Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006011

Physical Location & Seq

Genomic Coordinates Forward (+)

73836342 .. 73837969

Gene Structure 1628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00053010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCCGTTCAAGCTCGCCACCTCAATCTCTTCCCCTCTCAACAACTCCTCTGCAACAACAGTGAAATCATGAACCCGGTTCAGGGAAACGGGGGCATGTATAGTACCCAGATTGGGTACGGCGTGCCATTGATGACCGGCGGCGTGGTGGCGACGGAGGCTCTGCTTCCGGCGTATAATAATTCTGTGATGAACGATTCGATGCTTCCGAAAACGACGCCGTGCGCGGCGGCGATGCAGTCGGACAGTGGGCTCACCTACAACGTCCCGATCAGTACGTCTCTTCCAAGAAAGCGCTCCCGGGTCGACTCGATCAACCCGAACCCGAACCTGTTCTCGTACCCGAGTGCTCCGACGAGCCATCATTACAAGAACAACAACGACAACAACTCATTCTCGTTTCTCGGCGAGGACATTTCTCTGCAAATCCAGCAGCAGCAGTTCGACATCGACCGCCTCATTTCGCAACACATGGAGAAGGTGAGGTTGGAGATTGAAGAAAAGCGAAAGAGGCAAGCGAGGAGGATAATCGAGTCCATAGAAATGGGGATGATGAAGCGGCTGAGAGCCAAAGAGGTCGAGATCGAGAAAATCGGGAAGATGAATTGGGCTCTGGAAGAGAAGGTGAAGTCACTCTGCATAGAGAATCAAATATGGCGCGACTTGGCCCAGACCAACGAGGCCACCGCCAATGCTCTCCGGACCAACCTCGAACAAGTGCTGGCCCAGGTGAAAGTCGAGCCCAACAATCACAACCAAAACGACGCCGTGGCGGCGGCGCTGATGGACGACGCGCAGTCGTGCTGCGGGAGCAGCGGCGGAAACGACGAGGTAGGGTGGCGGGCGGTGAAGGGGGAGGAAGGGACAAGCGGGTCGGGTACAGCAAGTGGGAGTAGGTGGTGTAGAAATTGCGGGAAGGAGGAATCGTGTGTGTTGCTGTTGCCGTGTAGGCACCTGTGCTTGTGTACGGTCTGTGGGTCATCCCTTCACACTTGCCCAGTCTGTAAATCCACCAAGAACGCTAGTGTGCATGTTAACATGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006915 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0012501 GO:0016567 GO:0019222 GO:0019538 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0036211 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043154 GO:0043170 GO:0043281 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051865 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

348

Amino Acids

38.31

Weight (kDa)

