Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006339

Physical Location & Seq

Genomic Coordinates Reverse (-)

11204897 .. 11207993

Gene Structure 3097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17590.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGCAGTCATCACTTTCATACTCCCACTGCAACAAAACCTTCACATTCAAACCAAACCCAAACCCCATTCCAAACCAGTCCCTACTCAGACCCACTAAACCCTCCTCCAAACCACCAACACCACCTTCCTCCTCCATCCACCTCACACTAAGATCCCACTCCCACCCACAACCACTCTCCCCTCAAAACCCCAAAAGACCCTTCTCCTCAGTGACCCCACTTGGTTCAGGCATTTCCTCCAACAGCTTCAGTGCCAATGGCAACCGGAGCTTCCGGGACTGGGTCGAGGCGGCGAGTGAGGCTGTGTCCAATGCCTTTCCGATTTGGGTCGCTTTGGGGTGCCTGTTGGGCTTGCTCAGCCCAGCTTCCTTCAACTGGGTCACCCCCAAGTTCAATTTTTTGGGGTTAACAGTCACTATGCTTGGGATGGGTATGACTCTAACGTTCAATGACCTTAGGGATGCTCTTGCTATGCCCAAGGAGCTGTTTTGCGGCTTCGCTCTTCAATACTCGGTGATGCCTTTATCAGGGTATTTTGTGAGCAAGCTTTTGAATCTGCCGTCGCATTATGCGGCTGGTTTGATATTGGTTGCGTGCTGCCCGGGTGGGACGGCAAGTAACATTGTCACTTATATTGCACGTGGAAATGTGGCACTTTCAGTGTTAATGACAGCAGCAAGCACTGTATCAGCCGTGGTTGATCATGACCCCCTTTCTCACAGCCAAACTTGCTGGTCAATACGTTGCAGTCGATGCAGCTGGGATGTTATTCTCTACACTGCAGGTGTTCTTTGTGGGAATGCAATTGCCCAGAGTTCCTCTGCAATCCTTACATCAGGTCTACAAGTTGTGCTAGCTTCATCTCTTCTGCATGCATCTGGATTTTTCTTTGGGTACGTGCTTTCAAGGTTACTTGGGCTTGATGTGGCAGCATCAAGAACTATCTCAATCGAGGTTGGCATGCAGAATTCAGTGCTTGGGGTTGTTCTAGCTACTCAGCACTTTGGAAATCCTCTTACTGCAGTACCATGTGCGGTTTCCAGCGTTTGCCATTCAATCATTGGTAGTGCCTTGGCAGGAATATGGAGACGGAGCGTGCCGAAAGAGCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

372

Amino Acids

39.38

Weight (kDa)

