Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006011

Physical Location & Seq

Genomic Coordinates Reverse (-)

4121789 .. 4123582

Gene Structure 1794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCCGTTGAAGCTCACCATCTAAATCCTCTGTTCTCTTCCAACAGAGAAATGATTCATCCCGTTGAAGCAAGCGGTGTAGTCTATAACACCCAGATGAGATACGGCACCGTTCCGACGTTTAACCCCACCGTGGAATGTCAAACTTCTCTGTTTAACCCAATCTACAACATCTCACCAGTCGATCGTTTGGTTCATCAATCCATGAAACCAACGATACAGTCCGTTGATAGTTCTCTCACATTCAACAGCGACAACAACGTCGATTTTCTTCGTCCTGTGTCGTCGAGAAAACGTTCTAGAGAAGAATCCGTTGTTCTAAACCCTTCCGCTTATATGCAAATTCAGAAAAATCCCACCGATCCTCTTATGTTCCTTGGCCAAGACTTGTCTTCTAACGTTCAACAACATCATTTCGATATCGATCGTTTGATCTCTAATCACGTTGAGAGAATGAGAATGGAGATTGAAGAGAAGAGAAAAACACAAGGGAGAAGGATAGTGGAAGCCGTCGAACAAGGTTTGATGAAGACACTAAGAGCCAAAGACGATGAGATAAATCACATCGGGAAACTAAACCTCTTTCTCGAAGAGAAGGTTAAGTCTTTGTGCGTAGAGAATCAGATATGGCGTGACGTGGCACAGTCTAATGAAGCCACCGTAAACGCCCTACGTTCTAACTTGCAACAAGTTCTCGCAGCCGTGGAGCGTAACCGGTGGGAGGAGCCGCCCACGGTGGCTGACGACGCACAGTCTTGTTGCGGTAGCAACGACGAAGGTGATAGCGAGGAAGAACGGTGGAAGTTAGCGGGAGAGGCGCAGGATACGAAAAAGATGTGTAGGGTAGGGATGAGTATGTGTAGAAGCTGTGGGAAAGGAGAAGCAAGTGTGTTACTGTTACCGTGCAGACACATGTGTCTATGTTCTGTGTGTGGCTCTTCACTCAACACTTGTCCTATATGTAAATCTCCAAAGACCGCTAGTCTACATGTTAATCTTTCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009739 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0030162 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

335

Amino Acids

37.71

Weight (kDa)

6.22

Isoelectric Point (pI)