7.04

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	301 - 338	1.3e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79110 AT1G79110 AT1G79110 AT3G12920
fragaria_vesca	FvH4_3g15670 FvH4_3g15670
malus_domestica	MD01G1028600.v1.1 MD01G1030500.v1.1 MD05G1220500.v1.1 MD10G1202900.v1.1
prunus_persica	Prupe.4G139400_v2.0.a1 Prupe.4G139400_v2.0.a1
pyrus_communis	pycom05g20390 pycom05g20400 pycom10g17350
rosa_chinensis	RchiOBHm_Chr5g0026341
rosa_laevigata	RLG00000032922
rosa_multiflora	Rmu_co8156202.1_g000001 Rmu_sc0005764.1_g000002 Rmu_sc0025146.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053010
rosa_rugosa	Rorug05G0092400.1
rosa_samantha	Rh5AG185600 Rh5BG182400 Rh5CG201800 Rh5DG184200
rosa_wichuraiana	Rw5G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	871
AccB1I	GGYRCC	1 cut(s)	951
AccI	GTMKAC	1 cut(s)	306
AccII	CGCG	3 cut(s)	227, 660, 794
AccIII	TCCGGA	1 cut(s)	699
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	218, 765
AfaI	GTAC	6 cut(s)	106, 119, 277, 341, 880, 967
AfeI	AGCGCT	1 cut(s)	296
AfiI	CCNNNNNNNGG	3 cut(s)	82, 83, 114
AflIII	ACRYGT	1 cut(s)	1038
AgsI	TTSAA	2 cut(s)	11, 497
AhdI	GACNNNNNGTC	1 cut(s)	796
AjnI	CCWGG	1 cut(s)	726
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	1 cut(s)	285
Ama87I	CYCGRG	2 cut(s)	300, 343
Aor13HI	TCCGGA	1 cut(s)	699
Aor51HI	AGCGCT	1 cut(s)	296
AoxI	GGCC	4 cut(s)	3, 666, 681, 723
ApeKI	GCWGC	4 cut(s)	433, 436, 804, 813
Asp700I	GAANNNNTTC	1 cut(s)	332
AspLEI	GCGC	5 cut(s)	227, 297, 660, 781, 796
AspS9I	GGNCC	3 cut(s)	667, 702, 724
AsuC2I	CCSGG	3 cut(s)	77, 301, 302
AsuHPI	GGTGA	5 cut(s)	247, 493, 637, 742, 859
AvaI	CYCGRG	2 cut(s)	300, 343
AvaII	GGWCC	1 cut(s)	702
BanI	GGYRCC	1 cut(s)	951
BanII	GRGCYC	3 cut(s)	255, 613, 744
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	4 cut(s)	445, 448, 791, 825
BccI	CCATC	2 cut(s)	369, 778
BceAI	ACGGC	4 cut(s)	136, 205, 752, 928
BciT130I	CCWGG	1 cut(s)	728
BcnI	CCSGG	3 cut(s)	77, 301, 302
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	1023
BfoI	RGCGCY	2 cut(s)	298, 782
BglI	GCCNNNNNGGC	2 cut(s)	773, 949
Bme1390I	CCNGG	4 cut(s)	77, 301, 302, 728
Bme18I	GGWCC	1 cut(s)	702
BmeRI	GACNNNNNGTC	1 cut(s)	796
BmeT110I	CYCGRG	2 cut(s)	300, 343
BmgT120I	GGNCC	3 cut(s)	667, 702, 724
BmiI	GGNNCC	1 cut(s)	953
BmrFI	CCNGG	4 cut(s)	77, 301, 302, 728
BmrI	ACTGGG	1 cut(s)	992
BmsI	GCATC	2 cut(s)	192, 225
BmuI	ACTGGG	1 cut(s)	992
BpuMI	CCSGG	3 cut(s)	77, 301, 302
BsaHI	GRCGYC	2 cut(s)	218, 765
BsaJI	CCNNGG	3 cut(s)	300, 726, 768
BsaWI	WCCGGW	1 cut(s)	699
BsaXI	ACNNNNNCTCC	2 cut(s)	911, 941
