FvH4_3g15670

BOI-related E3 ubiquitin-protein ligase 3

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
9857768 .. 9859603
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15670.t1

Sequence Viewer

Length: 1020 bp
ATGGCCGTTGAAGCTCGGCACCTCAATCTCTTCCCCTCTCAACAACTCTTCTGCAACAACAGTGAGATCATGAACCCGGTTCAGGGAAACGGCGGCATGTACGGTGCTCAGATTGGGTACGGCGTGCCGATGATGACCGGCGGTTTGGTGGCGACGGAGGCTCTTCTTCCGGCGTATAATAACAACTCCATGATGAACGATTCCATGCTTCCGAAAACCACGGCGATGCAGTCGGACAGTGGGCTCACGTACAACGTACCGATCAGTACTTCTCTTTCAAGAAAGCGCTCCCGGGTCGACTCGATCAACCCGAACCCGAATCTCTTCTCCTACCCGACTCCTCCGGCGAGCCATCACTACAAGAACAGCAATAACTCATTCTCGTTTCTCGGCGAGGACATTTCTCTGCAAATCCAGCAGCAGCAGTTCGACATCGACCGCATCATTTCGCAACACATGGAGAAGGTGAGGCTGGAGATTGAGGAGAAGCGAAAGAGGCAAGCGAGGAGGATAATAGAGTCGATAGAGATGGGGATGATGAAGCGGCTGAGAGCCAAGGAGGTGGAGATCGAGAAAATCGGGAAGATGAACTGGGCTCTGGAAGAGAAGGTGAAGTCTCTTTGCATCGAGAATCAAATATGGCGCGACTTGGCGCAGACCAACGAGGCCACCGCCAATGCTCTCCGGACCAATCTCGAACAAGTCCTGGCCCAAGTGAAAGACGAGCCCAACCACAACAACCAAAACGACGCCGCGGCGGCGATGATGGACGACGCGCAGTCGTGCTGCGGGAGCACCGGAAACGACGACGGGTGGCGGGCAGTGGAGGAAGGGACGAGCGGCGGAAGCGGGTCGGGTTTAGGGAGTAGGTGGTGCAGGAATTGCGGGAAGGAGGAATCGTGTGTGTTGCTGTTGCCGTGTAGGCATCTGTGCTTGTGTACGGTCTGTGGGTCCTCCCTCCACACATGCCCAGTCTGTAAATCCACCAAGAACGCTAGTGTCCATGTTAACTTGTCTTAG

Protein Analysis

340

Amino Acids

37.49

Weight (kDa)

