Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006339

Physical Location & Seq

Genomic Coordinates Reverse (-)

8897293 .. 8900670

Gene Structure 3378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G155400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGCGGTCGTCACTCTCACATCCCCATGGAAATACAGGCTTCAAATTCCATTCAAACCCCATTTCTAACCAGTCACCACTAACAGCTATATCATTCCCATTCTCTCACTACACCAAGACATCTCCTTCCCCATCTGCTTCTATTCAACTCACTCTAAGATCTCAATATGACTTACGAGCACAATTTCCTAGCAAACCCACATGGCTTCTACCCTCAGTTTCCTTTCCACCCACTTTAGCAACCAAGACTGGAAGATCACTGGCTCCACTTCAGTGTGGCATTTTGTCGAACAGCTGTAGCACCGACGATGGCAAGAGGAGTTTCAGGGATTGGGTTGAGGTGGTTGGTGAGGCCGTATCAACTGCATTTCCCATATGGGTTGCTTTGGGATGCCTGTTGGGGCTCATCAAGCCGAGTTCCTTCAATTGGGTCACACCCAACTTGACCATCTTAGGCATAACACTGACCATGCTTGGCATGGGCATGACCCTCACTTTCAACGACCTTCGTGGGGCGTTGGCCATGCCCAAGGAATTACTTGCTGGCTTTGTTCTTCAGTACTCGGTGATGCCTTTATCAGGATATGCTGTGAGCAAGCTTTTGAATTTGCCGTCCTATTATGCAGCTGGTTTGATATTGGTTGGTTGCTGCCCTGGTGGAACAGCAAGTAACATAGTAACTTATATTGCACGTGGAAATGTGGCACTTTCGGTTTTAATGACAGCAGCGAGCACCTTATCAGCCGTGATCATGACCCCCTTTCTCACTGCCAAACTTGCTGGTCAATATGTTGCAGTAGATGCAGCTGGGCTATTATTCTCAACATTGCAGGTTGTGCTTCTCCCTGTATTGGCGGGTGCATTTCTGAATCAATATTTCCAAGGCCTGGTTAAATTTGTGTCCCCCTTGATGCCACCCATTGCTGTGGGAACTGTAGCTGTTCTTTGTGGGAATGCAATTGCCCAGAGTTCTTCTGCAATCCTTATGTCTGGTAAACAAGTGGTGCTAGCTGCCGCTCTTCTTCATGCATCTGGATTTTTCTTTGGTTACATACTTTCAAGGATACTTGGGATTGATGTGTCATCATCAAGGACTATCTCCATCGAGGTTGGCATGCAGAATTCGGTGCTTGGAGTTGTTCTAGCCAGCCAGCACTTCGGAAATCCTCTAACTGCGGTACCATGCGCTGTTTCCAGCGTTTGTCATTCAATCCTTGGTAGTGCCTTGGCAGGAATTTGGAGACAGAGTGTGCCAACGCAAAAGCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

424

Amino Acids

44.48

Weight (kDa)

