Rh2BG192800

sodium metabolite cotransporter BASS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006339
Physical Location & Seq
Reverse (-)
17451529 .. 17454575
3047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG192800.1

Sequence Viewer

Length: 387 bp
ATGTCCTTAACCTCTTCACTGTCGACCGCCACCACCACCTCCGCACAAAGCTCCAAAACAAACCACCTCCAGTCCCCGAAGACACCCTGGACTTCCCCCTCACATGTGATGCCTTTATCAGGGTATTTTTTGAGCAAGCTTTTGAATCTGCCATCGCATTATGCAGCTGGTTTGATATTGGTTGCGTGCTACCCCGGTGGAACAACAAGTAACATTGTCACTTATATTGCACAGGATATGAAGCTCGGGAGTTTGCCAAGTACCCCAATTGTTGTTAATAATTGTGGCTCCCTGTTGCTTTTGGCTTATCTATCATTCAGGATATTGCTTGGTCACTTTGGTGACTCGACAAGAGTTAGTGCATACCGAATAAGTCAATTGGCCTGA

Protein Analysis

128

Amino Acids

13.62

Weight (kDa)

9.51

Isoelectric Point (pI)

55.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBF PF01758 36 - 78 1.4e-09 Sodium Bile acid symporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 23
AciI CCGC 2 cut(s) 27, 42
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 119
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 86
AleI CACNNNNGTG 1 cut(s) 339
AluBI AGCT 4 cut(s) 51, 139, 167, 244
AluI AGCT 4 cut(s) 51, 139, 167, 244
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 176
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 88
BcnI CCSGG 1 cut(s) 195
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 2 cut(s) 88, 195
BmeT110I CYCGRG 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 2 cut(s) 88, 195
BmsI GCATC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 86, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 86, 193
BseLI CCNNNNNNNGG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 70
BseXI GCAGC 1 cut(s) 176
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 383
BsiEI CGRYCG 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 245
BspACI CCGC 2 cut(s) 27, 42
BspANI GGCC 1 cut(s) 383
BspLI GGNNCC 1 cut(s) 289
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 86, 193
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 19
BstC8I GCNNGC 2 cut(s) 137, 187
BstENI CCTNNNNNAGG 1 cut(s) 117
BstMCI CGRYCG 1 cut(s) 27
BstNI CCWGG 1 cut(s) 88
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 86, 193
BstV1I GCAGC 1 cut(s) 176
BstV2I GAAGAC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 383
BtgZI GCGATG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 137, 187
Csp6I GTAC 1 cut(s) 261
CviAII CATG 1 cut(s) 104
CviJI RGCY 7 cut(s) 51, 139, 167, 244, 288, 305, 383
CviKI_1 RGCY 7 cut(s) 51, 139, 167, 244, 288, 305, 383
CviQI GTAC 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 245
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 86
FaeI CATG 1 cut(s) 107
FaiI YATR 5 cut(s) 105, 162, 225, 239, 364
FaqI GGGAC 1 cut(s) 58
FatI CATG 1 cut(s) 103
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 1 cut(s) 383
HapII CCGG 1 cut(s) 195
Hin1II CATG 1 cut(s) 107
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 2 cut(s) 145, 344
HpaII CCGG 1 cut(s) 195
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 24
Hpy188III TCNNGA 2 cut(s) 247, 319
Hpy8I GTNNAC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4V TGCA 3 cut(s) 164, 230, 362
Hsp92II CATG 1 cut(s) 107
LmnI GCTCC 2 cut(s) 56, 293
LpnPI CCDG 9 cut(s) 73, 83, 100, 105, 153, 208, 218, 304, 305
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 1 cut(s) 99
MaeIII GTNAC 4 cut(s) 209, 217, 332, 341
MboII GAAGA 2 cut(s) 6, 91
MfeI CAATTG 2 cut(s) 267, 377
MluCI AATT 3 cut(s) 267, 280, 377
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 4 cut(s) 22, 49, 77, 109
MseI TTAA 2 cut(s) 8, 276
MslI CAYNNNNRTG 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 88, 195
MunI CAATTG 2 cut(s) 267, 377
MvaI CCWGG 1 cut(s) 88
NciI CCSGG 1 cut(s) 195
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 3 cut(s) 217, 332, 341
NspI RCATGY 1 cut(s) 107
OliI CACNNNNGTG 1 cut(s) 339
PciI ACATGT 1 cut(s) 103
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PscI ACATGT 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 339
SalI GTCGAC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 8, 276
SatI GCNGC 1 cut(s) 165
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 2 cut(s) 88, 195
SetI ASST 7 cut(s) 14, 41, 53, 69, 141, 169, 246
SfaNI GCATC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 339
Sse9I AATT 3 cut(s) 267, 280, 377
SsiI CCGC 2 cut(s) 27, 42
StyD4I CCNGG 2 cut(s) 86, 193
TaaI ACNGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 23, 347
TasI AATT 3 cut(s) 267, 280, 377
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 2 cut(s) 8, 276
Tru9I TTAA 2 cut(s) 8, 276
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 3 cut(s) 217, 332, 341
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 3 cut(s) 217, 332, 341
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 1 cut(s) 24
XagI CCTNNNNNAGG 1 cut(s) 117
XceI RCATGY 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.