6.46

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 292 - 329 1.3e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 18
AccBSI CCGCTC 1 cut(s) 840
AccI GTMKAC 1 cut(s) 297
AccII CGCG 3 cut(s) 645, 755, 776
AccIII TCCGGA 1 cut(s) 684
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 750
AfaI GTAC 6 cut(s) 101, 119, 251, 258, 268, 940
AfeI AGCGCT 1 cut(s) 287
AfiI CCNNNNNNNGG 2 cut(s) 82, 83
AgsI TTSAA 2 cut(s) 11, 279
AhdI GACNNNNNGTC 1 cut(s) 778
AjnI CCWGG 1 cut(s) 705
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw21I GWGCWC 2 cut(s) 109, 797
Alw26I GTCTC 1 cut(s) 621
Ama87I CYCGRG 1 cut(s) 291
Aor13HI TCCGGA 1 cut(s) 684
Aor51HI AGCGCT 1 cut(s) 287
AoxI GGCC 3 cut(s) 3, 666, 708
ApeKI GCWGC 3 cut(s) 418, 421, 786
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
Asp700I GAANNNNTTC 1 cut(s) 323
AspLEI GCGC 4 cut(s) 288, 645, 655, 778
AspS9I GGNCC 3 cut(s) 687, 709, 951
AsuC2I CCSGG 3 cut(s) 77, 292, 293
AsuHPI GGTGA 2 cut(s) 478, 622
AvaI CYCGRG 1 cut(s) 291
AvaII GGWCC 2 cut(s) 687, 951
BanI GGYRCC 1 cut(s) 18
BanII GRGCYC 3 cut(s) 246, 598, 729
Bbv12I GWGCWC 2 cut(s) 109, 797
BbvI GCAGC 3 cut(s) 430, 433, 773
BccI CCATC 3 cut(s) 360, 523, 760
BceAI ACGGC 4 cut(s) 106, 136, 237, 901
BciT130I CCWGG 1 cut(s) 707
BcnI CCSGG 3 cut(s) 77, 292, 293
BcoDI GTCTC 1 cut(s) 621
BfaI CTAG 1 cut(s) 996
BfoI RGCGCY 1 cut(s) 289
BglI GCCNNNNNGGC 2 cut(s) 758, 922
BisI GCNGC 9 cut(s) 94, 419, 422, 545, 753, 756, 759, 787, 841
BlsI GCNGC 9 cut(s) 95, 420, 423, 546, 754, 757, 760, 788, 842
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 4 cut(s) 77, 292, 293, 707
Bme18I GGWCC 2 cut(s) 687, 951
BmeRI GACNNNNNGTC 1 cut(s) 778
BmeT110I CYCGRG 1 cut(s) 291
BmgT120I GGNCC 3 cut(s) 687, 709, 951
BmiI GGNNCC 2 cut(s) 20, 952
BmrFI CCNGG 4 cut(s) 77, 292, 293, 707
BmrI ACTGGG 2 cut(s) 601, 965
BmsI GCATC 4 cut(s) 216, 450, 633, 934
BmuI ACTGGG 2 cut(s) 601, 965
BpmI CTGGAG 1 cut(s) 494
BpuMI CCSGG 3 cut(s) 77, 292, 293
BsaAI YACGTR 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 750
BsaJI CCNNGG 4 cut(s) 219, 291, 555, 753
BsaWI WCCGGW 2 cut(s) 684, 797
BsaXI ACNNNNNCTCC 2 cut(s) 884, 914
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 83
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 596, 971
BseAI TCCGGA 1 cut(s) 684
BseBI CCWGG 1 cut(s) 707
BseDI CCNNGG 4 cut(s) 219, 291, 555, 753
BseGI GGATG 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 82, 83
BseMII CTCAG 2 cut(s) 122, 539
BseNI ACTGG 2 cut(s) 596, 971
BseRI GAGGAG 3 cut(s) 330, 497, 520
BseXI GCAGC 3 cut(s) 430, 433, 773
BsgI GTGCAG 1 cut(s) 895
Bsh1236I CGCG 3 cut(s) 645, 755, 776
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 3 cut(s) 5, 668, 710
BshNI GGYRCC 1 cut(s) 18
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 2 cut(s) 109, 797