9.11

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	106 - 397	8.3e-16	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	134 - 310	4.3e-40	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78560
fragaria_vesca	FvH4_3g17590 FvH4_3g17590 FvH4_3g17590 FvH4_3g17590
malus_domestica	MD03G1250900.v1.1 MD03G1251000.v1.1 MD03G1251100.v1.1 MD03G1251200.v1.1 MD11G1271200.v1.1
prunus_persica	Prupe.4G155400_v2.0.a1
pyrus_communis	pycom03g19860 pycom11g23980 pycom11g24010 pycom11g24030
rosa_chinensis	RchiOBHm_Chr5g0029301
rosa_laevigata	RLG00000033151
rosa_multiflora	Rmu_ssc0000405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050710
rosa_rugosa	Rorug05G0112900
rosa_samantha	Rh2BG192800 Rh5AG205100 Rh5AG205200 Rh5BG203700 Rh5CG225100 Rh5DG207300
rosa_wichuraiana	Rw5G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	773
Acc36I	ACCTGC	1 cut(s)	773
AccB1I	GGYRCC	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	841
AciI	CCGC	4 cut(s)	290, 492, 572, 1034
AclI	AACGTT	1 cut(s)	443
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	967
AcuI	CTGAAG	1 cut(s)	232
AcvI	CACGTG	1 cut(s)	641
AfaI	GTAC	2 cut(s)	896, 1026
AfiI	CCNNNNNNNGG	3 cut(s)	280, 375, 527
AgsI	TTSAA	8 cut(s)	49, 373, 394, 448, 506, 553, 906, 1056
AjuI	GAANNNNNNNTTGG	4 cut(s)	109, 141, 185, 217
AluBI	AGCT	8 cut(s)	246, 270, 365, 484, 547, 759, 857, 992
AluI	AGCT	8 cut(s)	246, 270, 365, 484, 547, 759, 857, 992
Alw26I	GTCTC	1 cut(s)	1081
AlwI	GGATC	1 cut(s)	147
Ama87I	CYCGRG	1 cut(s)	601
ApeKI	GCWGC	4 cut(s)	597, 674, 756, 929
ApoI	RAATTY	1 cut(s)	967
AsuC2I	CCSGG	3 cut(s)	275, 602, 603
AsuHPI	GGTGA	2 cut(s)	373, 526
AsuNHI	GCTAGC	1 cut(s)	853
AvaI	CYCGRG	1 cut(s)	601
AxyI	CCTNAGG	1 cut(s)	455
BaeI	ACNNNNGTAYC	2 cut(s)	1008, 1041
BanI	GGYRCC	1 cut(s)	339
BbrPI	CACGTG	1 cut(s)	641
BbvI	GCAGC	4 cut(s)	584, 686, 768, 941
BccI	CCATC	2 cut(s)	143, 421
BceAI	ACGGC	3 cut(s)	544, 627, 677
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	3 cut(s)	275, 602, 603
BcoDI	GTCTC	1 cut(s)	1081
BfaI	CTAG	2 cut(s)	854, 989
BfmI	CTRYAG	2 cut(s)	780, 1020
BfuAI	ACCTGC	1 cut(s)	773
BglI	GCCNNNNNGGC	1 cut(s)	348
BisI	GCNGC	7 cut(s)	291, 493, 573, 598, 675, 757, 930
BlpI	GCTNAGC	1 cut(s)	356
BlsI	GCNGC	7 cut(s)	292, 494, 574, 599, 676, 758, 931
Bme1390I	CCNGG	3 cut(s)	275, 602, 603
BmeT110I	CYCGRG	1 cut(s)	601
BmiI	GGNNCC	1 cut(s)	341
BmrFI	CCNGG	3 cut(s)	275, 602, 603
BmrI	ACTGGG	2 cut(s)	289, 385
BmsI	GCATC	5 cut(s)	451, 507, 743, 884, 941
BmtI	GCTAGC	1 cut(s)	857
BmuI	ACTGGG	2 cut(s)	289, 385
Bpu1102I	GCTNAGC	1 cut(s)	356
BpuMI	CCSGG	3 cut(s)	275, 602, 603
