Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8156202.1

Orthogroup ID

OG0006011

Physical Location & Seq

Genomic Coordinates Reverse (-)

82 .. 582

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8156202.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggggatgatgaagcggctgagagccaaagaggtcgagatcgagaaaatcgggaagatgaattgggctctggaagagaaggtgaagtcactctgcatagagaatcaaatatggcgcgacttggcccagaccaacgaggccaccgccaatgctctccggaccaacctcgaacaagtcctggcccaggtgaaagtcgagcccaacaacaaccaaaacgacgccgtggcggcggcgctgatggacgacgcgcagtcgtgctgcgggagcagcggcggaaacgacgaggtagggtggcgggcggtgaagggggaggaagggacaagcgggtcgggtacagcaagtgggagtaggtggtgcaggaattgcggcaaggaggaatcgtgtgtgttgctgttgccgtgtaggcacctgtgcttgtgtacggtctgtgggtcatccctccacacttgcccagtctgtaaatccaccaagaacgctagtgtgcatgttaacatgtcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006915 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0012501 GO:0016567 GO:0019222 GO:0019538 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0036211 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043154 GO:0043170 GO:0043281 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051865 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

166

Amino Acids

17.95

Weight (kDa)

6.8

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79110 AT1G79110 AT1G79110 AT3G12920
fragaria_vesca	FvH4_3g15670 FvH4_3g15670
malus_domestica	MD01G1028600.v1.1 MD01G1030500.v1.1 MD05G1220500.v1.1 MD10G1202900.v1.1
prunus_persica	Prupe.4G139400_v2.0.a1 Prupe.4G139400_v2.0.a1
pyrus_communis	pycom05g20390 pycom05g20400 pycom10g17350
rosa_chinensis	RchiOBHm_Chr5g0026341
rosa_laevigata	RLG00000032922
rosa_multiflora	Rmu_co8156202.1_g000001 Rmu_sc0005764.1_g000002 Rmu_sc0025146.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053010
rosa_rugosa	Rorug05G0092400.1
rosa_samantha	Rh5AG185600 Rh5BG182400 Rh5CG201800 Rh5DG184200
rosa_wichuraiana	Rw5G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	325
AccB1I	GGYRCC	1 cut(s)	405
AccII	CGCG	2 cut(s)	117, 248
AccIII	TCCGGA	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	2 cut(s)	334, 421
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflIII	ACRYGT	1 cut(s)	492
AhdI	GACNNNNNGTC	1 cut(s)	250
AjnI	CCWGG	2 cut(s)	177, 183
Aor13HI	TCCGGA	1 cut(s)	156
AoxI	GGCC	3 cut(s)	123, 138, 180
ApeKI	GCWGC	2 cut(s)	258, 267
AspLEI	GCGC	3 cut(s)	117, 235, 250
AspS9I	GGNCC	3 cut(s)	124, 159, 181
AsuHPI	GGTGA	3 cut(s)	94, 199, 313
AvaII	GGWCC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	405
BanII	GRGCYC	2 cut(s)	70, 201
BbvI	GCAGC	2 cut(s)	245, 279
BccI	CCATC	1 cut(s)	232
BceAI	ACGGC	2 cut(s)	206, 382
BciT130I	CCWGG	2 cut(s)	179, 185
BfaI	CTAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	236
BglI	GCCNNNNNGGC	2 cut(s)	227, 403
BisI	GCNGC	7 cut(s)	17, 228, 231, 259, 268, 271, 367
BlsI	GCNGC	7 cut(s)	18, 229, 232, 260, 269, 272, 368
Bme1390I	CCNGG	2 cut(s)	179, 185
Bme18I	GGWCC	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmgT120I	GGNCC	3 cut(s)	124, 159, 181
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	2 cut(s)	179, 185
BmrI	ACTGGG	1 cut(s)	446
BmuI	ACTGGG	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	183, 222
BsaWI	WCCGGW	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	452
BseAI	TCCGGA	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	179, 185
BseDI	CCNNGG	2 cut(s)	183, 222
BseGI	GGATG	2 cut(s)	12, 434
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	452
BseXI	GCAGC	2 cut(s)	245, 279
BsgI	GTGCAG	1 cut(s)	376
Bsh1236I	CGCG	2 cut(s)	117, 248
BshFI	GGCC	3 cut(s)	125, 140, 182
BshNI	GGYRCC	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	3 cut(s)	125, 140, 182
Bsp1286I	GDGCHC	2 cut(s)	70, 201
Bsp13I	TCCGGA	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	39
BspANI	GGCC	3 cut(s)	125, 140, 182
BspCNI	CTCAG	1 cut(s)	12
BspEI	TCCGGA	1 cut(s)	156
BspFNI	CGCG	2 cut(s)	117, 248
BspLI	GGNNCC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	183, 222
BssMI	GATC	1 cut(s)	39
BssNI	GRCGYC	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	179, 185
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	20, 498
BstDSI	CCRYGG	1 cut(s)	222
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	12, 434
BstFNI	CGCG	2 cut(s)	117, 248
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	3 cut(s)	117, 235, 250
BstKTI	GATC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 264, 267, 363, 403
BstNI	CCWGG	2 cut(s)	179, 185
BstNSI	RCATGY	2 cut(s)	488, 496