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 83, 114
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	998
BseAI	TCCGGA	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	728
BseDI	CCNNGG	3 cut(s)	300, 726, 768
BseGI	GGATG	2 cut(s)	555, 980
BseLI	CCNNNNNNNGG	3 cut(s)	82, 83, 114
BseMII	CTCAG	1 cut(s)	554
BseNI	ACTGG	1 cut(s)	998
BseRI	GAGGAG	2 cut(s)	38, 535
BseXI	GCAGC	4 cut(s)	445, 448, 791, 825
Bsh1236I	CGCG	3 cut(s)	227, 660, 794
Bsh1285I	CGRYCG	1 cut(s)	454
BshFI	GGCC	4 cut(s)	5, 668, 683, 725
BshNI	GGYRCC	1 cut(s)	951
BsiEI	CGRYCG	1 cut(s)	454
BsiHKAI	GWGCWC	1 cut(s)	352
BsiHKCI	CYCGRG	2 cut(s)	300, 343
BsiSI	CCGG	5 cut(s)	77, 138, 170, 301, 700
BslFI	GGGAC	2 cut(s)	251, 877
BslI	CCNNNNNNNGG	3 cut(s)	82, 83, 114
BsmAI	GTCTC	1 cut(s)	285
BsmBI	CGTCTC	1 cut(s)	285
BsmFI	GGGAC	2 cut(s)	251, 877
BsnI	GGCC	4 cut(s)	5, 668, 683, 725
BsoBI	CYCGRG	2 cut(s)	300, 343
Bsp1286I	GDGCHC	4 cut(s)	255, 352, 613, 744
Bsp13I	TCCGGA	1 cut(s)	699
Bsp143I	GATC	3 cut(s)	270, 312, 582
BspANI	GGCC	4 cut(s)	5, 668, 683, 725
BspCNI	CTCAG	1 cut(s)	555
BspEI	TCCGGA	1 cut(s)	699
BspFNI	CGCG	3 cut(s)	227, 660, 794
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	953
BspT107I	GGYRCC	1 cut(s)	951
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	998
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	3 cut(s)	300, 726, 768
BssMI	GATC	3 cut(s)	270, 312, 582
BssNI	GRCGYC	2 cut(s)	218, 765
Bst2UI	CCWGG	1 cut(s)	728
Bst4CI	ACNGT	3 cut(s)	62, 248, 970
Bst6I	CTCTTC	3 cut(s)	35, 288, 612
BstACI	GRCGYC	2 cut(s)	218, 765
BstC8I	GCNNGC	5 cut(s)	16, 125, 516, 723, 843
BstDEI	CTNAG	2 cut(s)	563, 1044
BstDSI	CCRYGG	1 cut(s)	768
BstF5I	GGATG	2 cut(s)	555, 980
BstFNI	CGCG	3 cut(s)	227, 660, 794
BstH2I	RGCGCY	2 cut(s)	298, 782
BstHHI	GCGC	5 cut(s)	227, 297, 660, 781, 796
BstKTI	GATC	3 cut(s)	273, 315, 585
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	3 cut(s)	270, 312, 582
BstMCI	CGRYCG	1 cut(s)	454
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 158, 430, 511, 773, 810, 813, 949
BstNI	CCWGG	1 cut(s)	728
BstNSI	RCATGY	3 cut(s)	100, 1034, 1042
BstSCI	CCNGG	4 cut(s)	75, 299, 300, 726
BstUI	CGCG	3 cut(s)	227, 660, 794
BstV1I	GCAGC	4 cut(s)	445, 448, 791, 825
BstXI	CCANNNNNNTGG	1 cut(s)	544
BsuRI	GGCC	4 cut(s)	5, 668, 683, 725
BtgI	CCRYGG	1 cut(s)	768
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	555, 980
BtsIMutI	CAGTG	2 cut(s)	67, 253
Cac8I	GCNNGC	5 cut(s)	16, 125, 516, 723, 843
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	5 cut(s)	227, 297, 660, 781, 796
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	667, 702, 724