BsaAI	YACGTR	2 cut(s)	641, 898
BsaJI	CCNNGG	4 cut(s)	477, 601, 693, 1071
BsaWI	WCCGGW	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 375, 527
Bse1I	ACTGG	3 cut(s)	76, 284, 380
Bse21I	CCTNAGG	1 cut(s)	455
BseDI	CCNNGG	4 cut(s)	477, 601, 693, 1071
BseGI	GGATG	4 cut(s)	135, 432, 466, 769
BseLI	CCNNNNNNNGG	3 cut(s)	280, 375, 527
BseMII	CTCAG	4 cut(s)	100, 222, 370, 1010
BseNI	ACTGG	3 cut(s)	76, 284, 380
BseRI	GAGGAG	3 cut(s)	94, 121, 196
BseXI	GCAGC	4 cut(s)	584, 686, 768, 941
BseYI	CCCAGC	2 cut(s)	361, 759
BshNI	GGYRCC	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	601
BsiSI	CCGG	3 cut(s)	265, 274, 602
BslFI	GGGAC	3 cut(s)	64, 290, 622
BslI	CCNNNNNNNGG	3 cut(s)	280, 375, 527
BsmAI	GTCTC	1 cut(s)	1081
BsmBI	CGTCTC	1 cut(s)	1081
BsmFI	GGGAC	3 cut(s)	64, 290, 622
BsmI	GAATGC	1 cut(s)	805
BsoBI	CYCGRG	1 cut(s)	601
Bsp143I	GATC	2 cut(s)	152, 700
Bsp1720I	GCTNAGC	1 cut(s)	356
BspACI	CCGC	4 cut(s)	290, 492, 572, 1034
BspCNI	CTCAG	4 cut(s)	99, 221, 369, 1009
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	1 cut(s)	341
BspMAI	CTGCAG	2 cut(s)	784, 1024
BspMI	ACCTGC	1 cut(s)	773
BspOI	GCTAGC	1 cut(s)	857
BspPI	GGATC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	507
BspT107I	GGYRCC	1 cut(s)	339
BsrI	ACTGG	3 cut(s)	76, 284, 380
BssECI	CCNNGG	4 cut(s)	477, 601, 693, 1071
BssMI	GATC	2 cut(s)	152, 700
BssT1I	CCWWGG	2 cut(s)	477, 1071
Bst4CI	ACNGT	2 cut(s)	412, 685
Bst6I	CTCTTC	2 cut(s)	507, 870
BstAPI	GCANNNNNTGC	1 cut(s)	753
BstBAI	YACGTR	2 cut(s)	641, 898
BstC8I	GCNNGC	8 cut(s)	353, 545, 595, 679, 855, 873, 962, 1097
BstDEI	CTNAG	6 cut(s)	86, 149, 208, 356, 455, 996
BstDSI	CCRYGG	1 cut(s)	693
BstEII	GGTNACC	1 cut(s)	379
BstENI	CCTNNNNNAGG	1 cut(s)	525
BstF5I	GGATG	4 cut(s)	135, 432, 466, 769
BstKTI	GATC	2 cut(s)	155, 703
BstMAI	GTCTC	1 cut(s)	1081
BstMBI	GATC	2 cut(s)	152, 700
BstMWI	GCNNNNNNNGC	8 cut(s)	267, 299, 348, 357, 481, 729, 753, 1105
BstNSI	RCATGY	2 cut(s)	875, 964
BstPI	GGTNACC	1 cut(s)	379
BstSCI	CCNGG	3 cut(s)	273, 600, 601
BstSFI	CTRYAG	2 cut(s)	780, 1020
BstV1I	GCAGC	4 cut(s)	584, 686, 768, 941
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
Bsu36I	CCTNAGG	1 cut(s)	455
BtgI	CCRYGG	1 cut(s)	693
BtsCI	GGATG	4 cut(s)	135, 432, 466, 769
BtsI	GCAGTG	2 cut(s)	25, 777
BtsIMutI	CAGTG	7 cut(s)	25, 216, 256, 666, 681, 777, 978
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	8 cut(s)	353, 545, 595, 679, 855, 873, 962, 1097
CciI	TCATGA	1 cut(s)	703
Cfr9I	CCCGGG	1 cut(s)	601
Csp6I	GTAC	2 cut(s)	895, 1025
CviAII	CATG	4 cut(s)	704, 872, 961, 1029
CviQI	GTAC	2 cut(s)	895, 1025
