Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006339

Physical Location & Seq

Genomic Coordinates Reverse (-)

23046877 .. 23052608

Gene Structure 5732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG203700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1971 bp

ATGCAGTTGACAGTACTTTCATACTTCCATGGCAACAGAGCCTTCAGATTCCAAGTAAACCCAAACCCCATTTCGAACCAATCACCACTCAGAGCTACTAAACCATCACCTTCCTCCTCTATTCAACTCACACCAAGATCCCACTTTCACCCACAATCACCGTCTCTCCAAAATCCCAAATGGCCCCTCCCCTCAACTCCCTTCTCCTCCATCGCAGCCACCACAAAGAAGCCGCAGTCATCAGTGGCTCCAGTTCGTTCAGGCATTTCGTCGAACAGCTTCAGTGCCAATGGCAAAAGGAGCTTCAGGGACTGGGTTGAAGCGGTGAGTGAGGCTGTTTCCAATGCATTTCCGATATGGGTTGCTTTGGGGTGCCTCCTGGGCCTCATCAGTCCCGGTTCCTTCAACTGGGTCACACCCAAGCTCAATTTTTTCGGCTTAACGCTCACTATGCTTGGAATGGGTATGACCCTCACGTTCAATGACCTCAGGGACGCTTTGGCTATGCCCAAGGAGTTGTTCTCTGGCTTCTTTCTTCAGTACTCGGTGATGCCTTTATCAGGATATTTTGTGAGCAAGCTTTTGAATCTGCCATCGCATTATGCAGCTGGTTTGATATTGGTTGGGTGCTGCCCGGGTGGAACAGCAAGTAACATTGTCACTTATATTGCACGTGGAAATGTGGCACTTTCAGTGTTAATGACAGCAGCGAGCACTGTATCAGCCGTGATCATGACCCCTTTTCTCACGGCCAAACTTGCTGGTCAATATGTTGCAGTAGATGCACCTGGAATGTTATTCTCAACACTGCAGGTTGTGCTTCTTCCTGTGATGGCCGGTGCATTTCTGAATCAGTACTTCCAAGGTCTGGTTAAATTTGTCTCCCCCTTGATGCCACCCATTGCTGTGACAACAGTAGGTGTTCTTTGTGGGAACGCAATTGCCCAAAGTTCCTCCGCAATCCTCAAGTCTGGTCTACAAGTTGTGCTAGCTTCCTCCCTTCTGCATGCATCTGGATTTTTCTTTGGTTACGTGCTTTCAAGGTTACTTGGGCTTGATGTGGCATCATCAAGGACTATCTCAATTGAGGTTGGCATGCAGAATTCGGTGCTTGGAGTTGTTCTAGCTACTCAGCACTTTGGAAATCCTCTTACTGCAGTACCATGCGCTGTTTCCAGCGTTTGCCATTCAATCATCGTCACCGCACGATTTCTGAAAACGTTCGTTGAACCAGAATCGAGTCTTCTTGCACTTTTGGCTAGTCCTCGTGATTCTGCACCAGTGTTGATCACCTTTCAAAATAAGCTGTTGAAGTTGAGACCATTATGCAAGTTTGATCATGTGTTTGAAAAACCATTAGGATGTCTGATTGCTGATGATGTTTGCTTTCGAGATAAAGATGATGTATTTGAAGATGAAGCTCCGAGATTAACTAACCGCGCAGCTGCTTTACTTACAAAAGTTCACAATGTTAAATTTCTGTCTCTTGATGCTCGTCCTAAATGTTTGGAGGCTTGGTGTGTACCTGCTTTGGAAAACTTGGGCAAACTGGAGCTGGCTCTTCGGGACTGCTACAACTGGGAATTGCTAACAGAGTTGCTGAAGAGATCACCTAAGCTGGAATATCTTGGCTTGGAACATAGAAACACCAGTTTTGATGAATGGGAGATCCCAGAGTGTAAATGGAATCCACCTGAGTTTGTACCTATTTGTTTGTCATCAAGCCTTAAGACTGTCTGCGTAAAGGGATTCAAAGGAGGGCAGCATGAGATGGAAGTTGCAAAGTACTTGTTAAAATACGGTGAAGTTTTGAATGCCATGATTATTTCAACCAAGAATCGGTTCAATAGGCAGGATGGTCATCCATATAAAACGGAGGAAGAGCTATGCGAGGAATTTCGTGTGTGTCAAAAGGGTTCAAAGATTTGCCAAGTTAACTTAATTTATGATGCAGGTTCATATTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