9.39

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78560
fragaria_vesca	FvH4_3g17590 FvH4_3g17590 FvH4_3g17590 FvH4_3g17590
malus_domestica	MD03G1250900.v1.1 MD03G1251000.v1.1 MD03G1251100.v1.1 MD03G1251200.v1.1 MD11G1271200.v1.1
prunus_persica	Prupe.4G155400_v2.0.a1
pyrus_communis	pycom03g19860 pycom11g23980 pycom11g24010 pycom11g24030
rosa_chinensis	RchiOBHm_Chr5g0029301
rosa_laevigata	RLG00000033151
rosa_multiflora	Rmu_ssc0000405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050710
rosa_rugosa	Rorug05G0112900
rosa_samantha	Rh2BG192800 Rh5AG205100 Rh5AG205200 Rh5BG203700 Rh5CG225100 Rh5DG207300
rosa_wichuraiana	Rw5G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	820
Acc65I	GGTACC	1 cut(s)	1177
AccB1I	GGYRCC	1 cut(s)	1177
AccB7I	CCANNNNNTGG	1 cut(s)	886
AccBSI	CCGCTC	1 cut(s)	1016
AciI	CCGC	4 cut(s)	4, 854, 1014, 1175
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	5 cut(s)	44, 604, 893, 1120, 1233
AcuI	CTGAAG	2 cut(s)	254, 539
AcvI	CACGTG	1 cut(s)	692
AfaI	GTAC	2 cut(s)	560, 1179
AfiI	CCNNNNNNNGG	5 cut(s)	426, 511, 578, 850, 886
AgsI	TTSAA	8 cut(s)	43, 54, 146, 424, 499, 604, 1059, 1209
AjnI	CCWGG	2 cut(s)	652, 885
AleI	CACNNNNGTG	1 cut(s)	271
AluBI	AGCT	7 cut(s)	86, 294, 598, 626, 806, 938, 1010
AluI	AGCT	7 cut(s)	86, 294, 598, 626, 806, 938, 1010
Alw21I	GWGCWC	2 cut(s)	181, 734
Alw26I	GTCTC	1 cut(s)	1234
AoxI	GGCC	3 cut(s)	351, 519, 883
ApeKI	GCWGC	5 cut(s)	623, 648, 725, 803, 1010
ApoI	RAATTY	5 cut(s)	44, 604, 893, 1120, 1233
Asp718I	GGTACC	1 cut(s)	1177
AspLEI	GCGC	1 cut(s)	1187
AsuHPI	GGTGA	3 cut(s)	66, 359, 577
AsuNHI	GCTAGC	1 cut(s)	1006
BaeI	ACNNNNGTAYC	2 cut(s)	1161, 1194
BalI	TGGCCA	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	1177
BanII	GRGCYC	1 cut(s)	405
BbrPI	CACGTG	1 cut(s)	692
Bbv12I	GWGCWC	2 cut(s)	181, 734
BbvI	GCAGC	5 cut(s)	635, 635, 737, 815, 997
BccI	CCATC	4 cut(s)	139, 302, 455, 1109
BceAI	ACGGC	3 cut(s)	338, 595, 728
BciT130I	CCWGG	2 cut(s)	654, 887
BciVI	GTATCC	1 cut(s)	1056
BclI	TGATCA	1 cut(s)	747
BcoDI	GTCTC	1 cut(s)	1234
BfaI	CTAG	3 cut(s)	189, 1007, 1142
BfmI	CTRYAG	2 cut(s)	295, 933
BfuAI	ACCTGC	1 cut(s)	820
BfuI	GTATCC	1 cut(s)	1056
BglII	AGATCT	1 cut(s)	158
BisI	GCNGC	6 cut(s)	624, 649, 726, 804, 1011, 1014
BlsI	GCNGC	6 cut(s)	625, 650, 727, 805, 1012, 1015
BmcAI	AGTACT	1 cut(s)	560
Bme1390I	CCNGG	2 cut(s)	654, 887
BmiI	GGNNCC	2 cut(s)	264, 1179
BmrFI	CCNGG	2 cut(s)	654, 887
BmsI	GCATC	5 cut(s)	380, 558, 790, 900, 1037
BmtI	GCTAGC	1 cut(s)	1010
BsaAI	YACGTR	1 cut(s)	692
BsaJI	CCNNGG	6 cut(s)	25, 528, 652, 880, 1213, 1224
BsaXI	ACNNNNNCTCC	2 cut(s)	1231, 1261
Bsc4I	CCNNNNNNNGG	5 cut(s)	426, 511, 578, 850, 886