57.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	286 - 326	1e-10	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79110 AT1G79110 AT1G79110 AT3G12920
fragaria_vesca	FvH4_3g15670 FvH4_3g15670
malus_domestica	MD01G1028600.v1.1 MD01G1030500.v1.1 MD05G1220500.v1.1 MD10G1202900.v1.1
prunus_persica	Prupe.4G139400_v2.0.a1 Prupe.4G139400_v2.0.a1
pyrus_communis	pycom05g20390 pycom05g20400 pycom10g17350
rosa_chinensis	RchiOBHm_Chr5g0026341
rosa_laevigata	RLG00000032922
rosa_multiflora	Rmu_co8156202.1_g000001 Rmu_sc0005764.1_g000002 Rmu_sc0025146.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053010
rosa_rugosa	Rorug05G0092400.1
rosa_samantha	Rh5AG185600 Rh5BG182400 Rh5CG201800 Rh5DG184200
rosa_wichuraiana	Rw5G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	260, 915
AccB1I	GGYRCC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	985
AciI	CCGC	6 cut(s)	75, 330, 728, 762, 809, 978
AclI	AACGTT	2 cut(s)	295, 399
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	2 cut(s)	3, 379
AcsI	RAATTY	1 cut(s)	342
AfiI	CCNNNNNNNGG	2 cut(s)	133, 721
AflIII	ACRYGT	2 cut(s)	912, 988
AgeI	ACCGGT	1 cut(s)	714
AgsI	TTSAA	5 cut(s)	11, 68, 247, 404, 470
AhdI	GACNNNNNGTC	2 cut(s)	751, 981
AjiI	CACGTC	1 cut(s)	637
AluBI	AGCT	2 cut(s)	14, 867
AluI	AGCT	2 cut(s)	14, 867
AlwI	GGATC	1 cut(s)	356
AoxI	GGCC	2 cut(s)	3, 379
ApeKI	GCWGC	1 cut(s)	698
ApoI	RAATTY	1 cut(s)	342
AsiGI	ACCGGT	1 cut(s)	714
Asp700I	GAANNNNTTC	2 cut(s)	54, 295
AspLEI	GCGC	1 cut(s)	820
AsuHPI	GGTGA	3 cut(s)	8, 168, 791
BalI	TGGCCA	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	107
BbsI	GAAGAC	2 cut(s)	384, 536
BbvI	GCAGC	1 cut(s)	710
BccI	CCATC	1 cut(s)	27
BceAI	ACGGC	3 cut(s)	121, 494, 686
BciVI	GTATCC	1 cut(s)	817
BfaI	CTAG	2 cut(s)	300, 981
BfuI	GTATCC	1 cut(s)	817
BisI	GCNGC	2 cut(s)	699, 728
BlsI	GCNGC	2 cut(s)	700, 729
BmeRI	GACNNNNNGTC	2 cut(s)	751, 981
BmgBI	CACGTC	1 cut(s)	637
BmiI	GGNNCC	2 cut(s)	109, 726
BpiI	GAAGAC	2 cut(s)	384, 536
Bsa29I	ATCGAT	1 cut(s)	423
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	4 cut(s)	132, 376, 702, 732
BsaWI	WCCGGW	1 cut(s)	714
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 721
Bse118I	RCCGGY	1 cut(s)	714
Bse1I	ACTGG	1 cut(s)	179
Bse8I	GATNNNNATC	1 cut(s)	423
BseCI	ATCGAT	1 cut(s)	423
BseDI	CCNNGG	4 cut(s)	132, 376, 702, 732
BseGI	GGATG	2 cut(s)	58, 855
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	133, 721
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	737
BseXI	GCAGC	1 cut(s)	710
BsgI	GTGCAG	1 cut(s)	925
Bsh1285I	CGRYCG	2 cut(s)	187, 427
BshFI	GGCC	2 cut(s)	5, 381
BshNI	GGYRCC	1 cut(s)	107
BshTI	ACCGGT	1 cut(s)	714
BshVI	ATCGAT	1 cut(s)	423
BsiEI	CGRYCG	2 cut(s)	187, 427
