AT1G79110

BOI-related E3 ubiquitin-protein ligase 2

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
29759030 .. 29760789
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79110.1

Sequence Viewer

Length: 1077 bp
ATGGCCGTCGATGCTCACCATCTCTTTCTTTCTCCTCCTCAACTCTTCTCCAACAGAGAATTAACGATGAATAATAACACTATGGAACCAACTAGTGGCGGTTTCTGCAATAACAATCAAACCGGTTACGGCGTCGTTTCACCTTTCTCCGTTCCAAACCATACATCAACAACAACAACAGCAACGCCTCCTCTTCTTCATGTGTACGGCGGCTCTGATACTATTCCCACCACCGCCGGTTACTACGCCGATGGTGCTACTAATCTCGACTGTGAATTTTTCCCTTTACCAACGAGAAAACGCTCAAGAGATTCTTCAAGATCAAATTATCATCATCTTCTTCTTCAGAACCCGAGATCATCATCATGTGTTAACGCTGCTACTACAACAACTACAACAACTCTGTTCTCGTTTCTTGGCCAAGACATTGATATCTCCTCTCACATGAATCAACAACAACACGAAATAGATCGATTCGTCTCCCTTCACTTATATCAGATGGAGAGAGTGAAATATGAGATAGAAGAGAAGAGGAAAAGACAAGCGAGAACGATAATGGAGGCGATAGAGCAAGGACTGGTTAAAAGGCTTCGTGTCAAAGAAGAAGAAAGAGAGAGGATCGGCAAGGTTAACCACGCGCTTGAGGAGCGAGTGAAGTCACTTTCTATAGAGAACCAAATCTGGAGAGACCTTGCTCAGACGAACGAAGCCACGGCTAACCACCTCCGAACCAACCTCGAGCATGTTCTGGCGCAGGTTAAGGACGTATCACGCGGCGCAGGATTAGAGAAAAACATGAACGAAGAGGACGATGCGGAGTCGTGCTGCGGAAGCAGCTGTGGTGGTGGTGGTGAAGAAACGGTAAGGCGCAGGGTAGGATTAGAAAGGGAGGCGCAGGATAAGGCGGAGAGGAGGAGGAGGAGGATGTGTAGAAACTGTGGGGAGGAGGAATCGTGTGTGTTGCTGTTACCGTGCAGACACTTGTGCTTGTGTGGAGTATGCGGGTCCAGTGTGCACACGTGTCCCATCTGTACATCTCCTAAAAACGCTAGCGTTCATGTCAACATGTCATCTTGA

Protein Analysis

358

Amino Acids

40.08

Weight (kDa)

6.73

Isoelectric Point (pI)