Bse1I	ACTGG	3 cut(s)	70, 253, 264
Bse3DI	GCAATG	2 cut(s)	824, 918
BseBI	CCWGG	2 cut(s)	654, 887
BseDI	CCNNGG	6 cut(s)	25, 528, 652, 880, 1213, 1224
BseGI	GGATG	2 cut(s)	19, 395
BseLI	CCNNNNNNNGG	5 cut(s)	426, 511, 578, 850, 886
BseMI	GCAATG	2 cut(s)	824, 918
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	3 cut(s)	70, 253, 264
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	5 cut(s)	635, 635, 737, 815, 997
BseYI	CCCAGC	1 cut(s)	806
Bsh1285I	CGRYCG	1 cut(s)	8
BshFI	GGCC	3 cut(s)	353, 521, 885
BshNI	GGYRCC	1 cut(s)	1177
BsiEI	CGRYCG	1 cut(s)	8
BsiHKAI	GWGCWC	2 cut(s)	181, 734
BslFI	GGGAC	1 cut(s)	886
BslI	CCNNNNNNNGG	5 cut(s)	426, 511, 578, 850, 886
BsmAI	GTCTC	1 cut(s)	1234
BsmFI	GGGAC	1 cut(s)	886
BsmI	GAATGC	1 cut(s)	958
BsnI	GGCC	3 cut(s)	353, 521, 885
Bsp1286I	GDGCHC	3 cut(s)	181, 405, 734
Bsp143I	GATC	3 cut(s)	158, 254, 747
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	4 cut(s)	4, 854, 1014, 1175
BspANI	GGCC	3 cut(s)	353, 521, 885
BspCNI	CTCAG	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	750
BspLI	GGNNCC	2 cut(s)	264, 1179
BspMI	ACCTGC	1 cut(s)	820
BspOI	GCTAGC	1 cut(s)	1010
BspQI	GCTCTTC	1 cut(s)	1023
BspT107I	GGYRCC	1 cut(s)	1177
BsrBI	CCGCTC	1 cut(s)	1016
BsrDI	GCAATG	2 cut(s)	824, 918
BsrI	ACTGG	3 cut(s)	70, 253, 264
BssECI	CCNNGG	6 cut(s)	25, 528, 652, 880, 1213, 1224
BssMI	GATC	3 cut(s)	158, 254, 747
BssT1I	CCWWGG	5 cut(s)	25, 528, 880, 1213, 1224
Bst2UI	CCWGG	2 cut(s)	654, 887
Bst4CI	ACNGT	1 cut(s)	934
Bst6I	CTCTTC	1 cut(s)	1023
BstAPI	GCANNNNNTGC	2 cut(s)	800, 835
BstBAI	YACGTR	1 cut(s)	692
BstC8I	GCNNGC	7 cut(s)	544, 596, 730, 1008, 1115, 1147, 1151
BstDEI	CTNAG	3 cut(s)	155, 214, 451
BstDSI	CCRYGG	1 cut(s)	25
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstF5I	GGATG	2 cut(s)	19, 395
BstHHI	GCGC	1 cut(s)	1187
BstKTI	GATC	3 cut(s)	161, 257, 750
BstMAI	GTCTC	1 cut(s)	1234
BstMBI	GATC	3 cut(s)	158, 254, 747
BstMCI	CGRYCG	1 cut(s)	8
BstMWI	GCNNNNNNNGC	4 cut(s)	409, 776, 800, 835
BstNI	CCWGG	2 cut(s)	654, 887
BstNSI	RCATGY	1 cut(s)	1117
BstSCI	CCNGG	2 cut(s)	652, 885
BstSFI	CTRYAG	2 cut(s)	295, 933
BstV1I	GCAGC	5 cut(s)	635, 635, 737, 815, 997
BstX2I	RGATCY	1 cut(s)	158
BstXI	CCANNNNNNTGG	1 cut(s)	925
BstYI	RGATCY	1 cut(s)	158
BsuI	GTATCC	1 cut(s)	1056
BsuRI	GGCC	3 cut(s)	353, 521, 885
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	19, 395
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	4 cut(s)	257, 278, 461, 765
BveI	ACCTGC	1 cut(s)	820
Cac8I	GCNNGC	7 cut(s)	544, 596, 730, 1008, 1115, 1147, 1151
CciI	TCATGA	1 cut(s)	750
CfoI	GCGC	1 cut(s)	1187
Csp6I	GTAC	2 cut(s)	559, 1178
CviQI	GTAC	2 cut(s)	559, 1178