BsiSI	CCGG	1 cut(s)	715
BslI	CCNNNNNNNGG	2 cut(s)	133, 721
BsnI	GGCC	2 cut(s)	5, 381
Bsp143I	GATC	4 cut(s)	184, 361, 424, 432
BspACI	CCGC	6 cut(s)	75, 330, 728, 762, 809, 978
BspANI	GGCC	2 cut(s)	5, 381
BspDI	ATCGAT	1 cut(s)	423
BspLI	GGNNCC	2 cut(s)	109, 726
BspPI	GGATC	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	943
BspT107I	GGYRCC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	714
BsrI	ACTGG	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	714
BssECI	CCNNGG	4 cut(s)	132, 376, 702, 732
BssMI	GATC	4 cut(s)	184, 361, 424, 432
BssT1I	CCWWGG	1 cut(s)	376
Bst6I	CTCTTC	5 cut(s)	43, 465, 470, 585, 943
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	536, 1005
BstDSI	CCRYGG	3 cut(s)	132, 702, 732
BstF5I	GGATG	2 cut(s)	58, 855
BstHHI	GCGC	1 cut(s)	820
BstKTI	GATC	4 cut(s)	187, 364, 427, 435
BstMBI	GATC	4 cut(s)	184, 361, 424, 432
BstMCI	CGRYCG	2 cut(s)	187, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 746, 815
BstNSI	RCATGY	2 cut(s)	916, 992
BstV1I	GCAGC	1 cut(s)	710
BstV2I	GAAGAC	2 cut(s)	384, 536
Bsu15I	ATCGAT	1 cut(s)	423
BsuI	GTATCC	1 cut(s)	817
BsuRI	GGCC	2 cut(s)	5, 381
BsuTUI	ATCGAT	1 cut(s)	423
BtgI	CCRYGG	3 cut(s)	132, 702, 732
BtrI	CACGTC	1 cut(s)	637
BtsCI	GGATG	2 cut(s)	58, 855
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	1 cut(s)	820
Cfr10I	RCCGGY	1 cut(s)	714
ClaI	ATCGAT	1 cut(s)	423
CseI	GACGC	1 cut(s)	755
CspAI	ACCGGT	1 cut(s)	714
CviAII	CATG	3 cut(s)	205, 913, 989
DdeI	CTNAG	2 cut(s)	536, 1005
DpnI	GATC	4 cut(s)	186, 363, 426, 434
DpnII	GATC	4 cut(s)	184, 361, 424, 432
DrdI	GACNNNNNNGTC	2 cut(s)	260, 915
DriI	GACNNNNNGTC	2 cut(s)	751, 981
DseDI	GACNNNNNNGTC	2 cut(s)	260, 915
EaeI	YGGCCR	2 cut(s)	3, 379
Eam1104I	CTCTTC	5 cut(s)	43, 465, 470, 585, 943
Eam1105I	GACNNNNNGTC	2 cut(s)	751, 981
EarI	CTCTTC	5 cut(s)	43, 465, 470, 585, 943
Eco130I	CCWWGG	1 cut(s)	376
Eco32I	GATATC	1 cut(s)	421
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	3 cut(s)	208, 916, 992
FatI	CATG	3 cut(s)	204, 912, 988
FauI	CCCGC	1 cut(s)	802
FblI	GTMKAC	1 cut(s)	985
Fnu4HI	GCNGC	2 cut(s)	699, 728
FokI	GGATG	2 cut(s)	45, 862
Fsp4HI	GCNGC	2 cut(s)	699, 728
FspBI	CTAG	2 cut(s)	300, 981
GlaI	GCGC	1 cut(s)	819
GluI	GCNGC	2 cut(s)	699, 728
HaeIII	GGCC	2 cut(s)	5, 381
HapII	CCGG	1 cut(s)	715
HgaI	GACGC	1 cut(s)	755
HhaI	GCGC	1 cut(s)	820
Hin1II	CATG	3 cut(s)	208, 916, 992
Hin6I	GCGC	1 cut(s)	818
HinP1I	GCGC	1 cut(s)	818
HinfI	GANTC	3 cut(s)	55, 308, 619
HpaII	CCGG	1 cut(s)	715
HphI	GGTGA	3 cut(s)	8, 168, 791
Hpy166II	GTNNAC	2 cut(s)	664, 986
Hpy188I	TCNGA	3 cut(s)	117, 348, 624
Hpy188III	TCNNGA	4 cut(s)	288, 300, 568, 587
Hpy8I	GTNNAC	2 cut(s)	664, 986