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 7 cut(s) 77, 138, 170, 292, 344, 685, 798
BslFI GGGAC 1 cut(s) 847
BslI CCNNNNNNNGG 2 cut(s) 82, 83
BsmAI GTCTC 1 cut(s) 621
BsmFI GGGAC 1 cut(s) 847
BsnI GGCC 3 cut(s) 5, 668, 710
BsoBI CYCGRG 1 cut(s) 291
Bsp1286I GDGCHC 5 cut(s) 109, 246, 598, 729, 797
Bsp13I TCCGGA 1 cut(s) 684
Bsp143I GATC 4 cut(s) 66, 261, 303, 567
BspANI GGCC 3 cut(s) 5, 668, 710
BspCNI CTCAG 2 cut(s) 121, 540
BspEI TCCGGA 1 cut(s) 684
BspFNI CGCG 3 cut(s) 645, 755, 776
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 20, 952
BspQI GCTCTTC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 18
BsrBI CCGCTC 1 cut(s) 840
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 2 cut(s) 596, 971
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 4 cut(s) 219, 291, 555, 753
BssMI GATC 4 cut(s) 66, 261, 303, 567
BssNI GRCGYC 1 cut(s) 750
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 1 cut(s) 707
Bst4CI ACNGT 4 cut(s) 62, 104, 239, 943
Bst6I CTCTTC 5 cut(s) 35, 53, 168, 329, 597
BstACI GRCGYC 1 cut(s) 750
BstAPI GCANNNNNTGC 1 cut(s) 882
BstBAI YACGTR 1 cut(s) 249
BstC8I GCNNGC 4 cut(s) 125, 349, 501, 819
BstDEI CTNAG 3 cut(s) 108, 548, 1017
BstDSI CCRYGG 2 cut(s) 219, 753
BstF5I GGATG 1 cut(s) 540
BstFNI CGCG 3 cut(s) 645, 755, 776
BstH2I RGCGCY 1 cut(s) 289
BstHHI GCGC 4 cut(s) 288, 645, 655, 778
BstKTI GATC 4 cut(s) 69, 264, 306, 570
BstMAI GTCTC 1 cut(s) 621
BstMBI GATC 4 cut(s) 66, 261, 303, 567
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 9 cut(s) 11, 158, 415, 496, 758, 792, 846, 882, 922
BstNI CCWGG 1 cut(s) 707
BstNSI RCATGY 2 cut(s) 100, 969
BstSCI CCNGG 4 cut(s) 75, 290, 291, 705
BstUI CGCG 3 cut(s) 645, 755, 776
BstV1I GCAGC 3 cut(s) 430, 433, 773
BstXI CCANNNNNNTGG 1 cut(s) 562
BsuRI GGCC 3 cut(s) 5, 668, 710
BtgI CCRYGG 2 cut(s) 219, 753
BtgZI GCGATG 2 cut(s) 239, 776
BtsCI GGATG 1 cut(s) 540
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 3 cut(s) 67, 244, 828
Cac8I GCNNGC 4 cut(s) 125, 349, 501, 819
CciI TCATGA 1 cut(s) 69
CfoI GCGC 4 cut(s) 288, 645, 655, 778
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 3 cut(s) 687, 709, 951
Cfr42I CCGCGG 1 cut(s) 756
Cfr9I CCCGGG 1 cut(s) 291
CseI GACGC 2 cut(s) 758, 782
Csp6I GTAC 6 cut(s) 100, 118, 250, 257, 267, 939
CviAII CATG 7 cut(s) 70, 97, 190, 205, 457, 966, 1004
CviQI GTAC 6 cut(s) 100, 118, 250, 257, 267, 939
DdeI CTNAG 3 cut(s) 108, 548, 1017
DpnI GATC 4 cut(s) 68, 263, 305, 569
DpnII GATC 4 cut(s) 66, 261, 303, 567
DriI GACNNNNNGTC 1 cut(s) 778
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 5 cut(s) 35, 53, 168, 329, 597
Eam1105I GACNNNNNGTC 1 cut(s) 778
EarI CTCTTC 5 cut(s) 35, 53, 168, 329, 597
EciI GGCGGA 1 cut(s) 858
Eco130I CCWWGG 1 cut(s) 555
