Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006011

Physical Location & Seq

Genomic Coordinates Reverse (-)

21225870 .. 21229259

Gene Structure 3390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG185600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAACCCGGTCCAGGGAAACGGGGGCATGTATAGTACTCAGATTGGGTACGGCGTGCCATTGATGACCGGTGGAGTTGTGGCGACGGAGGCTCTGCTTCCGGCGTATAATAATTCTGTGATGAACGATTCGATGCTTCCGAAAACGACGCCGTGCGCGGCGGCGATGCAGTCGGATAGTGGGCTCACCTACAACGTCCCGATCAGTACGAGTCTCCCAAGAAAGCGCTCCCGGGTCGACTCGATCAACCCGAACCCGAACTTGTTCTCCTACCCGAGTGCTCCGGCGAGCCATCATTACAAGAACAACAACGACAACCACAACTCATTCTCGTTTCTCGGCGAGGACATTTCTCTGCAAATCCAGCAGCAGCAGTTCGACATCGACCGCCTCATTTCGCAACACATGGAGAAGGTGAGGTTAGAGATTGAAGAAAAGCGAAAGAGGCAAGCGAGGAGGATAATCGAGTCCATAGAAATGGGGATGATGAAGCGGCTGAGAGCCAAAGAGGTCGAGATCGAGAAAATCGGGAAGATGAATTGGGCTCTGGAAGAGAAGGTGAAGTCACTCTGCATAGAGAATCAAATATGGCGCGACTTGGCCCAGACCAACGAGGCCACCGCCAATGCTCTCCGGACCAACCTCGAACAAGTCCTGGCCCAGGTGAAAGTCGAGCCCAACAACAACCAAAACGACGCCGTGGCGGCGGCGCTGATGGACGACGCGCAGTCGTGCTGCGGGAGCAGCGGCGGAAACGACGAGGTAGGGTGGCGGGCGGTGAAGGGGGAGGAAGGGACAAGCGGGTCGGGTACAGCAAGTGGGAGTAGGTGGTGCAGGAATTGCGGCAAGGAGGAATCGTGCGTGTTGCTGTTGCCGTGTAGGCACCTGTGCTTGTGTACGGTCTGTGGGTCATCCCTCCACACTTGCCCAGTCTGTAAATCCACCAAGAACGCTAGTGTGCATGTTAACATGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006915 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0012501 GO:0016567 GO:0019222 GO:0019538 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0036211 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043154 GO:0043170 GO:0043281 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051865 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

325

Amino Acids

35.67

Weight (kDa)