Cfr9I	CCCGGG	1 cut(s)	300
CseI	GACGC	3 cut(s)	226, 773, 800
Csp6I	GTAC	6 cut(s)	105, 118, 276, 340, 879, 966
CviAII	CATG	5 cut(s)	70, 97, 472, 1031, 1039
CviQI	GTAC	6 cut(s)	105, 118, 276, 340, 879, 966
DdeI	CTNAG	2 cut(s)	563, 1044
DpnI	GATC	3 cut(s)	272, 314, 584
DpnII	GATC	3 cut(s)	270, 312, 582
DrdI	GACNNNNNNGTC	1 cut(s)	871
DriI	GACNNNNNGTC	1 cut(s)	796
DseDI	GACNNNNNNGTC	1 cut(s)	871
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	35, 288, 612
Eam1105I	GACNNNNNGTC	1 cut(s)	796
EarI	CTCTTC	3 cut(s)	35, 288, 612
EciI	GGCGGA	1 cut(s)	834
Eco24I	GRGCYC	3 cut(s)	255, 613, 744
Eco47I	GGWCC	1 cut(s)	702
Eco47III	AGCGCT	1 cut(s)	296
Eco88I	CYCGRG	2 cut(s)	300, 343
EcoRII	CCWGG	1 cut(s)	726
EcoT38I	GRGCYC	3 cut(s)	255, 613, 744
Esp3I	CGTCTC	1 cut(s)	285
FaeI	CATG	5 cut(s)	73, 100, 475, 1034, 1042
FaqI	GGGAC	2 cut(s)	251, 877
FatI	CATG	5 cut(s)	69, 96, 471, 1030, 1038
FauI	CCCGC	4 cut(s)	800, 834, 863, 905
FblI	GTMKAC	1 cut(s)	306
FokI	GGATG	2 cut(s)	562, 967
FriOI	GRGCYC	3 cut(s)	255, 613, 744
FspBI	CTAG	1 cut(s)	1023
GlaI	GCGC	5 cut(s)	226, 296, 659, 780, 795
HaeII	RGCGCY	2 cut(s)	298, 782
HaeIII	GGCC	4 cut(s)	5, 668, 683, 725
HapII	CCGG	5 cut(s)	77, 138, 170, 301, 700
HgaI	GACGC	3 cut(s)	226, 773, 800
HhaI	GCGC	5 cut(s)	227, 297, 660, 781, 796
Hin1I	GRCGYC	2 cut(s)	218, 765
Hin1II	CATG	5 cut(s)	73, 100, 475, 1034, 1042
Hin6I	GCGC	5 cut(s)	225, 295, 658, 779, 794
HinP1I	GCGC	5 cut(s)	225, 295, 658, 779, 794
HincII	GTYRAC	2 cut(s)	307, 1036
HindII	GTYRAC	2 cut(s)	307, 1036
HinfI	GANTC	5 cut(s)	197, 308, 533, 646, 923
HpaI	GTTAAC	1 cut(s)	1036
HpaII	CCGG	5 cut(s)	77, 138, 170, 301, 700
HphI	GGTGA	5 cut(s)	247, 493, 637, 742, 859
Hpy166II	GTNNAC	3 cut(s)	307, 966, 1036
Hpy188I	TCNGA	3 cut(s)	210, 244, 354
Hpy188III	TCNNGA	7 cut(s)	70, 268, 580, 586, 595, 614, 700
Hpy8I	GTNNAC	3 cut(s)	307, 966, 1036
Hpy99I	CGWCG	6 cut(s)	157, 220, 358, 767, 794, 830
HpyAV	CCTTC	6 cut(s)	472, 616, 844, 854, 910, 995
HpyCH4III	ACNGT	3 cut(s)	62, 248, 970
HpyCH4IV	ACGT	2 cut(s)	264, 278
HpyCH4V	TGCA	5 cut(s)	54, 238, 424, 639, 1030
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 158, 430, 511, 773, 810, 813, 949
HpyF3I	CTNAG	2 cut(s)	563, 1044
HpySE526I	ACGT	2 cut(s)	264, 278
Hsp92I	GRCGYC	2 cut(s)	218, 765
Hsp92II	CATG	5 cut(s)	73, 100, 475, 1034, 1042
HspAI	GCGC	5 cut(s)	225, 295, 658, 779, 794
Kpn2I	TCCGGA	1 cut(s)	699
KspAI	GTTAAC	1 cut(s)	1036
Kzo9I	GATC	3 cut(s)	270, 312, 582
LmnI	GCTCC	3 cut(s)	302, 355, 810
Lsp1109I	GCAGC	4 cut(s)	445, 448, 791, 825
LweI	GCATC	2 cut(s)	192, 225
