Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006011

Physical Location & Seq

Genomic Coordinates Reverse (-)

7780562 .. 7782454

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G139400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCTGTTGAAGCTCGGCATCTCAATCTCTTCCCTTCCCAGCTCATACCCAACAGGGAAATGATGAACCCAATACAAGGAAACACAAGTCTGTACAGTGCCCAGATTGGGTACGGGGTGCCATTATCAACTGGAGGGGTGGCTACAGAGGCTCTGCTGCCGACCTACAACTCTGTGATCACGGATTCGATAATGCCTCCGAAGACCTCAACAACCGCAGCCATGAAATCCGATAGCGGCCTCACCTACAACGTCCCGATTAGTCTACCAAGAAAGCGGTCCAGAGACTCCATTAACAACAACATCAGTCCTCCCTTCTCATACCCAACTGCTCCGGCTAATTACAAGAACTCATGCGGGCCTTTCTCTTTTCTCGGCGAGGACATTTCTCTGCGCATACAGCAAGAGCAATTCGACATCGACCGTCTCATTTCTCAACATATGGAAAAGGTGAGATTGGAGGTCGAGGAGAAGAGAAAGAGGCAAGCAAGGAAAATAATGGAGGCCATAGAGGTTGGGATGGCGAAGAGGCTCAGAGCCAAAGAGGAAGAGATTGAGAAAATCGGGAAACTGAATTGGGCTCTGGAAGAGAAGGTCAAGTCTCTGTGCCTAGAGAATCAAATATGGCGCGACCTGGCTCAGACCAACGAGGCCACCGCCAATGCTCTCCGCACCAACCTAGAACAGGTCCTGGCTCATCATCAGGTCAAGGAAGAACACCAAAATGACGCCGCCGCTCTCATGGACGACGCTCAGTCGTGCTGCGGAAGCTGCGGCGGAGACGAGGGTCAAAACGACGGCGTCGTGGGTTTAGACGGGTGGCGCACGGTGAAGGGTACTACTAGTACTACTGAGGGTCACCGCGGGGAGGAAGGTGCAAGCGGGCGATGCGGGTCGAGTACAAGTAGGTGGTGCAGGAATTGCGGGAAGGAAGAGGCCTGCGTTTTGCTTTTGCCGTGTAGGCACCTTTGCTTGTGTACGGTATGCGGATCATCGCTCCACACTTGCCCCATCTGTAAATCCACCAAGAACGCTAGTGTGCATGTGAACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006915 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0012501 GO:0016567 GO:0019222 GO:0019538 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0036211 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043154 GO:0043170 GO:0043281 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051865 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

353

Amino Acids

38.67

Weight (kDa)