7.01

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	278 - 315	1.2e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79110 AT1G79110 AT1G79110 AT3G12920
fragaria_vesca	FvH4_3g15670 FvH4_3g15670
malus_domestica	MD01G1028600.v1.1 MD01G1030500.v1.1 MD05G1220500.v1.1 MD10G1202900.v1.1
prunus_persica	Prupe.4G139400_v2.0.a1 Prupe.4G139400_v2.0.a1
pyrus_communis	pycom05g20390 pycom05g20400 pycom10g17350
rosa_chinensis	RchiOBHm_Chr5g0026341
rosa_laevigata	RLG00000032922
rosa_multiflora	Rmu_co8156202.1_g000001 Rmu_sc0005764.1_g000002 Rmu_sc0025146.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053010
rosa_rugosa	Rorug05G0092400.1
rosa_samantha	Rh5AG185600 Rh5BG182400 Rh5CG201800 Rh5DG184200
rosa_wichuraiana	Rw5G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	802
AccB1I	GGYRCC	1 cut(s)	882
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	3 cut(s)	158, 594, 725
AccIII	TCCGGA	1 cut(s)	633
AcyI	GRCGYC	2 cut(s)	149, 696
AfaI	GTAC	5 cut(s)	37, 50, 208, 811, 898
AfeI	AGCGCT	1 cut(s)	227
AfiI	CCNNNNNNNGG	3 cut(s)	13, 14, 661
AflIII	ACRYGT	1 cut(s)	969
AgeI	ACCGGT	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	431
AhdI	GACNNNNNGTC	1 cut(s)	727
AjnI	CCWGG	3 cut(s)	12, 654, 660
AloI	GAACNNNNNNTCC	2 cut(s)	251, 283
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	218
Ama87I	CYCGRG	2 cut(s)	231, 274
Aor13HI	TCCGGA	1 cut(s)	633
Aor51HI	AGCGCT	1 cut(s)	227
AoxI	GGCC	3 cut(s)	600, 615, 657
ApeKI	GCWGC	4 cut(s)	367, 370, 735, 744
AsiGI	ACCGGT	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	5 cut(s)	158, 228, 594, 712, 727
AspS9I	GGNCC	4 cut(s)	10, 601, 636, 658
AsuC2I	CCSGG	3 cut(s)	8, 232, 233
AsuHPI	GGTGA	5 cut(s)	178, 427, 571, 676, 790
AvaI	CYCGRG	2 cut(s)	231, 274
AvaII	GGWCC	2 cut(s)	10, 636
BanI	GGYRCC	1 cut(s)	882
BanII	GRGCYC	3 cut(s)	186, 547, 678
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	4 cut(s)	379, 382, 722, 756
BccI	CCATC	2 cut(s)	300, 709
BceAI	ACGGC	4 cut(s)	67, 136, 683, 859
BciT130I	CCWGG	3 cut(s)	14, 656, 662
BcnI	CCSGG	3 cut(s)	8, 232, 233
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	954
BfoI	RGCGCY	2 cut(s)	229, 713
BglI	GCCNNNNNGGC	2 cut(s)	704, 880
BmcAI	AGTACT	1 cut(s)	37
Bme1390I	CCNGG	6 cut(s)	8, 14, 232, 233, 656, 662
Bme18I	GGWCC	2 cut(s)	10, 636
BmeRI	GACNNNNNGTC	1 cut(s)	727
BmeT110I	CYCGRG	2 cut(s)	231, 274
BmgT120I	GGNCC	4 cut(s)	10, 601, 636, 658
BmiI	GGNNCC	1 cut(s)	884
BmrFI	CCNGG	6 cut(s)	8, 14, 232, 233, 656, 662
BmrI	ACTGGG	1 cut(s)	923
BmsI	GCATC	2 cut(s)	123, 156
BmuI	ACTGGG	1 cut(s)	923
BpuMI	CCSGG	3 cut(s)	8, 232, 233
BsaHI	GRCGYC	2 cut(s)	149, 696
BsaJI	CCNNGG	4 cut(s)	13, 231, 660, 699
