Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006011

Physical Location & Seq

Genomic Coordinates Reverse (-)

10585888 .. 10586283

Gene Structure 396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1028600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAGAAGGTAAGATTGGATGTCAAGGAGAAGAAGAAGCGGCAGGCACGGCGAATAATGGAGGCGATTGAGGTCGGGATGGCAAAGCGGCTGAGGGCTAAAGAGGAAGAGATTGAAAAAATGGGGAAGCTGAATTGGGCGCTGGTTAAGTCGTTGTGCGTAGAGAACCAAATATGGCACAACCTAGCTCAGACCAACGAAGCCACTGTCAATGCCCTCTGCACCAACCTCGAGCAGGTCCTGGCTCACCAGGCCAAGGACGACGACAACCGGCAGAACAACGCCAATGCCGCTGCACTCATGGACAATGCCCAATTATGCTGTGGAAGCAGCGATGGGGACGAGGGTCGAAACGATGAAGTCGGGGAGTTAGACAGGTGGCGCACTGTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006915 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0012501 GO:0016567 GO:0019222 GO:0019538 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0036211 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043154 GO:0043170 GO:0043281 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051865 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

132

Amino Acids

14.94

Weight (kDa)

5.77

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79110 AT1G79110 AT1G79110 AT3G12920
fragaria_vesca	FvH4_3g15670 FvH4_3g15670
malus_domestica	MD01G1028600.v1.1 MD01G1030500.v1.1 MD05G1220500.v1.1 MD10G1202900.v1.1
prunus_persica	Prupe.4G139400_v2.0.a1 Prupe.4G139400_v2.0.a1
pyrus_communis	pycom05g20390 pycom05g20400 pycom10g17350
rosa_chinensis	RchiOBHm_Chr5g0026341
rosa_laevigata	RLG00000032922
rosa_multiflora	Rmu_co8156202.1_g000001 Rmu_sc0005764.1_g000002 Rmu_sc0025146.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053010
rosa_rugosa	Rorug05G0092400.1
rosa_samantha	Rh5AG185600 Rh5BG182400 Rh5CG201800 Rh5DG184200
rosa_wichuraiana	Rw5G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	390
AciI	CCGC	3 cut(s)	40, 88, 291
AfiI	CCNNNNNNNGG	2 cut(s)	235, 256
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	2 cut(s)	240, 249
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	2 cut(s)	130, 188
AluI	AGCT	2 cut(s)	130, 188
AlwNI	CAGNNNCTG	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	293, 330
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AspLEI	GCGC	2 cut(s)	142, 384
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	280, 342
BccI	CCATC	2 cut(s)	73, 329
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	2 cut(s)	242, 251
BfaI	CTAG	2 cut(s)	185, 394
BfoI	RGCGCY	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	5 cut(s)	41, 89, 291, 294, 331
BlsI	GCNGC	5 cut(s)	42, 90, 292, 295, 332
Bme1390I	CCNGG	2 cut(s)	242, 251
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	238
BmrFI	CCNGG	2 cut(s)	242, 251
BoxI	GACNNNNGTC	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 256
Bse118I	RCCGGY	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	242, 251
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	25, 84
BseLI	CCNNNNNNNGG	2 cut(s)	235, 256
BseMII	CTCAG	2 cut(s)	83, 203
BseXI	GCAGC	2 cut(s)	280, 342
BsgI	GTGCAG	2 cut(s)	205, 279
BshFI	GGCC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	235, 256
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	230
BspACI	CCGC	3 cut(s)	40, 88, 291
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	2 cut(s)	84, 202
BspMI	ACCTGC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	2 cut(s)	242, 251
Bst4CI	ACNGT	2 cut(s)	208, 388
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	92, 189
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstF5I	GGATG	2 cut(s)	25, 84
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	2 cut(s)	142, 384
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 251, 290, 327
BstNI	CCWGG	2 cut(s)	242, 251
BstPAI	GACNNNNGTC	1 cut(s)	345
BstSCI	CCNGG	2 cut(s)	240, 249
BstV1I	GCAGC	2 cut(s)	280, 342
BsuRI	GGCC	1 cut(s)	254
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	25, 84
BtsIMutI	CAGTG	2 cut(s)	204, 384
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	241
CfoI	GCGC	2 cut(s)	142, 384
Cfr10I	RCCGGY	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	238
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	7 cut(s)	91, 98, 130, 188, 203, 245, 254
CviKI_1	RGCY	7 cut(s)	91, 98, 130, 188, 203, 245, 254
DdeI	CTNAG	2 cut(s)	92, 189
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	240, 249
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	1 cut(s)	304
FaiI	YATR	3 cut(s)	175, 302, 319
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	1 cut(s)	300
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	5 cut(s)	41, 89, 291, 294, 331
FokI	GGATG	2 cut(s)	32, 91
Fsp4HI	GCNGC	5 cut(s)	41, 89, 291, 294, 331
FspBI	CTAG	2 cut(s)	185, 394
GlaI	GCGC	2 cut(s)	141, 383
GluI	GCNGC	5 cut(s)	41, 89, 291, 294, 331
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	271
HhaI	GCGC	2 cut(s)	142, 384
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	2 cut(s)	140, 382
HinP1I	GCGC	2 cut(s)	140, 382
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	208, 388
HpyCH4V	TGCA	2 cut(s)	222, 296
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 251, 290, 327
HpyF3I	CTNAG	2 cut(s)	92, 189
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	2 cut(s)	140, 382
LpnPI	CCDG	9 cut(s)	29, 128, 221, 227, 236, 254, 263, 284, 361
Lsp1109I	GCAGC	2 cut(s)	280, 342
MaeI	CTAG	2 cut(s)	185, 394
MboII	GAAGA	3 cut(s)	43, 46, 119
MluCI	AATT	2 cut(s)	133, 314
MnlI	CCTC	7 cut(s)	55, 64, 87, 97, 227, 239, 337
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	2 cut(s)	242, 251
MvaI	CCWGG	2 cut(s)	242, 251
MwoI	GCNNNNNNNGC	4 cut(s)	49, 251, 290, 327
NlaIII	CATG	1 cut(s)	304
PaeR7I	CTCGAG	1 cut(s)	230
PkrI	GCNGC	5 cut(s)	42, 90, 292, 295, 332
PpuMI	RGGWCCY	1 cut(s)	238
PshAI	GACNNNNGTC	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	2 cut(s)	240, 249
PspGI	CCWGG	2 cut(s)	240, 249
PspPI	GGNCC	1 cut(s)	238
PspPPI	RGGWCCY	1 cut(s)	238
PspXI	VCTCGAGB	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	5 cut(s)	41, 89, 291, 294, 331
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	242, 251
SetI	ASST	8 cut(s)	12, 75, 132, 186, 190, 231, 240, 380
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	133, 314
SsiI	CCGC	3 cut(s)	40, 88, 291
SspMI	CTAG	2 cut(s)	185, 394
StyD4I	CCNGG	2 cut(s)	240, 249
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	208, 388
TaqI	TCGA	2 cut(s)	231, 349
TasI	AATT	2 cut(s)	133, 314
TauI	GCSGC	3 cut(s)	43, 91, 293
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	211, 391
TseI	GCWGC	2 cut(s)	293, 330
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	2 cut(s)	211, 391
VpaK11BI	GGWCC	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XhoI	CTCGAG	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	2 cut(s)	185, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.