6.75

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79110 AT1G79110 AT1G79110 AT3G12920
fragaria_vesca	FvH4_3g15670 FvH4_3g15670
malus_domestica	MD01G1028600.v1.1 MD01G1030500.v1.1 MD05G1220500.v1.1 MD10G1202900.v1.1
prunus_persica	Prupe.4G139400_v2.0.a1 Prupe.4G139400_v2.0.a1
pyrus_communis	pycom05g20390 pycom05g20400 pycom10g17350
rosa_chinensis	RchiOBHm_Chr5g0026341
rosa_laevigata	RLG00000032922
rosa_multiflora	Rmu_co8156202.1_g000001 Rmu_sc0005764.1_g000002 Rmu_sc0025146.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053010
rosa_rugosa	Rorug05G0092400.1
rosa_samantha	Rh5AG185600 Rh5BG182400 Rh5CG201800 Rh5DG184200
rosa_wichuraiana	Rw5G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	395
AccB1I	GGYRCC	2 cut(s)	118, 963
AccBSI	CCGCTC	1 cut(s)	737
AccI	GTMKAC	1 cut(s)	265
AccII	CGCG	2 cut(s)	630, 864
AclWI	GGATC	1 cut(s)	997
AcyI	GRCGYC	2 cut(s)	729, 801
AfaI	GTAC	6 cut(s)	95, 113, 838, 847, 901, 979
AfiI	CCNNNNNNNGG	4 cut(s)	77, 108, 685, 868
AgsI	TTSAA	1 cut(s)	11
AhdI	GACNNNNNGTC	1 cut(s)	754
AhlI	ACTAGT	1 cut(s)	842
AjnI	CCWGG	2 cut(s)	633, 690
AluBI	AGCT	3 cut(s)	14, 43, 771
AluI	AGCT	3 cut(s)	14, 43, 771
Alw26I	GTCTC	4 cut(s)	279, 431, 606, 774
AlwI	GGATC	1 cut(s)	997
AlwNI	CAGNNNCTG	1 cut(s)	691
AoxI	GGCC	5 cut(s)	238, 359, 504, 651, 936
ApeKI	GCWGC	4 cut(s)	157, 218, 762, 771
AspLEI	GCGC	3 cut(s)	396, 630, 825
AspS9I	GGNCC	3 cut(s)	279, 359, 688
AsuHPI	GGTGA	4 cut(s)	235, 463, 841, 851
AvaII	GGWCC	2 cut(s)	279, 688
BaeGI	GKGCMC	1 cut(s)	103
BanI	GGYRCC	2 cut(s)	118, 963
BanII	GRGCYC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	4 cut(s)	144, 230, 749, 758
BccI	CCATC	2 cut(s)	514, 1019
BceAI	ACGGC	2 cut(s)	814, 940
BciT130I	CCWGG	2 cut(s)	635, 692
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	4 cut(s)	279, 431, 606, 774
BcuI	ACTAGT	1 cut(s)	842
BfaI	CTAG	4 cut(s)	611, 680, 843, 1035
BfmI	CTRYAG	1 cut(s)	144
BglI	GCCNNNNNGGC	1 cut(s)	961
BisI	GCNGC	8 cut(s)	158, 219, 238, 732, 735, 763, 772, 775
BlsI	GCNGC	8 cut(s)	159, 220, 239, 733, 736, 764, 773, 776
BmcAI	AGTACT	1 cut(s)	847
Bme1390I	CCNGG	2 cut(s)	635, 692
Bme18I	GGWCC	2 cut(s)	279, 688
BmeRI	GACNNNNNGTC	1 cut(s)	754
BmgT120I	GGNCC	3 cut(s)	279, 359, 688
BmiI	GGNNCC	2 cut(s)	120, 965
BmrFI	CCNGG	2 cut(s)	635, 692
BmsI	GCATC	2 cut(s)	28, 878
BoxI	GACNNNNGTC	1 cut(s)	786
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	153
BsaHI	GRCGYC	2 cut(s)	729, 801
BsaJI	CCNNGG	1 cut(s)	862
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 108, 685, 868
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	635, 692
BseDI	CCNNGG	1 cut(s)	862
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	4 cut(s)	77, 108, 685, 868
