131, 720
BssT1I	CCWWGG	3 cut(s)	25, 501, 853
Bst2UI	CCWGG	3 cut(s)	289, 627, 860
Bst4CI	ACNGT	2 cut(s)	416, 907
Bst6I	CTCTTC	1 cut(s)	996
BstAPI	GCANNNNNTGC	2 cut(s)	773, 808
BstBAI	YACGTR	1 cut(s)	665
BstC8I	GCNNGC	5 cut(s)	513, 569, 703, 981, 1088
BstDEI	CTNAG	2 cut(s)	128, 424
BstDSI	CCRYGG	1 cut(s)	25
BstENI	CCTNNNNNAGG	1 cut(s)	549
BstF5I	GGATG	3 cut(s)	778, 1023, 1041
BstFNI	CGCG	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	2 cut(s)	134, 723
BstMAI	GTCTC	1 cut(s)	1207
BstMBI	GATC	2 cut(s)	131, 720
BstMWI	GCNNNNNNNGC	4 cut(s)	749, 773, 808, 908
BstNI	CCWGG	3 cut(s)	289, 627, 860
BstNSI	RCATGY	1 cut(s)	1090
BstSCI	CCNGG	3 cut(s)	287, 625, 858
BstSFI	CTRYAG	2 cut(s)	800, 906
BstUI	CGCG	1 cut(s)	488
BstV1I	GCAGC	5 cut(s)	608, 608, 710, 763, 970
BstX2I	RGATCY	1 cut(s)	131
BstXI	CCANNNNNNTGG	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	131
BsuI	GTATCC	1 cut(s)	883
BsuRI	GGCC	3 cut(s)	827, 858, 1225
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	3 cut(s)	778, 1023, 1041
BtsI	GCAGTG	2 cut(s)	774, 797
BtsIMutI	CAGTG	3 cut(s)	434, 774, 797
BveI	ACCTGC	1 cut(s)	793
Cac8I	GCNNGC	5 cut(s)	513, 569, 703, 981, 1088
CciI	TCATGA	1 cut(s)	723
CfoI	GCGC	1 cut(s)	488
Cfr10I	RCCGGY	3 cut(s)	515, 752, 827
Cfr13I	GGNCC	1 cut(s)	1223
Csp6I	GTAC	4 cut(s)	417, 532, 847, 1151
CviQI	GTAC	4 cut(s)	417, 532, 847, 1151
DdeI	CTNAG	2 cut(s)	128, 424
DpnI	GATC	2 cut(s)	133, 722
DpnII	GATC	2 cut(s)	131, 720
EaeI	YGGCCR	1 cut(s)	825
Eam1104I	CTCTTC	1 cut(s)	996
EarI	CTCTTC	1 cut(s)	996
Eco130I	CCWWGG	3 cut(s)	25, 501, 853
Eco147I	AGGCCT	1 cut(s)	858
Eco24I	GRGCYC	1 cut(s)	378
Eco57I	CTGAAG	3 cut(s)	25, 512, 930
Eco72I	CACGTG	1 cut(s)	665
EcoNI	CCTNNNNNAGG	1 cut(s)	549
EcoRI	GAATTC	1 cut(s)	1093
EcoRII	CCWGG	3 cut(s)	287, 625, 858
EcoT14I	CCWWGG	3 cut(s)	25, 501, 853
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	3 cut(s)	25, 501, 853
FbaI	TGATCA	1 cut(s)	720
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	6 cut(s)	597, 622, 699, 777, 984, 987
FokI	GGATG	3 cut(s)	785, 1010, 1048
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	6 cut(s)	597, 622, 699, 777, 984, 987
FspBI	CTAG	4 cut(s)	114, 236, 980, 1115
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	6 cut(s)	597, 622, 699, 777, 984, 987
GsaI	CCCAGC	2 cut(s)	165, 783
GsuI	CTGGAG	1 cut(s)	1231
HaeIII	GGCC	3 cut(s)	827, 858, 1225
HapII	CCGG	3 cut(s)	516, 753, 828
HhaI	GCGC	1 cut(s)	488
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HincII	GTYRAC	2 cut(s)	119, 333
HindII	GTYRAC	2 cut(s)	119, 333
HindIII	AAGCTT	1 cut(s)	569
HinfI	GANTC	5 cut(s)	45, 190, 323, 841, 1206
HpaII	CCGG	3 cut(s)	516, 753, 828
HphI	GGTGA	2 cut(s)	14, 550
Hpy166II	GTNNAC	3 cut(s)	119, 333, 968
Hpy188I	TCNGA	4 cut(s)	44, 345, 840, 1133
Hpy188III	TCNNGA	3 cut(s)	552, 724, 1210
Hpy8I	GTNNAC	3 cut(s)	119, 333, 968
Hpy99I	CGWCG	2 cut(s)	265, 476
HpyAV	CCTTC	4 cut(s)	108, 120, 403, 488
HpyCH4III	ACNGT	2 cut(s)	416, 907
HpyCH4IV	ACGT	3 cut(s)	664, 672, 959
HpyF10VI	GCNNNNNNNGC	4 cut(s)	749, 773, 808, 908
HpyF3I	CTNAG	2 cut(s)	128, 424
HpySE526I	ACGT	3 cut(s)	664, 672, 959
HspAI	GCGC	1 cut(s)	486
KpnI	GGTACC	1 cut(s)	1154
Ksp22I	TGATCA	1 cut(s)	720
Kzo9I	GATC	2 cut(s)	131, 720
LguI	GCTCTTC	1 cut(s)	996
LmnI	GCTCC	2 cut(s)	244, 249
Lsp1109I	GCAGC	5 cut(s)	608, 608, 710, 763, 970
LweI	GCATC	6 cut(s)	187, 531, 763, 873, 1026, 1064