DdeI	CTNAG	3 cut(s)	155, 214, 451
DpnI	GATC	3 cut(s)	160, 256, 749
DpnII	GATC	3 cut(s)	158, 254, 747
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	1023
EarI	CTCTTC	1 cut(s)	1023
Eco130I	CCWWGG	5 cut(s)	25, 528, 880, 1213, 1224
Eco147I	AGGCCT	1 cut(s)	885
Eco24I	GRGCYC	1 cut(s)	405
Eco57I	CTGAAG	2 cut(s)	254, 539
Eco72I	CACGTG	1 cut(s)	692
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoRI	GAATTC	1 cut(s)	1120
EcoRII	CCWGG	2 cut(s)	652, 885
EcoT14I	CCWWGG	5 cut(s)	25, 528, 880, 1213, 1224
EcoT22I	ATGCAT	1 cut(s)	1030
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	5 cut(s)	25, 528, 880, 1213, 1224
FaqI	GGGAC	1 cut(s)	886
FauI	CCCGC	1 cut(s)	847
FauNDI	CATATG	1 cut(s)	374
FbaI	TGATCA	1 cut(s)	747
Fnu4HI	GCNGC	6 cut(s)	624, 649, 726, 804, 1011, 1014
FokI	GGATG	2 cut(s)	6, 402
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	6 cut(s)	624, 649, 726, 804, 1011, 1014
FspBI	CTAG	3 cut(s)	189, 1007, 1142
GlaI	GCGC	1 cut(s)	1186
GluI	GCNGC	6 cut(s)	624, 649, 726, 804, 1011, 1014
GsaI	CCCAGC	1 cut(s)	810
HaeIII	GGCC	3 cut(s)	353, 521, 885
HhaI	GCGC	1 cut(s)	1187
Hin6I	GCGC	1 cut(s)	1185
HinP1I	GCGC	1 cut(s)	1185
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	1 cut(s)	868
HphI	GGTGA	3 cut(s)	66, 359, 577
Hpy166II	GTNNAC	1 cut(s)	995
Hpy188I	TCNGA	2 cut(s)	867, 1160
Hpy188III	TCNNGA	3 cut(s)	579, 751, 1032
Hpy8I	GTNNAC	1 cut(s)	995
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	3 cut(s)	135, 430, 515
HpyCH4III	ACNGT	1 cut(s)	934
HpyCH4IV	ACGT	1 cut(s)	691
HpyF10VI	GCNNNNNNNGC	4 cut(s)	409, 776, 800, 835
HpyF3I	CTNAG	3 cut(s)	155, 214, 451
HpySE526I	ACGT	1 cut(s)	691
HspAI	GCGC	1 cut(s)	1185
KpnI	GGTACC	1 cut(s)	1181
Ksp22I	TGATCA	1 cut(s)	747
Kzo9I	GATC	3 cut(s)	158, 254, 747
LguI	GCTCTTC	1 cut(s)	1023
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	5 cut(s)	635, 635, 737, 815, 997
LweI	GCATC	5 cut(s)	380, 558, 790, 900, 1037
MaeI	CTAG	3 cut(s)	189, 1007, 1142
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	6 cut(s)	9, 72, 430, 668, 676, 1046
MalI	GATC	3 cut(s)	160, 256, 749
MbiI	CCGCTC	1 cut(s)	1016
MboI	GATC	3 cut(s)	158, 254, 747
MboII	GAAGA	5 cut(s)	264, 545, 963, 1010, 1013
MfeI	CAATTG	2 cut(s)	424, 957
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	3 cut(s)	181, 405, 734
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	9 cut(s)	44, 182, 424, 533, 604, 893, 957, 1120, 1233
MluNI	TGGCCA	1 cut(s)	521
MnlI	CCTC	7 cut(s)	223, 309, 331, 343, 500, 1099, 1176
Mox20I	TGGCCA	1 cut(s)	521
Mph1103I	ATGCAT	1 cut(s)	1030
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	2 cut(s)	716, 891
MslI	CAYNNNNRTG	4 cut(s)	24, 271, 482, 923
Msp20I	TGGCCA	1 cut(s)	521