656

Amino Acids

71.78

Weight (kDa)

8.81

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	143 - 396	2.6e-13	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	145 - 321	1e-39	Sodium Bile acid symporter family
FBD	PF08387	565 - 609	5e-13	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78560
fragaria_vesca	FvH4_3g17590 FvH4_3g17590 FvH4_3g17590 FvH4_3g17590
malus_domestica	MD03G1250900.v1.1 MD03G1251000.v1.1 MD03G1251100.v1.1 MD03G1251200.v1.1 MD11G1271200.v1.1
prunus_persica	Prupe.4G155400_v2.0.a1
pyrus_communis	pycom03g19860 pycom11g23980 pycom11g24010 pycom11g24030
rosa_chinensis	RchiOBHm_Chr5g0029301
rosa_laevigata	RLG00000033151
rosa_multiflora	Rmu_ssc0000405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050710
rosa_rugosa	Rorug05G0112900
rosa_samantha	Rh2BG192800 Rh5AG205100 Rh5AG205200 Rh5BG203700 Rh5CG225100 Rh5DG207300
rosa_wichuraiana	Rw5G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	802, 1534, 1943
AccB1I	GGYRCC	1 cut(s)	372
AccB7I	CCANNNNNTGG	1 cut(s)	868
AccI	GTMKAC	1 cut(s)	976
AccII	CGCG	1 cut(s)	1440
AciI	CCGC	5 cut(s)	233, 323, 957, 1203, 1438
AclI	AACGTT	1 cut(s)	1220
AclWI	GGATC	2 cut(s)	132, 1663
AcoI	YGGCCR	2 cut(s)	750, 834
AcsI	RAATTY	4 cut(s)	875, 1102, 1475, 1895
AcuI	CTGAAG	5 cut(s)	28, 265, 289, 521, 1622
AcvI	CACGTG	1 cut(s)	674
AfaI	GTAC	7 cut(s)	15, 542, 857, 1161, 1524, 1704, 1787
AfiI	CCNNNNNNNGG	4 cut(s)	408, 560, 868, 1839
AflII	CTTAAG	1 cut(s)	1727
AjnI	CCWGG	2 cut(s)	378, 787
AjuI	GAANNNNNNNTTGG	6 cut(s)	55, 87, 503, 535, 1826, 1858
Alw21I	GWGCWC	1 cut(s)	716
Alw26I	GTCTC	4 cut(s)	168, 886, 1312, 1488
AlwI	GGATC	2 cut(s)	132, 1663
AlwNI	CAGNNNCTG	1 cut(s)	312
Ama87I	CYCGRG	1 cut(s)	634
AoxI	GGCC	4 cut(s)	182, 382, 750, 834
ApeKI	GCWGC	7 cut(s)	215, 605, 630, 707, 1442, 1445, 1762
ApoI	RAATTY	4 cut(s)	875, 1102, 1475, 1895
Asp700I	GAANNNNTTC	3 cut(s)	278, 1220, 1841
AspLEI	GCGC	2 cut(s)	1169, 1442
AspS9I	GGNCC	2 cut(s)	183, 382
AsuC2I	CCSGG	3 cut(s)	396, 635, 636