BsaWI	WCCGGW	2 cut(s)	68, 633
BsaXI	ACNNNNNCTCC	4 cut(s)	251, 281, 842, 872
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 14, 661
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	929
BseAI	TCCGGA	1 cut(s)	633
BseBI	CCWGG	3 cut(s)	14, 656, 662
BseDI	CCNNGG	4 cut(s)	13, 231, 660, 699
BseGI	GGATG	2 cut(s)	489, 911
BseLI	CCNNNNNNNGG	3 cut(s)	13, 14, 661
BseMII	CTCAG	2 cut(s)	53, 488
BseNI	ACTGG	1 cut(s)	929
BseRI	GAGGAG	1 cut(s)	469
BseXI	GCAGC	4 cut(s)	379, 382, 722, 756
BsgI	GTGCAG	1 cut(s)	853
Bsh1236I	CGCG	3 cut(s)	158, 594, 725
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	3 cut(s)	602, 617, 659
BshNI	GGYRCC	1 cut(s)	882
BshTI	ACCGGT	1 cut(s)	68
BsiEI	CGRYCG	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	283
BsiHKCI	CYCGRG	2 cut(s)	231, 274
BsiSI	CCGG	6 cut(s)	8, 69, 101, 232, 284, 634
BslFI	GGGAC	2 cut(s)	182, 808
BslI	CCNNNNNNNGG	3 cut(s)	13, 14, 661
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	2 cut(s)	182, 808
BsnI	GGCC	3 cut(s)	602, 617, 659
BsoBI	CYCGRG	2 cut(s)	231, 274
Bsp1286I	GDGCHC	4 cut(s)	186, 283, 547, 678
Bsp13I	TCCGGA	1 cut(s)	633
Bsp143I	GATC	3 cut(s)	201, 243, 516
BspANI	GGCC	3 cut(s)	602, 617, 659
BspCNI	CTCAG	2 cut(s)	52, 489
BspEI	TCCGGA	1 cut(s)	633
BspFNI	CGCG	3 cut(s)	158, 594, 725
BspLI	GGNNCC	1 cut(s)	884
BspT107I	GGYRCC	1 cut(s)	882
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	929
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	4 cut(s)	13, 231, 660, 699
BssMI	GATC	3 cut(s)	201, 243, 516
BssNI	GRCGYC	2 cut(s)	149, 696
Bst2UI	CCWGG	3 cut(s)	14, 656, 662
Bst4CI	ACNGT	1 cut(s)	901
Bst6I	CTCTTC	1 cut(s)	546
BstACI	GRCGYC	2 cut(s)	149, 696
BstAPI	GCANNNNNTGC	1 cut(s)	840
BstC8I	GCNNGC	4 cut(s)	56, 289, 450, 774
BstDEI	CTNAG	3 cut(s)	39, 497, 975
BstDSI	CCRYGG	1 cut(s)	699
BstENI	CCTNNNNNAGG	1 cut(s)	659
BstF5I	GGATG	2 cut(s)	489, 911
BstFNI	CGCG	3 cut(s)	158, 594, 725
BstH2I	RGCGCY	2 cut(s)	229, 713
BstHHI	GCGC	5 cut(s)	158, 228, 594, 712, 727
BstKTI	GATC	3 cut(s)	204, 246, 519
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	3 cut(s)	201, 243, 516
BstMCI	CGRYCG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 364, 445, 704, 741, 744, 840, 880
BstNI	CCWGG	3 cut(s)	14, 656, 662
BstNSI	RCATGY	3 cut(s)	31, 965, 973
BstSCI	CCNGG	6 cut(s)	6, 12, 230, 231, 654, 660
BstUI	CGCG	3 cut(s)	158, 594, 725
BstV1I	GCAGC	4 cut(s)	379, 382, 722, 756
BstXI	CCANNNNNNTGG	1 cut(s)	478
BsuRI	GGCC	3 cut(s)	602, 617, 659
BtgI	CCRYGG	1 cut(s)	699
BtgZI	GCGATG	1 cut(s)	179
BtsCI	GGATG	2 cut(s)	489, 911
Cac8I	GCNNGC	4 cut(s)	56, 289, 450, 774
CfoI	GCGC	5 cut(s)	158, 228, 594, 712, 727