MspA1I	CMGCKG	3 cut(s)	294, 626, 806
MspR9I	CCNGG	2 cut(s)	654, 887
MunI	CAATTG	2 cut(s)	424, 957
Mva1269I	GAATGC	1 cut(s)	958
MvaI	CCWGG	2 cut(s)	654, 887
MwoI	GCNNNNNNNGC	4 cut(s)	409, 776, 800, 835
NcoI	CCATGG	1 cut(s)	25
NdeI	CATATG	1 cut(s)	374
NdeII	GATC	3 cut(s)	158, 254, 747
NheI	GCTAGC	1 cut(s)	1006
NlaIV	GGNNCC	2 cut(s)	264, 1179
NmeAIII	GCCGAG	1 cut(s)	438
NmuCI	GTSAC	3 cut(s)	9, 72, 430
NsiI	ATGCAT	1 cut(s)	1030
NspI	RCATGY	1 cut(s)	1117
OliI	CACNNNNGTG	1 cut(s)	271
PaeI	GCATGC	1 cut(s)	1117
PagI	TCATGA	1 cut(s)	750
PceI	AGGCCT	1 cut(s)	885
PciSI	GCTCTTC	1 cut(s)	1023
PctI	GAATGC	1 cut(s)	958
PfeI	GAWTC	1 cut(s)	868
PflMI	CCANNNNNTGG	1 cut(s)	886
PkrI	GCNGC	6 cut(s)	625, 650, 727, 805, 1012, 1015
PmaCI	CACGTG	1 cut(s)	692
PmlI	CACGTG	1 cut(s)	692
Ppu21I	YACGTR	1 cut(s)	692
Psp6I	CCWGG	2 cut(s)	652, 885
PspCI	CACGTG	1 cut(s)	692
PspFI	CCCAGC	1 cut(s)	806
PspGI	CCWGG	2 cut(s)	652, 885
PspN4I	GGNNCC	2 cut(s)	264, 1179
PsuI	RGATCY	1 cut(s)	158
PvuII	CAGCTG	3 cut(s)	294, 626, 806
RsaI	GTAC	2 cut(s)	560, 1179
RsaNI	GTAC	2 cut(s)	559, 1178
RseI	CAYNNNNRTG	4 cut(s)	24, 271, 482, 923
SapI	GCTCTTC	1 cut(s)	1023
SaqAI	TTAA	2 cut(s)	716, 891
SatI	GCNGC	6 cut(s)	624, 649, 726, 804, 1011, 1014
Sau3AI	GATC	3 cut(s)	158, 254, 747
ScaI	AGTACT	1 cut(s)	560
ScrFI	CCNGG	2 cut(s)	654, 887
SduI	GDGCHC	3 cut(s)	181, 405, 734
SfaNI	GCATC	5 cut(s)	380, 558, 790, 900, 1037
SfcI	CTRYAG	2 cut(s)	295, 933
SmiMI	CAYNNNNRTG	4 cut(s)	24, 271, 482, 923
SphI	GCATGC	1 cut(s)	1117
Sse9I	AATT	9 cut(s)	44, 182, 424, 533, 604, 893, 957, 1120, 1233
SseBI	AGGCCT	1 cut(s)	885
SsiI	CCGC	4 cut(s)	4, 854, 1014, 1175
SspI	AATATT	1 cut(s)	875
SspMI	CTAG	3 cut(s)	189, 1007, 1142
StuI	AGGCCT	1 cut(s)	885
StyD4I	CCNGG	2 cut(s)	652, 885
StyI	CCWWGG	5 cut(s)	25, 528, 880, 1213, 1224
TaaI	ACNGT	1 cut(s)	934
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	2 cut(s)	287, 1104
TasI	AATT	9 cut(s)	44, 182, 424, 533, 604, 893, 957, 1120, 1233
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	1 cut(s)	1016
TfiI	GAWTC	1 cut(s)	868
Tru1I	TTAA	2 cut(s)	716, 891
Tru9I	TTAA	2 cut(s)	716, 891
TscAI	CASTG	4 cut(s)	264, 278, 468, 772
TseFI	GTSAC	3 cut(s)	9, 72, 430
TseI	GCWGC	5 cut(s)	623, 648, 725, 803, 1010
Tsp45I	GTSAC	3 cut(s)	9, 72, 430
TspDTI	ATGAA	1 cut(s)	1013
TspRI	CASTG	4 cut(s)	264, 278, 468, 772
Van91I	CCANNNNNTGG	1 cut(s)	886
XagI	CCTNNNNNAGG	1 cut(s)	576
XapI	RAATTY	5 cut(s)	44, 604, 893, 1120, 1233
XceI	RCATGY	1 cut(s)	1117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XspI	CTAG	3 cut(s)	189, 1007, 1142
ZrmI	AGTACT	1 cut(s)	560
Zsp2I	ATGCAT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.