AsuII	TTCGAA	1 cut(s)	74
AsuNHI	GCTAGC	1 cut(s)	988
AvaI	CYCGRG	1 cut(s)	634
AxyI	CCTNAGG	1 cut(s)	488
BaeI	ACNNNNGTAYC	2 cut(s)	1143, 1176
BanI	GGYRCC	1 cut(s)	372
BauI	CACGAG	1 cut(s)	1266
BbrPI	CACGTG	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	1235
Bbv12I	GWGCWC	1 cut(s)	716
BbvI	GCAGC	7 cut(s)	227, 617, 617, 719, 1432, 1454, 1774
BccI	CCATC	6 cut(s)	112, 218, 601, 826, 1765, 1850
BceAI	ACGGC	2 cut(s)	710, 765
BciT130I	CCWGG	2 cut(s)	380, 789
BclI	TGATCA	3 cut(s)	729, 1287, 1336
BcnI	CCSGG	3 cut(s)	396, 635, 636
BcoDI	GTCTC	4 cut(s)	168, 886, 1312, 1488
BfaI	CTAG	3 cut(s)	989, 1124, 1260
BfmI	CTRYAG	2 cut(s)	809, 1155
BfrI	CTTAAG	1 cut(s)	1727
BfuAI	ACCTGC	3 cut(s)	802, 1534, 1943
BglI	GCCNNNNNGGC	1 cut(s)	381
BisI	GCNGC	8 cut(s)	216, 233, 606, 631, 708, 1443, 1446, 1763
BlsI	GCNGC	8 cut(s)	217, 234, 607, 632, 709, 1444, 1447, 1764
BmcAI	AGTACT	4 cut(s)	15, 542, 857, 1787
Bme1390I	CCNGG	5 cut(s)	380, 396, 635, 636, 789
BmeT110I	CYCGRG	1 cut(s)	634
BmgT120I	GGNCC	2 cut(s)	183, 382
BmiI	GGNNCC	4 cut(s)	185, 249, 374, 400
BmrFI	CCNGG	5 cut(s)	380, 396, 635, 636, 789
BmrI	ACTGGG	3 cut(s)	322, 418, 1588
BmsI	GCATC	7 cut(s)	540, 772, 882, 1019, 1073, 1480, 1939
BmtI	GCTAGC	1 cut(s)	992
BmuI	ACTGGG	3 cut(s)	322, 418, 1588
BpiI	GAAGAC	1 cut(s)	1235
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
BpmI	CTGGAG	2 cut(s)	234, 1571
Bpu10I	CCTNAGC	1 cut(s)	1614
Bpu14I	TTCGAA	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	950
BpuMI	CCSGG	3 cut(s)	396, 635, 636
BsaAI	YACGTR	2 cut(s)	674, 1033
BsaBI	GATNNNNATC	1 cut(s)	1860
BsaI	GGTCTC	1 cut(s)	1312
BsaJI	CCNNGG	5 cut(s)	28, 379, 510, 634, 862
BsaXI	ACNNNNNCTCC	4 cut(s)	150, 180, 1502, 1532
Bsc4I	CCNNNNNNNGG	4 cut(s)	408, 560, 868, 1839
Bse118I	RCCGGY	1 cut(s)	836
Bse1I	ACTGG	7 cut(s)	251, 317, 413, 1280, 1554, 1583, 1650
Bse21I	CCTNAGG	1 cut(s)	488
Bse3DI	GCAATG	1 cut(s)	900
Bse8I	GATNNNNATC	1 cut(s)	1860
BseBI	CCWGG	2 cut(s)	380, 789
BseDI	CCNNGG	5 cut(s)	28, 379, 510, 634, 862
BseGI	GGATG	3 cut(s)	1367, 1861, 1861
BseJI	GATNNNNATC	1 cut(s)	1860
BseLI	CCNNNNNNNGG	4 cut(s)	408, 560, 868, 1839
BseMI	GCAATG	1 cut(s)	900
BseMII	CTCAG	4 cut(s)	103, 502, 1145, 1686