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	4 cut(s)	10, 601, 636, 658
Cfr9I	CCCGGG	1 cut(s)	231
CseI	GACGC	3 cut(s)	157, 704, 731
Csp6I	GTAC	5 cut(s)	36, 49, 207, 810, 897
CspAI	ACCGGT	1 cut(s)	68
CviAII	CATG	4 cut(s)	28, 406, 962, 970
CviQI	GTAC	5 cut(s)	36, 49, 207, 810, 897
DdeI	CTNAG	3 cut(s)	39, 497, 975
DpnI	GATC	3 cut(s)	203, 245, 518
DpnII	GATC	3 cut(s)	201, 243, 516
DrdI	GACNNNNNNGTC	1 cut(s)	802
DriI	GACNNNNNGTC	1 cut(s)	727
DseDI	GACNNNNNNGTC	1 cut(s)	802
Eam1104I	CTCTTC	1 cut(s)	546
Eam1105I	GACNNNNNGTC	1 cut(s)	727
EarI	CTCTTC	1 cut(s)	546
EciI	GGCGGA	1 cut(s)	765
Eco24I	GRGCYC	3 cut(s)	186, 547, 678
Eco47I	GGWCC	2 cut(s)	10, 636
Eco47III	AGCGCT	1 cut(s)	227
Eco88I	CYCGRG	2 cut(s)	231, 274
EcoNI	CCTNNNNNAGG	1 cut(s)	659
EcoRII	CCWGG	3 cut(s)	12, 654, 660
EcoT38I	GRGCYC	3 cut(s)	186, 547, 678
FaeI	CATG	4 cut(s)	31, 409, 965, 973
FaiI	YATR	9 cut(s)	29, 33, 108, 407, 473, 575, 589, 963, 971
FaqI	GGGAC	2 cut(s)	182, 808
FatI	CATG	4 cut(s)	27, 405, 961, 969
FauI	CCCGC	3 cut(s)	731, 765, 794
FblI	GTMKAC	1 cut(s)	237
FokI	GGATG	2 cut(s)	496, 898
FriOI	GRGCYC	3 cut(s)	186, 547, 678
FspBI	CTAG	1 cut(s)	954
GlaI	GCGC	5 cut(s)	157, 227, 593, 711, 726
HaeII	RGCGCY	2 cut(s)	229, 713
HaeIII	GGCC	3 cut(s)	602, 617, 659
HapII	CCGG	6 cut(s)	8, 69, 101, 232, 284, 634
HgaI	GACGC	3 cut(s)	157, 704, 731
HhaI	GCGC	5 cut(s)	158, 228, 594, 712, 727
Hin1I	GRCGYC	2 cut(s)	149, 696
Hin1II	CATG	4 cut(s)	31, 409, 965, 973
Hin6I	GCGC	5 cut(s)	156, 226, 592, 710, 725
HinP1I	GCGC	5 cut(s)	156, 226, 592, 710, 725
HincII	GTYRAC	2 cut(s)	238, 967
HindII	GTYRAC	2 cut(s)	238, 967
HinfI	GANTC	6 cut(s)	128, 211, 239, 467, 580, 854
HpaI	GTTAAC	1 cut(s)	967
HpaII	CCGG	6 cut(s)	8, 69, 101, 232, 284, 634
HphI	GGTGA	5 cut(s)	178, 427, 571, 676, 790
Hpy166II	GTNNAC	3 cut(s)	238, 897, 967
Hpy188I	TCNGA	3 cut(s)	42, 141, 175
Hpy188III	TCNNGA	6 cut(s)	199, 514, 520, 529, 548, 634
Hpy8I	GTNNAC	3 cut(s)	238, 897, 967
Hpy99I	CGWCG	5 cut(s)	88, 151, 698, 725, 761
HpyAV	CCTTC	4 cut(s)	406, 550, 775, 785
HpyCH4III	ACNGT	1 cut(s)	901
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	5 cut(s)	169, 358, 573, 834, 961
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 364, 445, 704, 741, 744, 840, 880
HpyF3I	CTNAG	3 cut(s)	39, 497, 975
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	2 cut(s)	149, 696
Hsp92II	CATG	4 cut(s)	31, 409, 965, 973
HspAI	GCGC	5 cut(s)	156, 226, 592, 710, 725
Kpn2I	TCCGGA	1 cut(s)	633
KspAI	GTTAAC	1 cut(s)	967
Kzo9I	GATC	3 cut(s)	201, 243, 516
LmnI	GCTCC	3 cut(s)	233, 286, 741
Lsp1109I	GCAGC	4 cut(s)	379, 382, 722, 756
LweI	GCATC	2 cut(s)	123, 156