MaeI	CTAG	1 cut(s)	1023
MaeII	ACGT	2 cut(s)	264, 278
MaeIII	GTNAC	1 cut(s)	630
MalI	GATC	3 cut(s)	272, 314, 584
MboI	GATC	3 cut(s)	270, 312, 582
MboII	GAAGA	5 cut(s)	22, 275, 509, 610, 629
MhlI	GDGCHC	4 cut(s)	255, 352, 613, 744
MluCI	AATT	3 cut(s)	181, 604, 907
MlyI	GAGTC	2 cut(s)	302, 542
MmeI	TCCRAC	3 cut(s)	222, 377, 468
MroI	TCCGGA	1 cut(s)	699
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	1 cut(s)	1035
MslI	CAYNNNNRTG	1 cut(s)	542
MspA1I	CMGCKG	1 cut(s)	816
MspI	CCGG	5 cut(s)	77, 138, 170, 301, 700
MspR9I	CCNGG	4 cut(s)	77, 301, 302, 728
MvaI	CCWGG	1 cut(s)	728
MvnI	CGCG	3 cut(s)	227, 660, 794
MwoI	GCNNNNNNNGC	8 cut(s)	11, 158, 430, 511, 773, 810, 813, 949
NciI	CCSGG	3 cut(s)	77, 301, 302
NdeII	GATC	3 cut(s)	270, 312, 582
NlaIII	CATG	5 cut(s)	73, 100, 475, 1034, 1042
NlaIV	GGNNCC	1 cut(s)	953
NmeAIII	GCCGAG	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	630
NspI	RCATGY	3 cut(s)	100, 1034, 1042
PagI	TCATGA	1 cut(s)	69
PciI	ACATGT	1 cut(s)	1038
PcsI	WCGNNNNNNNCGW	2 cut(s)	206, 317
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	3 cut(s)	197, 646, 923
PleI	GAGTC	2 cut(s)	302, 541
PpsI	GAGTC	2 cut(s)	302, 541
PscI	ACATGT	1 cut(s)	1038
Psp6I	CCWGG	1 cut(s)	726
PspGI	CCWGG	1 cut(s)	726
PspN4I	GGNNCC	1 cut(s)	953
PspPI	GGNCC	3 cut(s)	667, 702, 724
RsaI	GTAC	6 cut(s)	106, 119, 277, 341, 880, 967
RsaNI	GTAC	6 cut(s)	105, 118, 276, 340, 879, 966
RseI	CAYNNNNRTG	1 cut(s)	542
SalI	GTCGAC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	1035
Sau3AI	GATC	3 cut(s)	270, 312, 582
Sau96I	GGNCC	3 cut(s)	667, 702, 724
SchI	GAGTC	2 cut(s)	302, 542
ScrFI	CCNGG	4 cut(s)	77, 301, 302, 728
SduI	GDGCHC	4 cut(s)	255, 352, 613, 744
SfaNI	GCATC	2 cut(s)	192, 225
SinI	GGWCC	1 cut(s)	702
SmaI	CCCGGG	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	542
Sse9I	AATT	3 cut(s)	181, 604, 907
SspMI	CTAG	1 cut(s)	1023
StyD4I	CCNGG	4 cut(s)	75, 299, 300, 726
TaaI	ACNGT	3 cut(s)	62, 248, 970
TaiI	ACGT	2 cut(s)	267, 281
TasI	AATT	3 cut(s)	181, 604, 907
TauI	GCSGC	7 cut(s)	144, 230, 233, 562, 776, 779, 819
TfiI	GAWTC	3 cut(s)	197, 646, 923
Tru1I	TTAA	1 cut(s)	1035
Tru9I	TTAA	1 cut(s)	1035
TscAI	CASTG	2 cut(s)	67, 253
TseFI	GTSAC	1 cut(s)	630
TseI	GCWGC	4 cut(s)	433, 436, 804, 813
Tsp45I	GTSAC	1 cut(s)	630
TspDTI	ATGAA	4 cut(s)	86, 206, 569, 617
TspGWI	ACGGA	1 cut(s)	170
TspMI	CCCGGG	1 cut(s)	300
TspRI	CASTG	2 cut(s)	67, 253
VpaK11BI	GGWCC	1 cut(s)	702
XceI	RCATGY	3 cut(s)	100, 1034, 1042
XmaI	CCCGGG	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	1 cut(s)	1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.