BseNI	ACTGG	7 cut(s)	251, 317, 413, 1280, 1554, 1583, 1650
BseRI	GAGGAG	2 cut(s)	106, 196
BseXI	GCAGC	7 cut(s)	227, 617, 617, 719, 1432, 1454, 1774
BsgI	GTGCAG	1 cut(s)	1260
Bsh1236I	CGCG	1 cut(s)	1440
BshFI	GGCC	4 cut(s)	184, 384, 752, 836
BshNI	GGYRCC	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	716
BsiHKCI	CYCGRG	1 cut(s)	634
BsiSI	CCGG	3 cut(s)	396, 635, 837
BslFI	GGGAC	4 cut(s)	323, 378, 506, 1580
BslI	CCNNNNNNNGG	4 cut(s)	408, 560, 868, 1839
BsmAI	GTCTC	4 cut(s)	168, 886, 1312, 1488
BsmBI	CGTCTC	1 cut(s)	168
BsmFI	GGGAC	4 cut(s)	323, 378, 506, 1580
BsmI	GAATGC	1 cut(s)	1819
BsnI	GGCC	4 cut(s)	184, 384, 752, 836
Bso31I	GGTCTC	1 cut(s)	1312
BsoBI	CYCGRG	1 cut(s)	634
Bsp119I	TTCGAA	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	716
Bsp143I	GATC	6 cut(s)	137, 729, 1287, 1336, 1607, 1668
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	5 cut(s)	233, 323, 957, 1203, 1438
BspANI	GGCC	4 cut(s)	184, 384, 752, 836
BspCNI	CTCAG	4 cut(s)	102, 501, 1144, 1687
BspFNI	CGCG	1 cut(s)	1440
BspHI	TCATGA	1 cut(s)	732
BspLI	GGNNCC	4 cut(s)	185, 249, 374, 400
BspMAI	CTGCAG	2 cut(s)	813, 1159
BspMI	ACCTGC	3 cut(s)	802, 1534, 1943
BspOI	GCTAGC	1 cut(s)	992
BspPI	GGATC	2 cut(s)	132, 1663
BspQI	GCTCTTC	2 cut(s)	1566, 1875
BspT104I	TTCGAA	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	372
BspTI	CTTAAG	1 cut(s)	1727
BspTNI	GGTCTC	1 cut(s)	1312
BsrDI	GCAATG	1 cut(s)	900
BsrFI	RCCGGY	1 cut(s)	836
BsrI	ACTGG	7 cut(s)	251, 317, 413, 1280, 1554, 1583, 1650
BssAI	RCCGGY	1 cut(s)	836
BssECI	CCNNGG	5 cut(s)	28, 379, 510, 634, 862
BssMI	GATC	6 cut(s)	137, 729, 1287, 1336, 1607, 1668
BssSI	CACGAG	1 cut(s)	1266
BssT1I	CCWWGG	3 cut(s)	28, 510, 862
Bst2BI	CACGAG	1 cut(s)	1266
Bst2UI	CCWGG	2 cut(s)	380, 789
Bst4CI	ACNGT	6 cut(s)	13, 162, 718, 916, 1735, 1802
Bst6I	CTCTTC	3 cut(s)	1566, 1598, 1875
BstAFI	CTTAAG	1 cut(s)	1727
BstAPI	GCANNNNNTGC	2 cut(s)	782, 817
BstBAI	YACGTR	2 cut(s)	674, 1033
BstBI	TTCGAA	1 cut(s)	74
BstC8I	GCNNGC	6 cut(s)	578, 712, 990, 1008, 1097, 1557
BstDEI	CTNAG	5 cut(s)	89, 488, 1131, 1614, 1695
BstDSI	CCRYGG	1 cut(s)	28
BstENI	CCTNNNNNAGG	1 cut(s)	558