61.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 307 - 348 2.7e-09 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 745
AccB7I CCANNNNNTGG 1 cut(s) 95
AccII CGCG 2 cut(s) 638, 774
AciI CCGC 8 cut(s) 99, 210, 234, 774, 815, 828, 905, 1002
AclWI GGATC 1 cut(s) 626
AcoI YGGCCR 2 cut(s) 3, 418
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 329
AcvI CACGTG 1 cut(s) 1020
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 2 cut(s) 206, 1033
AfiI CCNNNNNNNGG 1 cut(s) 95
AflIII ACRYGT 3 cut(s) 1017, 1019, 1065
AgeI ACCGGT 1 cut(s) 122
AgsI TTSAA 1 cut(s) 318
AhlI ACTAGT 1 cut(s) 92
AluBI AGCT 1 cut(s) 837
AluI AGCT 1 cut(s) 837
Alw21I GWGCWC 1 cut(s) 1017
Alw26I GTCTC 2 cut(s) 484, 681
Alw44I GTGCAC 1 cut(s) 1013
AlwI GGATC 1 cut(s) 626
Ama87I CYCGRG 2 cut(s) 352, 737
AoxI GGCC 2 cut(s) 3, 418
ApaLI GTGCAC 1 cut(s) 1013
ApeKI GCWGC 3 cut(s) 377, 825, 834
ApoI RAATTY 1 cut(s) 275
AsiGI ACCGGT 1 cut(s) 122
AspLEI GCGC 5 cut(s) 640, 754, 779, 870, 895
AspS9I GGNCC 1 cut(s) 1005
AsuHPI GGTGA 3 cut(s) 8, 132, 863
AsuNHI GCTAGC 1 cut(s) 1049
AvaI CYCGRG 2 cut(s) 352, 737
AvaII GGWCC 1 cut(s) 1005
BaeGI GKGCMC 1 cut(s) 1017
BalI TGGCCA 1 cut(s) 420
BbrPI CACGTG 1 cut(s) 1020
Bbv12I GWGCWC 1 cut(s) 1017
BbvI GCAGC 3 cut(s) 364, 812, 846
BccI CCATC 4 cut(s) 27, 245, 493, 1034
BceAI ACGGC 3 cut(s) 145, 223, 729
BcoDI GTCTC 2 cut(s) 484, 681
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 2 cut(s) 93, 1050
BfmI CTRYAG 1 cut(s) 666
BfuAI ACCTGC 1 cut(s) 745
BisI GCNGC 5 cut(s) 211, 378, 775, 826, 835
BlsI GCNGC 5 cut(s) 212, 379, 776, 827, 836
Bme18I GGWCC 1 cut(s) 1005
BmeT110I CYCGRG 2 cut(s) 352, 737
BmgT120I GGNCC 1 cut(s) 1005
BmiI GGNNCC 2 cut(s) 87, 1006
BmsI GCATC 1 cut(s) 802
BmtI GCTAGC 1 cut(s) 1053
BpmI CTGGAG 1 cut(s) 703
BpuEI CTTGAG 2 cut(s) 289, 662
Bsa29I ATCGAT 1 cut(s) 472
BsaAI YACGTR 1 cut(s) 1020
BsaBI GATNNNNATC 1 cut(s) 361
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 681
BsaJI CCNNGG 1 cut(s) 711
BsaWI WCCGGW 1 cut(s) 122
BsaXI ACNNNNNCTCC 4 cut(s) 913, 938, 943, 968
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 2 cut(s) 122, 236
Bse1I ACTGG 2 cut(s) 582, 1008
Bse8I GATNNNNATC 1 cut(s) 361
BseCI ATCGAT 1 cut(s) 472
BseDI CCNNGG 1 cut(s) 711
BseGI GGATG 1 cut(s) 930
BseJI GATNNNNATC 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 710
BseNI ACTGG 2 cut(s) 582, 1008
BseSI GKGCMC 1 cut(s) 1017
BseXI GCAGC 3 cut(s) 364, 812, 846
BsgI GTGCAG 1 cut(s) 994
Bsh1236I CGCG 2 cut(s) 638, 774
BshFI GGCC 2 cut(s) 5, 420