MaeI	CTAG	4 cut(s)	114, 236, 980, 1115
MaeII	ACGT	3 cut(s)	664, 672, 959
MaeIII	GTNAC	5 cut(s)	9, 403, 641, 649, 1019
MalI	GATC	2 cut(s)	133, 722
MbiI	CCGCTC	2 cut(s)	244, 989
MboI	GATC	2 cut(s)	131, 720
MboII	GAAGA	5 cut(s)	518, 936, 983, 986, 1006
MfeI	CAATTG	2 cut(s)	397, 930
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	7 cut(s)	30, 155, 397, 577, 866, 930, 1093
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	6 cut(s)	112, 115, 196, 473, 1072, 1149
MseI	TTAA	2 cut(s)	689, 864
MslI	CAYNNNNRTG	3 cut(s)	455, 896, 1002
MspA1I	CMGCKG	2 cut(s)	599, 716
MspI	CCGG	3 cut(s)	516, 753, 828
MspR9I	CCNGG	3 cut(s)	289, 627, 860
MunI	CAATTG	2 cut(s)	397, 930
Mva1269I	GAATGC	1 cut(s)	931
MvaI	CCWGG	3 cut(s)	289, 627, 860
MvnI	CGCG	1 cut(s)	488
MwoI	GCNNNNNNNGC	4 cut(s)	749, 773, 808, 908
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	2 cut(s)	131, 720
NheI	GCTAGC	1 cut(s)	979
NlaIV	GGNNCC	2 cut(s)	365, 1152
NmeAIII	GCCGAG	1 cut(s)	426
NmuCI	GTSAC	2 cut(s)	9, 403
NspI	RCATGY	1 cut(s)	1090
PaeI	GCATGC	1 cut(s)	1090
PagI	TCATGA	1 cut(s)	723
PceI	AGGCCT	1 cut(s)	858
PciSI	GCTCTTC	1 cut(s)	996
PctI	GAATGC	1 cut(s)	931
PfeI	GAWTC	4 cut(s)	45, 190, 841, 1206
PflMI	CCANNNNNTGG	1 cut(s)	859
PkrI	GCNGC	6 cut(s)	598, 623, 700, 778, 985, 988
PleI	GAGTC	1 cut(s)	331
PmaCI	CACGTG	1 cut(s)	665
PmlI	CACGTG	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	665
Psp6I	CCWGG	3 cut(s)	287, 625, 858
PspCI	CACGTG	1 cut(s)	665
PspFI	CCCAGC	2 cut(s)	161, 779
PspGI	CCWGG	3 cut(s)	287, 625, 858
PspN4I	GGNNCC	2 cut(s)	365, 1152
PspPI	GGNCC	1 cut(s)	1223
PstI	CTGCAG	1 cut(s)	804
PsuI	RGATCY	1 cut(s)	131
PvuII	CAGCTG	2 cut(s)	599, 716
RsaI	GTAC	4 cut(s)	418, 533, 848, 1152
RsaNI	GTAC	4 cut(s)	417, 532, 847, 1151
RseI	CAYNNNNRTG	3 cut(s)	455, 896, 1002
SalI	GTCGAC	1 cut(s)	331
SapI	GCTCTTC	1 cut(s)	996
SaqAI	TTAA	2 cut(s)	689, 864
SatI	GCNGC	6 cut(s)	597, 622, 699, 777, 984, 987
Sau3AI	GATC	2 cut(s)	131, 720
Sau96I	GGNCC	1 cut(s)	1223
ScaI	AGTACT	2 cut(s)	533, 848
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	3 cut(s)	289, 627, 860
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	6 cut(s)	187, 531, 763, 873, 1026, 1064
SfcI	CTRYAG	2 cut(s)	800, 906
SmiMI	CAYNNNNRTG	3 cut(s)	455, 896, 1002
SphI	GCATGC	1 cut(s)	1090
Sse9I	AATT	7 cut(s)	30, 155, 397, 577, 866, 930, 1093
SseBI	AGGCCT	1 cut(s)	858
SsiI	CCGC	3 cut(s)	242, 987, 1148
SspMI	CTAG	4 cut(s)	114, 236, 980, 1115
StuI	AGGCCT	1 cut(s)	858
StyD4I	CCNGG	3 cut(s)	287, 625, 858
StyI	CCWWGG	3 cut(s)	25, 501, 853
TaaI	ACNGT	2 cut(s)	416, 907
TaiI	ACGT	3 cut(s)	667, 675, 962
TaqI	TCGA	5 cut(s)	188, 263, 332, 471, 1077
TasI	AATT	7 cut(s)	30, 155, 397, 577, 866, 930, 1093
TatI	WGTACW	2 cut(s)	531, 846
TauI	GCSGC	1 cut(s)	989
TfiI	GAWTC	4 cut(s)	45, 190, 841, 1206
Tru1I	TTAA	2 cut(s)	689, 864
Tru9I	TTAA	2 cut(s)	689, 864
TscAI	CASTG	3 cut(s)	441, 774, 804
TseFI	GTSAC	2 cut(s)	9, 403
TseI	GCWGC	5 cut(s)	596, 621, 698, 776, 983
Tsp45I	GTSAC	2 cut(s)	9, 403
TspDTI	ATGAA	2 cut(s)	233, 986
TspRI	CASTG	3 cut(s)	441, 774, 804
Van91I	CCANNNNNTGG	1 cut(s)	859
XagI	CCTNNNNNAGG	1 cut(s)	549
XapI	RAATTY	3 cut(s)	577, 866, 1093
XceI	RCATGY	1 cut(s)	1090
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	332
XspI	CTAG	4 cut(s)	114, 236, 980, 1115
ZrmI	AGTACT	2 cut(s)	533, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.