BstF5I	GGATG	3 cut(s)	1367, 1861, 1861
BstFNI	CGCG	1 cut(s)	1440
BstHHI	GCGC	2 cut(s)	1169, 1442
BstKTI	GATC	6 cut(s)	140, 732, 1290, 1339, 1610, 1671
BstMAI	GTCTC	4 cut(s)	168, 886, 1312, 1488
BstMBI	GATC	6 cut(s)	137, 729, 1287, 1336, 1607, 1668
BstMWI	GCNNNNNNNGC	7 cut(s)	300, 381, 451, 758, 782, 817, 1256
BstNI	CCWGG	2 cut(s)	380, 789
BstNSI	RCATGY	2 cut(s)	1010, 1099
BstSCI	CCNGG	5 cut(s)	378, 394, 633, 634, 787
BstSFI	CTRYAG	2 cut(s)	809, 1155
BstUI	CGCG	1 cut(s)	1440
BstV1I	GCAGC	7 cut(s)	227, 617, 617, 719, 1432, 1454, 1774
BstV2I	GAAGAC	1 cut(s)	1235
BstX2I	RGATCY	2 cut(s)	137, 1668
BstYI	RGATCY	2 cut(s)	137, 1668
Bsu36I	CCTNAGG	1 cut(s)	488
BsuRI	GGCC	4 cut(s)	184, 384, 752, 836
BtgI	CCRYGG	1 cut(s)	28
BtgZI	GCGATG	2 cut(s)	196, 579
BtsCI	GGATG	3 cut(s)	1367, 1861, 1861
BtsI	GCAGTG	1 cut(s)	806
BtsIMutI	CAGTG	6 cut(s)	249, 289, 699, 714, 806, 1287
BveI	ACCTGC	3 cut(s)	802, 1534, 1943
Cac8I	GCNNGC	6 cut(s)	578, 712, 990, 1008, 1097, 1557
CaiI	CAGNNNCTG	1 cut(s)	312
CciI	TCATGA	1 cut(s)	732
CfoI	GCGC	2 cut(s)	1169, 1442
Cfr10I	RCCGGY	1 cut(s)	836
Cfr13I	GGNCC	2 cut(s)	183, 382
Cfr9I	CCCGGG	1 cut(s)	634
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	7 cut(s)	14, 541, 856, 1160, 1523, 1703, 1786
CviAII	CATG	8 cut(s)	29, 733, 1007, 1096, 1164, 1340, 1766, 1819
CviQI	GTAC	7 cut(s)	14, 541, 856, 1160, 1523, 1703, 1786
DdeI	CTNAG	5 cut(s)	89, 488, 1131, 1614, 1695
DpnI	GATC	6 cut(s)	139, 731, 1289, 1338, 1609, 1670
DpnII	GATC	6 cut(s)	137, 729, 1287, 1336, 1607, 1668
EaeI	YGGCCR	2 cut(s)	750, 834
Eam1104I	CTCTTC	3 cut(s)	1566, 1598, 1875
EarI	CTCTTC	3 cut(s)	1566, 1598, 1875
Eco130I	CCWWGG	3 cut(s)	28, 510, 862
Eco31I	GGTCTC	1 cut(s)	1312
Eco57I	CTGAAG	5 cut(s)	28, 265, 289, 521, 1622
Eco72I	CACGTG	1 cut(s)	674
Eco81I	CCTNAGG	1 cut(s)	488
Eco88I	CYCGRG	1 cut(s)	634
EcoNI	CCTNNNNNAGG	1 cut(s)	558
EcoRI	GAATTC	1 cut(s)	1102
EcoRII	CCWGG	2 cut(s)	378, 787
EcoT14I	CCWWGG	3 cut(s)	28, 510, 862
EcoT22I	ATGCAT	2 cut(s)	349, 1012
ErhI	CCWWGG	3 cut(s)	28, 510, 862
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	8 cut(s)	32, 736, 1010, 1099, 1167, 1343, 1769, 1822
FaqI	GGGAC	4 cut(s)	323, 378, 506, 1580
