Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006011

Physical Location & Seq

Genomic Coordinates Forward (+)

23162143 .. 23163470

Gene Structure 1328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTGCGGAGGACGAAAAACAGAAAGACGCGGCGCTGGCGTTCCGTATATGCCCCTCAGTTATCAACCACTACCAAACTCCATAACGCTTCGCTCGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACATATCTCGACACACCAATTTGCAAACCGAAAGAAAACGTTTCATCTTTTTCCTCTGCTTTCTTCTGCCTCCTTTTTCACCATTAAAATCATGGCTGTTGAAGCCCGGCATCTCAATCTCTTCCCTTCCCAACTCATACCCAACAGGGACATGATGAATCCGATTCAGGGGAACGGAAATCTGTACAATACCCAGATTGGGAACGGAGTGCCGTTTTCCACCGGAGGAGTGGCGGCGGAGGCTCTGCTGCCGACGTACAACTCCGTGATCGCCGATTCCATAATGCCCCCGAAGACCTGCGCCATGAAATCCGACAGTGGCCTCACCTACAACGTCCCGATTCCTCTCCCAAGAAAGCGGTCCAGAGACTCTGTTACCAACGGCATCAGCCCTTCGTTTTCGTACCCGGCTCCGCCGTTAACCAACTACAAAAACTGCGACCCCTTCTCTTTTCTCGGCGAGGACATTTCTCTGCACGTGCAGCAGCAGCAGTTCGACGTCGACCGTCTCATTTCCCAACACGGAGAAGGTGAGATTGGAAGTCGAGGAGAAGAGGAAGCGGCAGGCGCGGCGGATAATGGAGGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006915 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0012501 GO:0016567 GO:0019222 GO:0019538 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0036211 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043154 GO:0043170 GO:0043281 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051865 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

240

Amino Acids

25.98

Weight (kDa)