BshTI ACCGGT 1 cut(s) 122
BshVI ATCGAT 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 1017
BsiHKCI CYCGRG 2 cut(s) 352, 737
BsiSI CCGG 2 cut(s) 123, 237
BslFI GGGAC 1 cut(s) 1008
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 484, 681
BsmBI CGTCTC 1 cut(s) 484
BsmFI GGGAC 1 cut(s) 1008
BsnI GGCC 2 cut(s) 5, 420
Bso31I GGTCTC 1 cut(s) 681
BsoBI CYCGRG 2 cut(s) 352, 737
Bsp1286I GDGCHC 1 cut(s) 1017
Bsp1407I TGTACA 1 cut(s) 1031
Bsp143I GATC 4 cut(s) 320, 356, 469, 618
BspACI CCGC 8 cut(s) 99, 210, 234, 774, 815, 828, 905, 1002
BspANI GGCC 2 cut(s) 5, 420
BspCNI CTCAG 1 cut(s) 709
BspDI ATCGAT 1 cut(s) 472
BspFNI CGCG 2 cut(s) 638, 774
BspLI GGNNCC 2 cut(s) 87, 1006
BspMI ACCTGC 1 cut(s) 745
BspOI GCTAGC 1 cut(s) 1053
BspPI GGATC 1 cut(s) 626
BspTNI GGTCTC 1 cut(s) 681
BsrFI RCCGGY 2 cut(s) 122, 236
BsrGI TGTACA 1 cut(s) 1031
BsrI ACTGG 2 cut(s) 582, 1008
BssAI RCCGGY 2 cut(s) 122, 236
BssECI CCNNGG 1 cut(s) 711
BssMI GATC 4 cut(s) 320, 356, 469, 618
BssNI GRCGYC 1 cut(s) 132
Bst4CI ACNGT 4 cut(s) 272, 862, 938, 972
Bst6I CTCTTC 5 cut(s) 50, 198, 519, 524, 798
BstACI GRCGYC 1 cut(s) 132
BstAUI TGTACA 1 cut(s) 1031
BstBAI YACGTR 1 cut(s) 1020
BstC8I GCNNGC 1 cut(s) 1051
BstDEI CTNAG 1 cut(s) 696
BstDSI CCRYGG 1 cut(s) 711
BstF5I GGATG 1 cut(s) 930
BstFNI CGCG 2 cut(s) 638, 774
BstHHI GCGC 5 cut(s) 640, 754, 779, 870, 895
BstKTI GATC 4 cut(s) 323, 359, 472, 621
BstMAI GTCTC 2 cut(s) 484, 681
BstMBI GATC 4 cut(s) 320, 356, 469, 618
BstMWI GCNNNNNNNGC 6 cut(s) 11, 105, 254, 646, 831, 834
BstNSI RCATGY 2 cut(s) 746, 1069
BstSFI CTRYAG 1 cut(s) 666
BstSLI GKGCMC 1 cut(s) 1017
BstUI CGCG 2 cut(s) 638, 774
BstV1I GCAGC 3 cut(s) 364, 812, 846
Bsu15I ATCGAT 1 cut(s) 472
BsuRI GGCC 2 cut(s) 5, 420
BsuTUI ATCGAT 1 cut(s) 472
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 1 cut(s) 930
BtsIMutI CAGTG 1 cut(s) 1015
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 1 cut(s) 1051
CfoI GCGC 5 cut(s) 640, 754, 779, 870, 895
Cfr10I RCCGGY 2 cut(s) 122, 236
Cfr13I GGNCC 1 cut(s) 1005
ClaI ATCGAT 1 cut(s) 472
CseI GACGC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 205, 1032
CspAI ACCGGT 1 cut(s) 122
CviAII CATG 7 cut(s) 200, 366, 445, 743, 796, 1058, 1066
CviJI RGCY 7 cut(s) 5, 213, 420, 589, 710, 716, 837
CviKI_1 RGCY 7 cut(s) 5, 213, 420, 589, 710, 716, 837
CviQI GTAC 2 cut(s) 205, 1032
DdeI CTNAG 1 cut(s) 696
DpnI GATC 4 cut(s) 322, 358, 471, 620
DpnII GATC 4 cut(s) 320, 356, 469, 618
EaeI YGGCCR 2 cut(s) 3, 418
Eam1104I CTCTTC 5 cut(s) 50, 198, 519, 524, 798