FatI	CATG	8 cut(s)	28, 732, 1006, 1095, 1163, 1339, 1765, 1818
FbaI	TGATCA	3 cut(s)	729, 1287, 1336
FblI	GTMKAC	1 cut(s)	976
Fnu4HI	GCNGC	8 cut(s)	216, 233, 606, 631, 708, 1443, 1446, 1763
FokI	GGATG	3 cut(s)	1374, 1848, 1868
Fsp4HI	GCNGC	8 cut(s)	216, 233, 606, 631, 708, 1443, 1446, 1763
FspBI	CTAG	3 cut(s)	989, 1124, 1260
GlaI	GCGC	2 cut(s)	1168, 1441
GluI	GCNGC	8 cut(s)	216, 233, 606, 631, 708, 1443, 1446, 1763
GsuI	CTGGAG	2 cut(s)	234, 1571
HaeIII	GGCC	4 cut(s)	184, 384, 752, 836
HapII	CCGG	3 cut(s)	396, 635, 837
HgaI	GACGC	1 cut(s)	503
HhaI	GCGC	2 cut(s)	1169, 1442
Hin1II	CATG	8 cut(s)	32, 736, 1010, 1099, 1167, 1343, 1769, 1822
Hin6I	GCGC	2 cut(s)	1167, 1440
HinP1I	GCGC	2 cut(s)	1167, 1440
HincII	GTYRAC	2 cut(s)	9, 1936
HindII	GTYRAC	2 cut(s)	9, 1936
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	9 cut(s)	48, 586, 850, 1235, 1240, 1271, 1687, 1749, 1837
HpaI	GTTAAC	1 cut(s)	1936
HpaII	CCGG	3 cut(s)	396, 635, 837
Hpy166II	GTNNAC	6 cut(s)	9, 58, 977, 1465, 1523, 1936
Hpy188I	TCNGA	7 cut(s)	47, 92, 354, 849, 1215, 1368, 1425
Hpy188III	TCNNGA	7 cut(s)	561, 733, 1014, 1268, 1391, 1487, 1565
Hpy8I	GTNNAC	6 cut(s)	9, 58, 977, 1465, 1523, 1936
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	5 cut(s)	52, 120, 211, 412, 1010
HpyCH4III	ACNGT	6 cut(s)	13, 162, 718, 916, 1735, 1802
HpyCH4IV	ACGT	4 cut(s)	476, 673, 1032, 1220
HpyF10VI	GCNNNNNNNGC	7 cut(s)	300, 381, 451, 758, 782, 817, 1256
HpyF3I	CTNAG	5 cut(s)	89, 488, 1131, 1614, 1695
HpySE526I	ACGT	4 cut(s)	476, 673, 1032, 1220
Hsp92II	CATG	8 cut(s)	32, 736, 1010, 1099, 1167, 1343, 1769, 1822
HspAI	GCGC	2 cut(s)	1167, 1440
Ksp22I	TGATCA	3 cut(s)	729, 1287, 1336
KspAI	GTTAAC	1 cut(s)	1936
Kzo9I	GATC	6 cut(s)	137, 729, 1287, 1336, 1607, 1668
LguI	GCTCTTC	2 cut(s)	1566, 1875
LmnI	GCTCC	4 cut(s)	253, 300, 1426, 1552
Lsp1109I	GCAGC	7 cut(s)	227, 617, 617, 719, 1432, 1454, 1774
LweI	GCATC	7 cut(s)	540, 772, 882, 1019, 1073, 1480, 1939
MaeI	CTAG	3 cut(s)	989, 1124, 1260
MaeII	ACGT	4 cut(s)	476, 673, 1032, 1220
MaeIII	GTNAC	7 cut(s)	412, 650, 658, 907, 1028, 1044, 1198
MalI	GATC	6 cut(s)	139, 731, 1289, 1338, 1609, 1670
MboI	GATC	6 cut(s)	137, 729, 1287, 1336, 1607, 1668