DdeI	CTNAG	6 cut(s)	86, 149, 208, 356, 455, 996
DpnI	GATC	2 cut(s)	154, 702
DpnII	GATC	2 cut(s)	152, 700
Eam1104I	CTCTTC	2 cut(s)	507, 870
EarI	CTCTTC	2 cut(s)	507, 870
Eco130I	CCWWGG	2 cut(s)	477, 1071
Eco57I	CTGAAG	1 cut(s)	232
Eco72I	CACGTG	1 cut(s)	641
Eco81I	CCTNAGG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	601
Eco91I	GGTNACC	1 cut(s)	379
EcoNI	CCTNNNNNAGG	1 cut(s)	525
EcoO65I	GGTNACC	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	967
EcoT14I	CCWWGG	2 cut(s)	477, 1071
EcoT22I	ATGCAT	1 cut(s)	877
ErhI	CCWWGG	2 cut(s)	477, 1071
Esp3I	CGTCTC	1 cut(s)	1081
FaeI	CATG	4 cut(s)	707, 875, 964, 1032
FaqI	GGGAC	3 cut(s)	64, 290, 622
FatI	CATG	4 cut(s)	703, 871, 960, 1028
FbaI	TGATCA	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	841
Fnu4HI	GCNGC	7 cut(s)	291, 493, 573, 598, 675, 757, 930
FokI	GGATG	4 cut(s)	122, 439, 473, 776
Fsp4HI	GCNGC	7 cut(s)	291, 493, 573, 598, 675, 757, 930
FspBI	CTAG	2 cut(s)	854, 989
GluI	GCNGC	7 cut(s)	291, 493, 573, 598, 675, 757, 930
GsaI	CCCAGC	2 cut(s)	365, 763
HapII	CCGG	3 cut(s)	265, 274, 602
Hin1II	CATG	4 cut(s)	707, 875, 964, 1032
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	2 cut(s)	436, 553
HpaI	GTTAAC	1 cut(s)	408
HpaII	CCGG	3 cut(s)	265, 274, 602
HphI	GGTGA	2 cut(s)	373, 526
Hpy166II	GTNNAC	2 cut(s)	408, 842
Hpy188I	TCNGA	2 cut(s)	89, 321
Hpy188III	TCNNGA	3 cut(s)	704, 879, 936
Hpy8I	GTNNAC	2 cut(s)	408, 842
Hpy99I	CGWCG	1 cut(s)	565
HpyAV	CCTTC	4 cut(s)	49, 135, 211, 379
HpyCH4III	ACNGT	2 cut(s)	412, 685
HpyCH4IV	ACGT	4 cut(s)	443, 640, 742, 897
HpyF10VI	GCNNNNNNNGC	8 cut(s)	267, 299, 348, 357, 481, 729, 753, 1105
HpyF3I	CTNAG	6 cut(s)	86, 149, 208, 356, 455, 996
HpySE526I	ACGT	4 cut(s)	443, 640, 742, 897
Hsp92II	CATG	4 cut(s)	707, 875, 964, 1032
Ksp22I	TGATCA	1 cut(s)	700
KspAI	GTTAAC	1 cut(s)	408
Kzo9I	GATC	2 cut(s)	152, 700
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	3 cut(s)	267, 481, 1092
Lsp1109I	GCAGC	4 cut(s)	584, 686, 768, 941
LweI	GCATC	5 cut(s)	451, 507, 743, 884, 941
MaeI	CTAG	2 cut(s)	854, 989
MaeII	ACGT	4 cut(s)	443, 640, 742, 897
MaeIII	GTNAC	6 cut(s)	211, 379, 412, 617, 625, 909
MalI	GATC	2 cut(s)	154, 702
MboI	GATC	2 cut(s)	152, 700
MboII	GAAGA	2 cut(s)	494, 857
MfeI	CAATTG	1 cut(s)	804
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	3 cut(s)	394, 804, 967
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	264
Mph1103I	ATGCAT	1 cut(s)	877
MseI	TTAA	2 cut(s)	407, 665
MspA1I	CMGCKG	1 cut(s)	759
MspI	CCGG	3 cut(s)	265, 274, 602
MspR9I	CCNGG	3 cut(s)	275, 602, 603
MunI	CAATTG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	805