BstSCI	CCNGG	2 cut(s)	177, 183
BstUI	CGCG	2 cut(s)	117, 248
BstV1I	GCAGC	2 cut(s)	245, 279
BsuRI	GGCC	3 cut(s)	125, 140, 182
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	12, 434
Cac8I	GCNNGC	1 cut(s)	297
CfoI	GCGC	3 cut(s)	117, 235, 250
Cfr13I	GGNCC	3 cut(s)	124, 159, 181
CseI	GACGC	2 cut(s)	227, 254
Csp6I	GTAC	2 cut(s)	333, 420
CviAII	CATG	2 cut(s)	485, 493
CviJI	RGCY	7 cut(s)	19, 26, 68, 125, 140, 182, 199
CviKI_1	RGCY	7 cut(s)	19, 26, 68, 125, 140, 182, 199
CviQI	GTAC	2 cut(s)	333, 420
DdeI	CTNAG	2 cut(s)	20, 498
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
DrdI	GACNNNNNNGTC	1 cut(s)	325
DriI	GACNNNNNGTC	1 cut(s)	250
DseDI	GACNNNNNNGTC	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	69
Eam1105I	GACNNNNNGTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	288
Eco24I	GRGCYC	2 cut(s)	70, 201
Eco47I	GGWCC	1 cut(s)	159
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	177, 183
EcoT38I	GRGCYC	2 cut(s)	70, 201
FaeI	CATG	2 cut(s)	488, 496
FaiI	YATR	4 cut(s)	98, 112, 486, 494
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	2 cut(s)	484, 492
FauI	CCCGC	3 cut(s)	254, 288, 317
Fnu4HI	GCNGC	7 cut(s)	17, 228, 231, 259, 268, 271, 367
FokI	GGATG	2 cut(s)	19, 421
FriOI	GRGCYC	2 cut(s)	70, 201
Fsp4HI	GCNGC	7 cut(s)	17, 228, 231, 259, 268, 271, 367
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	3 cut(s)	116, 234, 249
GluI	GCNGC	7 cut(s)	17, 228, 231, 259, 268, 271, 367
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	3 cut(s)	125, 140, 182
HapII	CCGG	1 cut(s)	157
HgaI	GACGC	2 cut(s)	227, 254
HhaI	GCGC	3 cut(s)	117, 235, 250
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	488, 496
Hin6I	GCGC	3 cut(s)	115, 233, 248
HinP1I	GCGC	3 cut(s)	115, 233, 248
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	2 cut(s)	103, 377
HpaI	GTTAAC	1 cut(s)	490
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	3 cut(s)	94, 199, 313
Hpy166II	GTNNAC	2 cut(s)	420, 490
Hpy188III	TCNNGA	5 cut(s)	37, 43, 52, 71, 157
Hpy8I	GTNNAC	2 cut(s)	420, 490
Hpy99I	CGWCG	3 cut(s)	221, 248, 284
HpyAV	CCTTC	3 cut(s)	73, 298, 308
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4V	TGCA	3 cut(s)	96, 357, 484
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 264, 267, 363, 403
HpyF3I	CTNAG	2 cut(s)	20, 498
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	488, 496
HspAI	GCGC	3 cut(s)	115, 233, 248
Kpn2I	TCCGGA	1 cut(s)	156
KspAI	GTTAAC	1 cut(s)	490
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	264
Lsp1109I	GCAGC	2 cut(s)	245, 279
MaeI	CTAG	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	87
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	2 cut(s)	67, 86
MhlI	GDGCHC	2 cut(s)	70, 201
MluCI	AATT	2 cut(s)	61, 361
MnlI	CCTC	7 cut(s)	25, 130, 176, 277, 304, 367, 449
MroI	TCCGGA	1 cut(s)	156
MseI	TTAA	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	270
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	2 cut(s)	179, 185
MvaI	CCWGG	2 cut(s)	179, 185
MvnI	CGCG	2 cut(s)	117, 248
MwoI	GCNNNNNNNGC	5 cut(s)	227, 264, 267, 363, 403
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	2 cut(s)	488, 496
NlaIV	GGNNCC	1 cut(s)	407
NmuCI	GTSAC	1 cut(s)	87
NspI	RCATGY	2 cut(s)	488, 496
PciI	ACATGT	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	103, 377
PkrI	GCNGC	7 cut(s)	18, 229, 232, 260, 269, 272, 368
PscI	ACATGT	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	177, 183
PspGI	CCWGG	2 cut(s)	177, 183
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	3 cut(s)	124, 159, 181
RsaI	GTAC	2 cut(s)	334, 421
RsaNI	GTAC	2 cut(s)	333, 420
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	7 cut(s)	17, 228, 231, 259, 268, 271, 367
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	3 cut(s)	124, 159, 181
ScrFI	CCNGG	2 cut(s)	179, 185
SduI	GDGCHC	2 cut(s)	70, 201
SetI	ASST	7 cut(s)	36, 84, 168, 189, 288, 353, 411
SinI	GGWCC	1 cut(s)	159
Sse9I	AATT	2 cut(s)	61, 361
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	2 cut(s)	177, 183
TaaI	ACNGT	1 cut(s)	424
TaqI	TCGA	4 cut(s)	36, 42, 168, 195
TasI	AATT	2 cut(s)	61, 361
TauI	GCSGC	5 cut(s)	19, 230, 233, 273, 369
TfiI	GAWTC	2 cut(s)	103, 377
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TseFI	GTSAC	1 cut(s)	87
TseI	GCWGC	2 cut(s)	258, 267
Tsp45I	GTSAC	1 cut(s)	87
TspDTI	ATGAA	2 cut(s)	26, 74
VpaK11BI	GGWCC	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	182
XceI	RCATGY	2 cut(s)	488, 496
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.