MboII	GAAGA	7 cut(s)	527, 815, 1235, 1424, 1553, 1615, 1892
MfeI	CAATTG	2 cut(s)	939, 1083
MflI	RGATCY	2 cut(s)	137, 1668
MhlI	GDGCHC	1 cut(s)	716
MluCI	AATT	9 cut(s)	427, 875, 939, 1083, 1102, 1475, 1583, 1895, 1941
MlyI	GAGTC	1 cut(s)	1249
Mph1103I	ATGCAT	2 cut(s)	349, 1012
MroXI	GAANNNNTTC	3 cut(s)	278, 1220, 1841
MseI	TTAA	9 cut(s)	440, 698, 873, 1430, 1473, 1728, 1793, 1935, 1940
MslI	CAYNNNNRTG	2 cut(s)	905, 1360
MspA1I	CMGCKG	2 cut(s)	608, 1445
MspCI	CTTAAG	1 cut(s)	1727
MspI	CCGG	3 cut(s)	396, 635, 837
MspR9I	CCNGG	5 cut(s)	380, 396, 635, 636, 789
MunI	CAATTG	2 cut(s)	939, 1083
Mva1269I	GAATGC	1 cut(s)	1819
MvaI	CCWGG	2 cut(s)	380, 789
MvnI	CGCG	1 cut(s)	1440
MwoI	GCNNNNNNNGC	7 cut(s)	300, 381, 451, 758, 782, 817, 1256
NciI	CCSGG	3 cut(s)	396, 635, 636
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	6 cut(s)	137, 729, 1287, 1336, 1607, 1668
NheI	GCTAGC	1 cut(s)	988
NlaIII	CATG	8 cut(s)	32, 736, 1010, 1099, 1167, 1343, 1769, 1822
NlaIV	GGNNCC	4 cut(s)	185, 249, 374, 400
NmuCI	GTSAC	4 cut(s)	412, 658, 907, 1198
NsiI	ATGCAT	2 cut(s)	349, 1012
NspI	RCATGY	2 cut(s)	1010, 1099
NspV	TTCGAA	1 cut(s)	74
PaeI	GCATGC	2 cut(s)	1010, 1099
PagI	TCATGA	1 cut(s)	732
PciSI	GCTCTTC	2 cut(s)	1566, 1875
PctI	GAATGC	1 cut(s)	1819
PdmI	GAANNNNTTC	3 cut(s)	278, 1220, 1841
PfeI	GAWTC	8 cut(s)	48, 586, 850, 1235, 1271, 1687, 1749, 1837
PflMI	CCANNNNNTGG	1 cut(s)	868
PkrI	GCNGC	8 cut(s)	217, 234, 607, 632, 709, 1444, 1447, 1764
PleI	GAGTC	1 cut(s)	1248
PmaCI	CACGTG	1 cut(s)	674
PmlI	CACGTG	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	1248
Ppu21I	YACGTR	2 cut(s)	674, 1033
Psp1406I	AACGTT	1 cut(s)	1220
Psp6I	CCWGG	2 cut(s)	378, 787
PspCI	CACGTG	1 cut(s)	674
PspGI	CCWGG	2 cut(s)	378, 787
PspN4I	GGNNCC	4 cut(s)	185, 249, 374, 400
PspPI	GGNCC	2 cut(s)	183, 382
PstI	CTGCAG	2 cut(s)	813, 1159
PstNI	CAGNNNCTG	1 cut(s)	312
PsuI	RGATCY	2 cut(s)	137, 1668
PvuII	CAGCTG	2 cut(s)	608, 1445
RsaI	GTAC	7 cut(s)	15, 542, 857, 1161, 1524, 1704, 1787
RsaNI	GTAC	7 cut(s)	14, 541, 856, 1160, 1523, 1703, 1786
RseI	CAYNNNNRTG	2 cut(s)	905, 1360
SapI	GCTCTTC	2 cut(s)	1566, 1875