MwoI	GCNNNNNNNGC	8 cut(s)	267, 299, 348, 357, 481, 729, 753, 1105
NciI	CCSGG	3 cut(s)	275, 602, 603
NdeII	GATC	2 cut(s)	152, 700
NheI	GCTAGC	1 cut(s)	853
NlaIII	CATG	4 cut(s)	707, 875, 964, 1032
NlaIV	GGNNCC	1 cut(s)	341
NmuCI	GTSAC	4 cut(s)	211, 379, 412, 625
NsiI	ATGCAT	1 cut(s)	877
NspI	RCATGY	2 cut(s)	875, 964
PaeI	GCATGC	2 cut(s)	875, 964
PagI	TCATGA	1 cut(s)	703
PaqCI	CACCTGC	1 cut(s)	773
PciSI	GCTCTTC	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	1 cut(s)	748
PctI	GAATGC	1 cut(s)	805
PfeI	GAWTC	1 cut(s)	553
PflFI	GACNNNGTC	1 cut(s)	281
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	7 cut(s)	292, 494, 574, 599, 676, 758, 931
PleI	GAGTC	1 cut(s)	430
PmaCI	CACGTG	1 cut(s)	641
PmlI	CACGTG	1 cut(s)	641
PpsI	GAGTC	1 cut(s)	430
Ppu21I	YACGTR	2 cut(s)	641, 898
Psp1406I	AACGTT	1 cut(s)	443
PspCI	CACGTG	1 cut(s)	641
PspEI	GGTNACC	1 cut(s)	379
PspFI	CCCAGC	2 cut(s)	361, 759
PspN4I	GGNNCC	1 cut(s)	341
PstI	CTGCAG	2 cut(s)	784, 1024
PsuI	RGATCY	1 cut(s)	152
PsyI	GACNNNGTC	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	759
RsaI	GTAC	2 cut(s)	896, 1026
RsaNI	GTAC	2 cut(s)	895, 1025
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	407, 665
SatI	GCNGC	7 cut(s)	291, 493, 573, 598, 675, 757, 930
Sau3AI	GATC	2 cut(s)	152, 700
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	3 cut(s)	275, 602, 603
SfaNI	GCATC	5 cut(s)	451, 507, 743, 884, 941
SfcI	CTRYAG	2 cut(s)	780, 1020
SmaI	CCCGGG	1 cut(s)	603
SphI	GCATGC	2 cut(s)	875, 964
Sse9I	AATT	3 cut(s)	394, 804, 967
SsiI	CCGC	4 cut(s)	290, 492, 572, 1034
SspMI	CTAG	2 cut(s)	854, 989
StyD4I	CCNGG	3 cut(s)	273, 600, 601
StyI	CCWWGG	2 cut(s)	477, 1071
TaaI	ACNGT	2 cut(s)	412, 685
TaiI	ACGT	4 cut(s)	446, 643, 745, 900
TaqI	TCGA	3 cut(s)	285, 751, 951
TasI	AATT	3 cut(s)	394, 804, 967
TauI	GCSGC	3 cut(s)	293, 495, 575
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	2 cut(s)	407, 665
Tru9I	TTAA	2 cut(s)	407, 665
TscAI	CASTG	7 cut(s)	32, 216, 256, 666, 688, 784, 978
TseFI	GTSAC	4 cut(s)	211, 379, 412, 625
TseI	GCWGC	4 cut(s)	597, 674, 756, 929
Tsp45I	GTSAC	4 cut(s)	211, 379, 412, 625
TspDTI	ATGAA	2 cut(s)	6, 849
TspGWI	ACGGA	1 cut(s)	1105
TspMI	CCCGGG	1 cut(s)	601
TspRI	CASTG	7 cut(s)	32, 216, 256, 666, 688, 784, 978
Tth111I	GACNNNGTC	1 cut(s)	281
XagI	CCTNNNNNAGG	1 cut(s)	525
XapI	RAATTY	1 cut(s)	967
XceI	RCATGY	2 cut(s)	875, 964
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1058
XmaI	CCCGGG	1 cut(s)	601
XmiI	GTMKAC	1 cut(s)	841
XspI	CTAG	2 cut(s)	854, 989
Zsp2I	ATGCAT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.