Hpy99I	CGWCG	6 cut(s)	121, 266, 289, 515, 749, 776
HpyAV	CCTTC	4 cut(s)	336, 489, 589, 770
HpyCH4IV	ACGT	7 cut(s)	119, 261, 295, 399, 444, 636, 673
HpyCH4V	TGCA	3 cut(s)	340, 685, 906
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 746, 815
HpyF3I	CTNAG	2 cut(s)	536, 1005
HpySE526I	ACGT	7 cut(s)	119, 261, 295, 399, 444, 636, 673
Hsp92II	CATG	3 cut(s)	208, 916, 992
HspAI	GCGC	1 cut(s)	818
Kzo9I	GATC	4 cut(s)	184, 361, 424, 432
LguI	GCTCTTC	1 cut(s)	943
LmnI	GCTCC	2 cut(s)	706, 724
LpnPI	CCDG	5 cut(s)	107, 192, 291, 728, 806
Lsp1109I	GCAGC	1 cut(s)	710
MaeI	CTAG	2 cut(s)	300, 981
MaeII	ACGT	7 cut(s)	119, 261, 295, 399, 444, 636, 673
MaeIII	GTNAC	4 cut(s)	632, 710, 891, 897
MalI	GATC	4 cut(s)	186, 363, 426, 434
MboI	GATC	4 cut(s)	184, 361, 424, 432
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	1 cut(s)	342
MluNI	TGGCCA	1 cut(s)	381
MmeI	TCCRAC	2 cut(s)	66, 140
MnlI	CCTC	6 cut(s)	39, 375, 590, 715, 781, 808
Mox20I	TGGCCA	1 cut(s)	381
MroXI	GAANNNNTTC	2 cut(s)	54, 295
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	4 cut(s)	123, 156, 600, 993
MslI	CAYNNNNRTG	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	381
MspI	CCGG	1 cut(s)	715
MwoI	GCNNNNNNNGC	3 cut(s)	11, 746, 815
NdeII	GATC	4 cut(s)	184, 361, 424, 432
NlaIII	CATG	3 cut(s)	208, 916, 992
NlaIV	GGNNCC	2 cut(s)	109, 726
NmuCI	GTSAC	1 cut(s)	632
NspI	RCATGY	2 cut(s)	916, 992
PciI	ACATGT	2 cut(s)	912, 988
PciSI	GCTCTTC	1 cut(s)	943
PdmI	GAANNNNTTC	2 cut(s)	54, 295
PfeI	GAWTC	3 cut(s)	55, 308, 619
PinAI	ACCGGT	1 cut(s)	714
PkrI	GCNGC	2 cut(s)	700, 729
Ple19I	CGATCG	2 cut(s)	187, 427
PscI	ACATGT	2 cut(s)	912, 988
Psp1406I	AACGTT	2 cut(s)	295, 399
PspN4I	GGNNCC	2 cut(s)	109, 726
PvuI	CGATCG	2 cut(s)	187, 427
RseI	CAYNNNNRTG	1 cut(s)	95
SapI	GCTCTTC	1 cut(s)	943
SaqAI	TTAA	4 cut(s)	123, 156, 600, 993
SatI	GCNGC	2 cut(s)	699, 728
Sau3AI	GATC	4 cut(s)	184, 361, 424, 432
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	6 cut(s)	75, 330, 728, 762, 809, 978
SspMI	CTAG	2 cut(s)	300, 981
StyI	CCWWGG	1 cut(s)	376
TaiI	ACGT	7 cut(s)	122, 264, 298, 402, 447, 639, 676
TaqI	TCGA	7 cut(s)	183, 264, 287, 417, 423, 513, 588
TasI	AATT	1 cut(s)	342
TauI	GCSGC	1 cut(s)	730
TfiI	GAWTC	3 cut(s)	55, 308, 619
Tru1I	TTAA	4 cut(s)	123, 156, 600, 993
Tru9I	TTAA	4 cut(s)	123, 156, 600, 993
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	1 cut(s)	698
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	5 cut(s)	47, 185, 221, 542, 666
TspGWI	ACGGA	2 cut(s)	214, 301
XapI	RAATTY	1 cut(s)	342
XbaI	TCTAGA	1 cut(s)	299
XceI	RCATGY	2 cut(s)	916, 992
XmiI	GTMKAC	1 cut(s)	985
XmnI	GAANNNNTTC	2 cut(s)	54, 295
XspI	CTAG	2 cut(s)	300, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.