8.44

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79110 AT1G79110 AT1G79110 AT3G12920
fragaria_vesca	FvH4_3g15670 FvH4_3g15670
malus_domestica	MD01G1028600.v1.1 MD01G1030500.v1.1 MD05G1220500.v1.1 MD10G1202900.v1.1
prunus_persica	Prupe.4G139400_v2.0.a1 Prupe.4G139400_v2.0.a1
pyrus_communis	pycom05g20390 pycom05g20400 pycom10g17350
rosa_chinensis	RchiOBHm_Chr5g0026341
rosa_laevigata	RLG00000032922
rosa_multiflora	Rmu_co8156202.1_g000001 Rmu_sc0005764.1_g000002 Rmu_sc0025146.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053010
rosa_rugosa	Rorug05G0092400.1
rosa_samantha	Rh5AG185600 Rh5BG182400 Rh5CG201800 Rh5DG184200
rosa_wichuraiana	Rw5G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	630
Acc36I	ACCTGC	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	630
AccII	CGCG	3 cut(s)	30, 97, 698
AciI	CCGC	9 cut(s)	6, 30, 362, 365, 487, 542, 689, 698, 701
AclI	AACGTT	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	607
AcyI	GRCGYC	1 cut(s)	627
AfaI	GTAC	3 cut(s)	314, 386, 533
AfiI	CCNNNNNNNGG	2 cut(s)	296, 327
AgsI	TTSAA	1 cut(s)	230
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
Alw26I	GTCTC	2 cut(s)	489, 641
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	4 cut(s)	376, 610, 613, 616
AspLEI	GCGC	4 cut(s)	35, 99, 431, 698
AspS9I	GGNCC	1 cut(s)	489
AsuC2I	CCSGG	2 cut(s)	235, 536
AsuHPI	GGTGA	3 cut(s)	199, 445, 671
AvaII	GGWCC	1 cut(s)	489
BbrPI	CACGTG	1 cut(s)	607
BbsI	GAAGAC	1 cut(s)	428
BbvI	GCAGC	4 cut(s)	363, 622, 625, 628
BceAI	ACGGC	3 cut(s)	325, 526, 529
BcnI	CCSGG	2 cut(s)	235, 536
BcoDI	GTCTC	2 cut(s)	489, 641
BfoI	RGCGCY	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	434
BisI	GCNGC	8 cut(s)	31, 363, 377, 611, 614, 617, 690, 699
BlsI	GCNGC	8 cut(s)	32, 364, 378, 612, 615, 618, 691, 700
Bme1390I	CCNGG	2 cut(s)	235, 536
Bme18I	GGWCC	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	2 cut(s)	235, 536
BmsI	GCATC	2 cut(s)	247, 522
BpiI	GAAGAC	1 cut(s)	428
BpuMI	CCSGG	2 cut(s)	235, 536
BsaAI	YACGTR	1 cut(s)	607
BsaHI	GRCGYC	1 cut(s)	627
BsaWI	WCCGGW	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 327
BseLI	CCNNNNNNNGG	2 cut(s)	296, 327
BseMII	CTCAG	1 cut(s)	70
BseRI	GAGGAG	2 cut(s)	369, 690
BseXI	GCAGC	4 cut(s)	363, 622, 625, 628
BsgI	GTGCAG	2 cut(s)	587, 629
Bsh1236I	CGCG	3 cut(s)	30, 97, 698
Bsh1285I	CGRYCG	1 cut(s)	634
BshFI	GGCC	1 cut(s)	450
BsiEI	CGRYCG	1 cut(s)	634
BsiSI	CCGG	3 cut(s)	235, 351, 536
BslFI	GGGAC	2 cut(s)	290, 449
BslI	CCNNNNNNNGG	2 cut(s)	296, 327
BsmAI	GTCTC	2 cut(s)	489, 641
BsmBI	CGTCTC	1 cut(s)	641
BsmFI	GGGAC	2 cut(s)	290, 449
BsnI	GGCC	1 cut(s)	450
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	396
BspACI	CCGC	9 cut(s)	6, 30, 362, 365, 487, 542, 689, 698, 701
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	1 cut(s)	69
BspFNI	CGCG	3 cut(s)	30, 97, 698
BspLI	GGNNCC	1 cut(s)	540
BspMI	ACCTGC	1 cut(s)	434
BsrGI	TGTACA	1 cut(s)	312
BssMI	GATC	1 cut(s)	396
BssNI	GRCGYC	1 cut(s)	627
Bst4CI	ACNGT	2 cut(s)	446, 635
Bst6I	CTCTTC	2 cut(s)	254, 675
BstACI	GRCGYC	1 cut(s)	627
BstAUI	TGTACA	1 cut(s)	312
BstBAI	YACGTR	1 cut(s)	607
BstC8I	GCNNGC	3 cut(s)	37, 95, 694
BstDEI	CTNAG	1 cut(s)	56
BstFNI	CGCG	3 cut(s)	30, 97, 698
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	4 cut(s)	35, 99, 431, 698
BstKTI	GATC	1 cut(s)	399
BstMAI	GTCTC	2 cut(s)	489, 641
BstMBI	GATC	1 cut(s)	396
BstMCI	CGRYCG	1 cut(s)	634
BstMWI	GCNNNNNNNGC	8 cut(s)	36, 94, 230, 368, 610, 616, 695, 698
BstSCI	CCNGG	2 cut(s)	233, 534
BstUI	CGCG	3 cut(s)	30, 97, 698
BstV1I	GCAGC	4 cut(s)	363, 622, 625, 628
BstV2I	GAAGAC	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	451
BveI	ACCTGC	1 cut(s)	434
Cac8I	GCNNGC	3 cut(s)	37, 95, 694
CfoI	GCGC	4 cut(s)	35, 99, 431, 698
Cfr13I	GGNCC	1 cut(s)	489
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	3 cut(s)	313, 385, 532
CviAII	CATG	3 cut(s)	220, 280, 433
CviJI	RGCY	6 cut(s)	224, 233, 371, 450, 519, 539
CviKI_1	RGCY	6 cut(s)	224, 233, 371, 450, 519, 539
CviQI	GTAC	3 cut(s)	313, 385, 532