BseMII	CTCAG	4 cut(s)	547, 653, 767, 843
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	4 cut(s)	144, 230, 749, 758
BseYI	CCCAGC	1 cut(s)	39
BsgI	GTGCAG	1 cut(s)	934
Bsh1236I	CGCG	2 cut(s)	630, 864
Bsh1285I	CGRYCG	1 cut(s)	424
BshFI	GGCC	5 cut(s)	240, 361, 506, 653, 938
BshNI	GGYRCC	2 cut(s)	118, 963
BsiEI	CGRYCG	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	4 cut(s)	77, 108, 685, 868
BsmAI	GTCTC	4 cut(s)	279, 431, 606, 774
BsmBI	CGTCTC	2 cut(s)	431, 774
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	5 cut(s)	240, 361, 506, 653, 938
Bsp1286I	GDGCHC	2 cut(s)	103, 583
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	177, 989
BspANI	GGCC	5 cut(s)	240, 361, 506, 653, 938
BspCNI	CTCAG	4 cut(s)	546, 652, 766, 844
BspFNI	CGCG	2 cut(s)	630, 864
BspLI	GGNNCC	2 cut(s)	120, 965
BspPI	GGATC	1 cut(s)	997
BspT107I	GGYRCC	2 cut(s)	118, 963
BsrBI	CCGCTC	1 cut(s)	737
BsrGI	TGTACA	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	862
BssMI	GATC	2 cut(s)	177, 989
BssNI	GRCGYC	2 cut(s)	729, 801
Bst2UI	CCWGG	2 cut(s)	635, 692
Bst4CI	ACNGT	4 cut(s)	98, 425, 829, 982
Bst6I	CTCTTC	6 cut(s)	35, 467, 521, 543, 582, 927
BstACI	GRCGYC	2 cut(s)	729, 801
BstAPI	GCANNNNNTGC	1 cut(s)	921
BstAUI	TGTACA	1 cut(s)	93
BstC8I	GCNNGC	5 cut(s)	359, 486, 880, 884, 940
BstDEI	CTNAG	5 cut(s)	533, 639, 753, 852, 1056
BstDSI	CCRYGG	1 cut(s)	862
BstEII	GGTNACC	1 cut(s)	857
BstENI	CCTNNNNNAGG	1 cut(s)	683
BstF5I	GGATG	1 cut(s)	525
BstFNI	CGCG	2 cut(s)	630, 864
BstHHI	GCGC	3 cut(s)	396, 630, 825
BstKTI	GATC	2 cut(s)	180, 992
BstMAI	GTCTC	4 cut(s)	279, 431, 606, 774
BstMBI	GATC	2 cut(s)	177, 989
BstMCI	CGRYCG	1 cut(s)	424
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 149, 400, 768, 771, 888, 921, 961
BstNI	CCWGG	2 cut(s)	635, 692
BstNSI	RCATGY	1 cut(s)	1046
BstPAI	GACNNNNGTC	1 cut(s)	786
BstPI	GGTNACC	1 cut(s)	857
BstSCI	CCNGG	2 cut(s)	633, 690
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	103
BstUI	CGCG	2 cut(s)	630, 864
BstV1I	GCAGC	4 cut(s)	144, 230, 749, 758
BstV2I	GAAGAC	1 cut(s)	209
BsuRI	GGCC	5 cut(s)	240, 361, 506, 653, 938
BtgI	CCRYGG	1 cut(s)	862
BtgZI	GCGATG	2 cut(s)	901, 978
BtsCI	GGATG	1 cut(s)	525
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	5 cut(s)	359, 486, 880, 884, 940
CaiI	CAGNNNCTG	1 cut(s)	691
CfoI	GCGC	3 cut(s)	396, 630, 825
Cfr13I	GGNCC	3 cut(s)	279, 359, 688
Cfr42I	CCGCGG	1 cut(s)	865
CseI	GACGC	3 cut(s)	737, 758, 790
Csp6I	GTAC	6 cut(s)	94, 112, 837, 846, 900, 978
CviAII	CATG	5 cut(s)	223, 354, 742, 1043, 1051
CviQI	GTAC	6 cut(s)	94, 112, 837, 846, 900, 978
DdeI	CTNAG	5 cut(s)	533, 639, 753, 852, 1056
DpnI	GATC	2 cut(s)	179, 991
DpnII	GATC	2 cut(s)	177, 989
DriI	GACNNNNNGTC	1 cut(s)	754