SaqAI	TTAA	9 cut(s)	440, 698, 873, 1430, 1473, 1728, 1793, 1935, 1940
SatI	GCNGC	8 cut(s)	216, 233, 606, 631, 708, 1443, 1446, 1763
Sau3AI	GATC	6 cut(s)	137, 729, 1287, 1336, 1607, 1668
Sau96I	GGNCC	2 cut(s)	183, 382
ScaI	AGTACT	4 cut(s)	15, 542, 857, 1787
SchI	GAGTC	1 cut(s)	1249
ScrFI	CCNGG	5 cut(s)	380, 396, 635, 636, 789
SduI	GDGCHC	1 cut(s)	716
SfaNI	GCATC	7 cut(s)	540, 772, 882, 1019, 1073, 1480, 1939
SfcI	CTRYAG	2 cut(s)	809, 1155
SfuI	TTCGAA	1 cut(s)	74
SmaI	CCCGGG	1 cut(s)	636
SmiMI	CAYNNNNRTG	2 cut(s)	905, 1360
SmlI	CTYRAG	2 cut(s)	965, 1727
SmoI	CTYRAG	2 cut(s)	965, 1727
SphI	GCATGC	2 cut(s)	1010, 1099
Sse9I	AATT	9 cut(s)	427, 875, 939, 1083, 1102, 1475, 1583, 1895, 1941
SsiI	CCGC	5 cut(s)	233, 323, 957, 1203, 1438
SspMI	CTAG	3 cut(s)	989, 1124, 1260
StyD4I	CCNGG	5 cut(s)	378, 394, 633, 634, 787
StyI	CCWWGG	3 cut(s)	28, 510, 862
TaaI	ACNGT	6 cut(s)	13, 162, 718, 916, 1735, 1802
TaiI	ACGT	4 cut(s)	479, 676, 1035, 1223
TaqI	TCGA	4 cut(s)	74, 272, 1238, 1390
TasI	AATT	9 cut(s)	427, 875, 939, 1083, 1102, 1475, 1583, 1895, 1941
TatI	WGTACW	4 cut(s)	13, 540, 855, 1785
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	8 cut(s)	48, 586, 850, 1235, 1271, 1687, 1749, 1837
Tru1I	TTAA	9 cut(s)	440, 698, 873, 1430, 1473, 1728, 1793, 1935, 1940
Tru9I	TTAA	9 cut(s)	440, 698, 873, 1430, 1473, 1728, 1793, 1935, 1940
TscAI	CASTG	6 cut(s)	249, 289, 699, 721, 813, 1287
TseFI	GTSAC	4 cut(s)	412, 658, 907, 1198
TseI	GCWGC	7 cut(s)	215, 605, 630, 707, 1442, 1445, 1762
Tsp45I	GTSAC	4 cut(s)	412, 658, 907, 1198
TspDTI	ATGAA	4 cut(s)	9, 1431, 1674, 1947
TspGWI	ACGGA	1 cut(s)	1889
TspMI	CCCGGG	1 cut(s)	634
TspRI	CASTG	6 cut(s)	249, 289, 699, 721, 813, 1287
Van91I	CCANNNNNTGG	1 cut(s)	868
Vha464I	CTTAAG	1 cut(s)	1727
XagI	CCTNNNNNAGG	1 cut(s)	558
XapI	RAATTY	4 cut(s)	875, 1102, 1475, 1895
XceI	RCATGY	2 cut(s)	1010, 1099
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1680
XmaI	CCCGGG	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	976
XmnI	GAANNNNTTC	3 cut(s)	278, 1220, 1841
XspI	CTAG	3 cut(s)	989, 1124, 1260
ZrmI	AGTACT	4 cut(s)	15, 542, 857, 1787
Zsp2I	ATGCAT	2 cut(s)	349, 1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.