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	254, 675
EarI	CTCTTC	2 cut(s)	254, 675
EciI	GGCGGA	3 cut(s)	380, 531, 716
Eco47I	GGWCC	1 cut(s)	489
Eco72I	CACGTG	1 cut(s)	607
Esp3I	CGTCTC	1 cut(s)	641
FaeI	CATG	3 cut(s)	223, 283, 436
FaiI	YATR	9 cut(s)	48, 50, 83, 132, 221, 266, 281, 410, 434
FaqI	GGGAC	2 cut(s)	290, 449
FatI	CATG	3 cut(s)	219, 279, 432
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	8 cut(s)	31, 363, 377, 611, 614, 617, 690, 699
Fsp4HI	GCNGC	8 cut(s)	31, 363, 377, 611, 614, 617, 690, 699
GlaI	GCGC	4 cut(s)	34, 98, 430, 697
GluI	GCNGC	8 cut(s)	31, 363, 377, 611, 614, 617, 690, 699
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	3 cut(s)	235, 351, 536
HgaI	GACGC	1 cut(s)	36
HhaI	GCGC	4 cut(s)	35, 99, 431, 698
Hin1I	GRCGYC	1 cut(s)	627
Hin1II	CATG	3 cut(s)	223, 283, 436
Hin6I	GCGC	4 cut(s)	33, 97, 429, 696
HinP1I	GCGC	4 cut(s)	33, 97, 429, 696
HincII	GTYRAC	2 cut(s)	549, 631
HindII	GTYRAC	2 cut(s)	549, 631
HinfI	GANTC	5 cut(s)	286, 292, 404, 469, 497
HpaI	GTTAAC	1 cut(s)	549
HpaII	CCGG	3 cut(s)	235, 351, 536
HphI	GGTGA	3 cut(s)	199, 445, 671
Hpy166II	GTNNAC	2 cut(s)	549, 631
Hpy188I	TCNGA	2 cut(s)	291, 442
Hpy188III	TCNNGA	3 cut(s)	136, 466, 492
Hpy8I	GTNNAC	2 cut(s)	549, 631
Hpy99I	CGWCG	3 cut(s)	385, 629, 632
HpyAV	CCTTC	4 cut(s)	264, 531, 583, 650
HpyCH4III	ACNGT	2 cut(s)	446, 635
HpyCH4IV	ACGT	5 cut(s)	167, 383, 462, 606, 627
HpyCH4V	TGCA	3 cut(s)	152, 604, 610
HpyF10VI	GCNNNNNNNGC	8 cut(s)	36, 94, 230, 368, 610, 616, 695, 698
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	5 cut(s)	167, 383, 462, 606, 627
Hsp92I	GRCGYC	1 cut(s)	627
Hsp92II	CATG	3 cut(s)	223, 283, 436
HspAI	GCGC	4 cut(s)	33, 97, 429, 696
KspAI	GTTAAC	1 cut(s)	549
Kzo9I	GATC	1 cut(s)	396
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	4 cut(s)	363, 622, 625, 628
LweI	GCATC	2 cut(s)	247, 522
MaeII	ACGT	5 cut(s)	167, 383, 462, 606, 627
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	4 cut(s)	183, 241, 433, 692
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	1 cut(s)	465
MseI	TTAA	2 cut(s)	213, 548
MspI	CCGG	3 cut(s)	235, 351, 536
MspR9I	CCNGG	2 cut(s)	235, 536
MvnI	CGCG	3 cut(s)	30, 97, 698
MwoI	GCNNNNNNNGC	8 cut(s)	36, 94, 230, 368, 610, 616, 695, 698
NciI	CCSGG	2 cut(s)	235, 536
NdeII	GATC	1 cut(s)	396
NlaIII	CATG	3 cut(s)	223, 283, 436
NlaIV	GGNNCC	1 cut(s)	540
NmeAIII	GCCGAG	1 cut(s)	564
PfeI	GAWTC	4 cut(s)	286, 292, 404, 469
PkrI	GCNGC	8 cut(s)	32, 364, 378, 612, 615, 618, 691, 700
PleI	GAGTC	1 cut(s)	491
PmaCI	CACGTG	1 cut(s)	607
PmlI	CACGTG	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	491
Ppu21I	YACGTR	1 cut(s)	607
Psp1406I	AACGTT	1 cut(s)	167
PspCI	CACGTG	1 cut(s)	607
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	1 cut(s)	489
RsaI	GTAC	3 cut(s)	314, 386, 533
RsaNI	GTAC	3 cut(s)	313, 385, 532
SalI	GTCGAC	1 cut(s)	629
SaqAI	TTAA	2 cut(s)	213, 548
SatI	GCNGC	8 cut(s)	31, 363, 377, 611, 614, 617, 690, 699
Sau3AI	GATC	1 cut(s)	396
Sau96I	GGNCC	1 cut(s)	489
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	2 cut(s)	235, 536
SetI	ASST	8 cut(s)	170, 386, 428, 458, 465, 609, 630, 661
SfaNI	GCATC	2 cut(s)	247, 522
SinI	GGWCC	1 cut(s)	489
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	9 cut(s)	6, 30, 362, 365, 487, 542, 689, 698, 701
StyD4I	CCNGG	2 cut(s)	233, 534
TaaI	ACNGT	2 cut(s)	446, 635
TaiI	ACGT	5 cut(s)	170, 386, 465, 609, 630
TaqI	TCGA	4 cut(s)	137, 624, 630, 673
TasI	AATT	1 cut(s)	146
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	4 cut(s)	33, 365, 692, 701
TfiI	GAWTC	4 cut(s)	286, 292, 404, 469
Tru1I	TTAA	2 cut(s)	213, 548
Tru9I	TTAA	2 cut(s)	213, 548
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	4 cut(s)	376, 610, 613, 616
TspDTI	ATGAA	3 cut(s)	161, 299, 449
TspGWI	ACGGA	5 cut(s)	33, 318, 348, 382, 666
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	489
XcmI	CCANNNNNNNNNTGG	2 cut(s)	217, 355
XmiI	GTMKAC	1 cut(s)	630
ZraI	GACGTC	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.