MaeI	CTAG	1 cut(s)	954
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	564
MalI	GATC	3 cut(s)	203, 245, 518
MboI	GATC	3 cut(s)	201, 243, 516
MboII	GAAGA	3 cut(s)	443, 544, 563
MhlI	GDGCHC	4 cut(s)	186, 283, 547, 678
MluCI	AATT	3 cut(s)	112, 538, 838
MlyI	GAGTC	3 cut(s)	220, 233, 476
MmeI	TCCRAC	1 cut(s)	153
MroI	TCCGGA	1 cut(s)	633
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	966
MslI	CAYNNNNRTG	1 cut(s)	476
MspA1I	CMGCKG	1 cut(s)	747
MspI	CCGG	6 cut(s)	8, 69, 101, 232, 284, 634
MspR9I	CCNGG	6 cut(s)	8, 14, 232, 233, 656, 662
MvaI	CCWGG	3 cut(s)	14, 656, 662
MvnI	CGCG	3 cut(s)	158, 594, 725
MwoI	GCNNNNNNNGC	8 cut(s)	89, 364, 445, 704, 741, 744, 840, 880
NciI	CCSGG	3 cut(s)	8, 232, 233
NdeII	GATC	3 cut(s)	201, 243, 516
NlaIII	CATG	4 cut(s)	31, 409, 965, 973
NlaIV	GGNNCC	1 cut(s)	884
NmeAIII	GCCGAG	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	564
NspI	RCATGY	3 cut(s)	31, 965, 973
PciI	ACATGT	1 cut(s)	969
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 248
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	128, 580, 854
PinAI	ACCGGT	1 cut(s)	68
PleI	GAGTC	3 cut(s)	219, 233, 475
PpsI	GAGTC	3 cut(s)	219, 233, 475
PscI	ACATGT	1 cut(s)	969
Psp6I	CCWGG	3 cut(s)	12, 654, 660
PspGI	CCWGG	3 cut(s)	12, 654, 660
PspN4I	GGNNCC	1 cut(s)	884
PspPI	GGNCC	4 cut(s)	10, 601, 636, 658
RsaI	GTAC	5 cut(s)	37, 50, 208, 811, 898
RsaNI	GTAC	5 cut(s)	36, 49, 207, 810, 897
RseI	CAYNNNNRTG	1 cut(s)	476
SalI	GTCGAC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	966
Sau3AI	GATC	3 cut(s)	201, 243, 516
Sau96I	GGNCC	4 cut(s)	10, 601, 636, 658
ScaI	AGTACT	1 cut(s)	37
SchI	GAGTC	3 cut(s)	220, 233, 476
ScrFI	CCNGG	6 cut(s)	8, 14, 232, 233, 656, 662
SduI	GDGCHC	4 cut(s)	186, 283, 547, 678
SfaNI	GCATC	2 cut(s)	123, 156
SinI	GGWCC	2 cut(s)	10, 636
SmaI	CCCGGG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	476
Sse9I	AATT	3 cut(s)	112, 538, 838
SspMI	CTAG	1 cut(s)	954
StyD4I	CCNGG	6 cut(s)	6, 12, 230, 231, 654, 660
TaaI	ACNGT	1 cut(s)	901
TaiI	ACGT	1 cut(s)	198
TasI	AATT	3 cut(s)	112, 538, 838
TatI	WGTACW	1 cut(s)	35
TauI	GCSGC	7 cut(s)	161, 164, 496, 707, 710, 750, 846
TfiI	GAWTC	3 cut(s)	128, 580, 854
Tru1I	TTAA	1 cut(s)	966
Tru9I	TTAA	1 cut(s)	966
TseFI	GTSAC	1 cut(s)	564
TseI	GCWGC	4 cut(s)	367, 370, 735, 744
Tsp45I	GTSAC	1 cut(s)	564
TspDTI	ATGAA	4 cut(s)	17, 137, 503, 551
TspGWI	ACGGA	1 cut(s)	101
TspMI	CCCGGG	1 cut(s)	231
VpaK11BI	GGWCC	2 cut(s)	10, 636
XagI	CCTNNNNNAGG	1 cut(s)	659
XceI	RCATGY	3 cut(s)	31, 965, 973
XmaI	CCCGGG	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	954
ZrmI	AGTACT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.