EarI CTCTTC 5 cut(s) 50, 198, 519, 524, 798
EciI GGCGGA 1 cut(s) 920
Eco31I GGTCTC 1 cut(s) 681
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 1005
Eco57I CTGAAG 1 cut(s) 329
Eco72I CACGTG 1 cut(s) 1020
Eco88I CYCGRG 2 cut(s) 352, 737
EcoRV GATATC 1 cut(s) 433
Esp3I CGTCTC 1 cut(s) 484
FaeI CATG 7 cut(s) 203, 369, 448, 746, 799, 1061, 1069
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FaqI GGGAC 1 cut(s) 1008
FatI CATG 7 cut(s) 199, 365, 444, 742, 795, 1057, 1065
FauI CCCGC 1 cut(s) 995
Fnu4HI GCNGC 5 cut(s) 211, 378, 775, 826, 835
FokI GGATG 1 cut(s) 937
Fsp4HI GCNGC 5 cut(s) 211, 378, 775, 826, 835
FspBI CTAG 2 cut(s) 93, 1050
GlaI GCGC 5 cut(s) 639, 753, 778, 869, 894
GluI GCNGC 5 cut(s) 211, 378, 775, 826, 835
GsuI CTGGAG 1 cut(s) 703
HaeIII GGCC 2 cut(s) 5, 420
HapII CCGG 2 cut(s) 123, 237
HgaI GACGC 1 cut(s) 121
HhaI GCGC 5 cut(s) 640, 754, 779, 870, 895
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 7 cut(s) 203, 369, 448, 746, 799, 1061, 1069
Hin6I GCGC 5 cut(s) 638, 752, 777, 868, 893
HinP1I GCGC 5 cut(s) 638, 752, 777, 868, 893
HincII GTYRAC 3 cut(s) 373, 631, 1063
HindII GTYRAC 3 cut(s) 373, 631, 1063
HinfI GANTC 5 cut(s) 311, 448, 474, 818, 950
HpaI GTTAAC 2 cut(s) 373, 631
HpaII CCGG 2 cut(s) 123, 237
HphI GGTGA 3 cut(s) 8, 132, 863
Hpy166II GTNNAC 5 cut(s) 205, 373, 631, 1015, 1063
Hpy188I TCNGA 5 cut(s) 217, 348, 498, 699, 728
Hpy188III TCNNGA 5 cut(s) 266, 306, 318, 682, 1074
Hpy8I GTNNAC 5 cut(s) 205, 373, 631, 1015, 1063
Hpy99I CGWCG 2 cut(s) 11, 137
HpyAV CCTTC 1 cut(s) 494
HpyCH4III ACNGT 4 cut(s) 272, 862, 938, 972
HpyCH4IV ACGT 2 cut(s) 765, 1019
HpyCH4V TGCA 3 cut(s) 108, 975, 1015
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 105, 254, 646, 831, 834
HpyF3I CTNAG 1 cut(s) 696
HpySE526I ACGT 2 cut(s) 765, 1019
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 7 cut(s) 203, 369, 448, 746, 799, 1061, 1069
HspAI GCGC 5 cut(s) 638, 752, 777, 868, 893
KspAI GTTAAC 2 cut(s) 373, 631
Kzo9I GATC 4 cut(s) 320, 356, 469, 618
LmnI GCTCC 1 cut(s) 646
Lsp1109I GCAGC 3 cut(s) 364, 812, 846
LweI GCATC 1 cut(s) 802
MaeI CTAG 2 cut(s) 93, 1050
MaeII ACGT 2 cut(s) 765, 1019
MaeIII GTNAC 4 cut(s) 125, 239, 657, 966
MalI GATC 4 cut(s) 322, 358, 471, 620
MboI GATC 4 cut(s) 320, 356, 469, 618
MhlI GDGCHC 1 cut(s) 1017
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 3 cut(s) 59, 275, 325
MluNI TGGCCA 1 cut(s) 420
MlyI GAGTC 1 cut(s) 827
MmeI TCCRAC 1 cut(s) 75
Mox20I TGGCCA 1 cut(s) 420
MscI TGGCCA 1 cut(s) 420
MseI TTAA 5 cut(s) 62, 372, 582, 630, 759