Eam1104I	CTCTTC	6 cut(s)	35, 467, 521, 543, 582, 927
Eam1105I	GACNNNNNGTC	1 cut(s)	754
EarI	CTCTTC	6 cut(s)	35, 467, 521, 543, 582, 927
EciI	GGCGGA	1 cut(s)	792
Eco147I	AGGCCT	1 cut(s)	938
Eco24I	GRGCYC	1 cut(s)	583
Eco47I	GGWCC	2 cut(s)	279, 688
Eco91I	GGTNACC	1 cut(s)	857
EcoNI	CCTNNNNNAGG	1 cut(s)	683
EcoO109I	RGGNCCY	1 cut(s)	688
EcoO65I	GGTNACC	1 cut(s)	857
EcoRII	CCWGG	2 cut(s)	633, 690
EcoT38I	GRGCYC	1 cut(s)	583
Esp3I	CGTCTC	2 cut(s)	431, 774
FaeI	CATG	5 cut(s)	226, 357, 745, 1046, 1054
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	5 cut(s)	222, 353, 741, 1042, 1050
FauI	CCCGC	5 cut(s)	350, 857, 875, 884, 917
FauNDI	CATATG	1 cut(s)	441
FbaI	TGATCA	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	8 cut(s)	158, 219, 238, 732, 735, 763, 772, 775
FokI	GGATG	1 cut(s)	532
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	8 cut(s)	158, 219, 238, 732, 735, 763, 772, 775
FspBI	CTAG	4 cut(s)	611, 680, 843, 1035
FspI	TGCGCA	1 cut(s)	395
GlaI	GCGC	3 cut(s)	395, 629, 824
GluI	GCNGC	8 cut(s)	158, 219, 238, 732, 735, 763, 772, 775
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	5 cut(s)	240, 361, 506, 653, 938
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	3 cut(s)	737, 758, 790
HhaI	GCGC	3 cut(s)	396, 630, 825
Hin1I	GRCGYC	2 cut(s)	729, 801
Hin1II	CATG	5 cut(s)	226, 357, 745, 1046, 1054
Hin6I	GCGC	3 cut(s)	394, 628, 823
HinP1I	GCGC	3 cut(s)	394, 628, 823
HinfI	GANTC	3 cut(s)	185, 287, 616
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	4 cut(s)	235, 463, 841, 851
Hpy166II	GTNNAC	3 cut(s)	266, 978, 1048
Hpy188I	TCNGA	4 cut(s)	201, 232, 536, 642
Hpy188III	TCNNGA	4 cut(s)	256, 282, 565, 584
Hpy8I	GTNNAC	3 cut(s)	266, 978, 1048
Hpy99I	CGWCG	3 cut(s)	752, 800, 806
HpyAV	CCTTC	6 cut(s)	45, 325, 586, 826, 866, 922
HpyCH4III	ACNGT	4 cut(s)	98, 425, 829, 982
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	3 cut(s)	878, 915, 1042
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 149, 400, 768, 771, 888, 921, 961
HpyF3I	CTNAG	5 cut(s)	533, 639, 753, 852, 1056
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	2 cut(s)	729, 801
Hsp92II	CATG	5 cut(s)	226, 357, 745, 1046, 1054
HspAI	GCGC	3 cut(s)	394, 628, 823
Ksp22I	TGATCA	1 cut(s)	177
KspI	CCGCGG	1 cut(s)	865
Kzo9I	GATC	2 cut(s)	177, 989
LmnI	GCTCC	2 cut(s)	337, 1002
Lsp1109I	GCAGC	4 cut(s)	144, 230, 749, 758
LweI	GCATC	2 cut(s)	28, 878
MaeI	CTAG	4 cut(s)	611, 680, 843, 1035
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	857
MalI	GATC	2 cut(s)	179, 991
MbiI	CCGCTC	1 cut(s)	737
MboI	GATC	2 cut(s)	177, 989
MboII	GAAGA	8 cut(s)	22, 214, 484, 538, 560, 599, 725, 944
MhlI	GDGCHC	2 cut(s)	103, 583
MluCI	AATT	4 cut(s)	340, 410, 574, 919
MlyI	GAGTC	1 cut(s)	281
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	723
MspA1I	CMGCKG	1 cut(s)	864
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	2 cut(s)	635, 692
MvaI	CCWGG	2 cut(s)	635, 692
MvnI	CGCG	2 cut(s)	630, 864
MwoI	GCNNNNNNNGC	8 cut(s)	11, 149, 400, 768, 771, 888, 921, 961
NdeI	CATATG	1 cut(s)	441
NdeII	GATC	2 cut(s)	177, 989
NlaIII	CATG	5 cut(s)	226, 357, 745, 1046, 1054
NlaIV	GGNNCC	2 cut(s)	120, 965
NmeAIII	GCCGAG	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	857
NsbI	TGCGCA	1 cut(s)	395
NspI	RCATGY	1 cut(s)	1046
PceI	AGGCCT	1 cut(s)	938
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PfeI	GAWTC	2 cut(s)	185, 616
PflFI	GACNNNGTC	1 cut(s)	800
PkrI	GCNGC	8 cut(s)	159, 220, 239, 733, 736, 764, 773, 776
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	688
PshAI	GACNNNNGTC	1 cut(s)	786
Psp5II	RGGWCCY	1 cut(s)	688
Psp6I	CCWGG	2 cut(s)	633, 690
PspEI	GGTNACC	1 cut(s)	857
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	2 cut(s)	633, 690
PspN4I	GGNNCC	2 cut(s)	120, 965
PspPI	GGNCC	3 cut(s)	279, 359, 688
PspPPI	RGGWCCY	1 cut(s)	688
PstNI	CAGNNNCTG	1 cut(s)	691
PsyI	GACNNNGTC	1 cut(s)	800
RsaI	GTAC	6 cut(s)	95, 113, 838, 847, 901, 979
RsaNI	GTAC	6 cut(s)	94, 112, 837, 846, 900, 978
RseI	CAYNNNNRTG	1 cut(s)	723
SacII	CCGCGG	1 cut(s)	865
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	8 cut(s)	158, 219, 238, 732, 735, 763, 772, 775
Sau3AI	GATC	2 cut(s)	177, 989
Sau96I	GGNCC	3 cut(s)	279, 359, 688
ScaI	AGTACT	1 cut(s)	847
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	635, 692
SduI	GDGCHC	2 cut(s)	103, 583
SfaNI	GCATC	2 cut(s)	28, 878
SfcI	CTRYAG	1 cut(s)	144
Sfr303I	CCGCGG	1 cut(s)	865
SgrBI	CCGCGG	1 cut(s)	865
SinI	GGWCC	2 cut(s)	279, 688
SmiMI	CAYNNNNRTG	1 cut(s)	723
SpeI	ACTAGT	1 cut(s)	842
Sse9I	AATT	4 cut(s)	340, 410, 574, 919
SseBI	AGGCCT	1 cut(s)	938
SspMI	CTAG	4 cut(s)	611, 680, 843, 1035
StuI	AGGCCT	1 cut(s)	938
StyD4I	CCNGG	2 cut(s)	633, 690
TaaI	ACNGT	4 cut(s)	98, 425, 829, 982
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	5 cut(s)	188, 414, 420, 465, 896
TasI	AATT	4 cut(s)	340, 410, 574, 919
TatI	WGTACW	3 cut(s)	93, 845, 899
TauI	GCSGC	4 cut(s)	240, 734, 737, 777
TfiI	GAWTC	2 cut(s)	185, 616
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	857
TseI	GCWGC	4 cut(s)	157, 218, 762, 771
Tsp45I	GTSAC	1 cut(s)	857
TspDTI	ATGAA	2 cut(s)	80, 239
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	800
VpaK11BI	GGWCC	2 cut(s)	279, 688
XagI	CCTNNNNNAGG	1 cut(s)	683
XceI	RCATGY	1 cut(s)	1046
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	4 cut(s)	611, 680, 843, 1035
ZrmI	AGTACT	1 cut(s)	847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.