MslI CAYNNNNRTG 1 cut(s) 364
Msp20I TGGCCA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 837
MspI CCGG 2 cut(s) 123, 237
MvnI CGCG 2 cut(s) 638, 774
MwoI GCNNNNNNNGC 6 cut(s) 11, 105, 254, 646, 831, 834
NdeII GATC 4 cut(s) 320, 356, 469, 618
NheI GCTAGC 1 cut(s) 1049
NlaIII CATG 7 cut(s) 203, 369, 448, 746, 799, 1061, 1069
NlaIV GGNNCC 2 cut(s) 87, 1006
NmuCI GTSAC 1 cut(s) 657
NspI RCATGY 2 cut(s) 746, 1069
PaeR7I CTCGAG 1 cut(s) 737
PciI ACATGT 1 cut(s) 1065
PcsI WCGNNNNNNNCGW 1 cut(s) 807
PfeI GAWTC 4 cut(s) 311, 448, 474, 950
PflMI CCANNNNNTGG 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 122
PkrI GCNGC 5 cut(s) 212, 379, 776, 827, 836
PleI GAGTC 1 cut(s) 826
PmaCI CACGTG 1 cut(s) 1020
PmlI CACGTG 1 cut(s) 1020
PpsI GAGTC 1 cut(s) 826
Ppu21I YACGTR 1 cut(s) 1020
PscI ACATGT 1 cut(s) 1065
PspCI CACGTG 1 cut(s) 1020
PspN4I GGNNCC 2 cut(s) 87, 1006
PspPI GGNCC 1 cut(s) 1005
PspXI VCTCGAGB 1 cut(s) 737
PvuII CAGCTG 1 cut(s) 837
RsaI GTAC 2 cut(s) 206, 1033
RsaNI GTAC 2 cut(s) 205, 1032
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 5 cut(s) 62, 372, 582, 630, 759
SatI GCNGC 5 cut(s) 211, 378, 775, 826, 835
Sau3AI GATC 4 cut(s) 320, 356, 469, 618
Sau96I GGNCC 1 cut(s) 1005
SchI GAGTC 1 cut(s) 827
SduI GDGCHC 1 cut(s) 1017
SetI ASST 9 cut(s) 145, 630, 693, 726, 738, 759, 768, 839, 1022
SfaNI GCATC 1 cut(s) 802
SfcI CTRYAG 1 cut(s) 666
Sfr274I CTCGAG 1 cut(s) 737
SinI GGWCC 1 cut(s) 1005
SlaI CTCGAG 1 cut(s) 737
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 3 cut(s) 304, 641, 737
SmoI CTYRAG 3 cut(s) 304, 641, 737
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 3 cut(s) 59, 275, 325
SsiI CCGC 8 cut(s) 99, 210, 234, 774, 815, 828, 905, 1002
SspMI CTAG 2 cut(s) 93, 1050
TaaI ACNGT 4 cut(s) 272, 862, 938, 972
TaiI ACGT 2 cut(s) 768, 1022
TaqI TCGA 4 cut(s) 9, 267, 472, 738
TasI AATT 3 cut(s) 59, 275, 325
TatI WGTACW 1 cut(s) 1031
TauI GCSGC 2 cut(s) 213, 777
TfiI GAWTC 4 cut(s) 311, 448, 474, 950
Tru1I TTAA 5 cut(s) 62, 372, 582, 630, 759
Tru9I TTAA 5 cut(s) 62, 372, 582, 630, 759
TscAI CASTG 1 cut(s) 1015
TseFI GTSAC 1 cut(s) 657
TseI GCWGC 3 cut(s) 377, 825, 834
Tsp45I GTSAC 1 cut(s) 657
TspDTI ATGAA 5 cut(s) 83, 188, 461, 812, 1046
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 1 cut(s) 1015
Van91I CCANNNNNTGG 1 cut(s) 95
VneI GTGCAC 1 cut(s) 1013
VpaK11BI GGWCC 1 cut(s) 1005
XapI RAATTY 1 cut(s) 275
XceI RCATGY 2 cut(s) 746, 1069
XhoI CTCGAG 1 cut(s) 737
XspI CTAG 2 cut(s) 93, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.