Eco24I GRGCYC 3 cut(s) 246, 598, 729
Eco47I GGWCC 2 cut(s) 687, 951
Eco47III AGCGCT 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 951
EcoRII CCWGG 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 555
EcoT38I GRGCYC 3 cut(s) 246, 598, 729
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 7 cut(s) 73, 100, 193, 208, 460, 969, 1007
FaiI YATR 9 cut(s) 71, 98, 177, 191, 206, 458, 640, 967, 1005
FaqI GGGAC 1 cut(s) 847
FatI CATG 7 cut(s) 69, 96, 189, 204, 456, 965, 1003
FauI CCCGC 4 cut(s) 782, 810, 842, 878
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 9 cut(s) 94, 419, 422, 545, 753, 756, 759, 787, 841
FokI GGATG 1 cut(s) 547
FriOI GRGCYC 3 cut(s) 246, 598, 729
Fsp4HI GCNGC 9 cut(s) 94, 419, 422, 545, 753, 756, 759, 787, 841
FspBI CTAG 1 cut(s) 996
GlaI GCGC 4 cut(s) 287, 644, 654, 777
GluI GCNGC 9 cut(s) 94, 419, 422, 545, 753, 756, 759, 787, 841
GsuI CTGGAG 1 cut(s) 494
HaeII RGCGCY 1 cut(s) 289
HaeIII GGCC 3 cut(s) 5, 668, 710
HapII CCGG 7 cut(s) 77, 138, 170, 292, 344, 685, 798
HgaI GACGC 2 cut(s) 758, 782
HhaI GCGC 4 cut(s) 288, 645, 655, 778
Hin1I GRCGYC 1 cut(s) 750
Hin1II CATG 7 cut(s) 73, 100, 193, 208, 460, 969, 1007
Hin6I GCGC 4 cut(s) 286, 643, 653, 776
HinP1I GCGC 4 cut(s) 286, 643, 653, 776
HincII GTYRAC 2 cut(s) 298, 1009
HindII GTYRAC 2 cut(s) 298, 1009
HinfI GANTC 7 cut(s) 200, 299, 319, 337, 518, 631, 896
HpaI GTTAAC 1 cut(s) 1009
HpaII CCGG 7 cut(s) 77, 138, 170, 292, 344, 685, 798
HphI GGTGA 2 cut(s) 478, 622
Hpy166II GTNNAC 3 cut(s) 298, 939, 1009
Hpy188I TCNGA 3 cut(s) 111, 213, 235
Hpy188III TCNNGA 8 cut(s) 70, 279, 571, 580, 599, 628, 685, 695
Hpy8I GTNNAC 3 cut(s) 298, 939, 1009
Hpy99I CGWCG 5 cut(s) 157, 752, 776, 809, 812
HpyAV CCTTC 4 cut(s) 457, 601, 824, 883
HpyCH4III ACNGT 4 cut(s) 62, 104, 239, 943
HpyCH4IV ACGT 2 cut(s) 248, 255
HpyCH4V TGCA 5 cut(s) 54, 229, 409, 624, 876
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 158, 415, 496, 758, 792, 846, 882, 922
HpyF3I CTNAG 3 cut(s) 108, 548, 1017
HpySE526I ACGT 2 cut(s) 248, 255
Hsp92I GRCGYC 1 cut(s) 750
Hsp92II CATG 7 cut(s) 73, 100, 193, 208, 460, 969, 1007
HspAI GCGC 4 cut(s) 286, 643, 653, 776
Kpn2I TCCGGA 1 cut(s) 684
KspAI GTTAAC 1 cut(s) 1009
KspI CCGCGG 1 cut(s) 756
Kzo9I GATC 4 cut(s) 66, 261, 303, 567
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 2 cut(s) 293, 792
Lsp1109I GCAGC 3 cut(s) 430, 433, 773
LweI GCATC 4 cut(s) 216, 450, 633, 934
MaeI CTAG 1 cut(s) 996
MaeII ACGT 2 cut(s) 248, 255
MalI GATC 4 cut(s) 68, 263, 305, 569
MbiI CCGCTC 1 cut(s) 840
MboI GATC 4 cut(s) 66, 261, 303, 567
MboII GAAGA 7 cut(s) 22, 40, 155, 158, 316, 595, 614
MhlI GDGCHC 5 cut(s) 109, 246, 598, 729, 797
MluCI AATT 1 cut(s) 880
MlyI GAGTC 3 cut(s) 293, 331, 527
MmeI TCCRAC 1 cut(s) 213
MroI TCCGGA 1 cut(s) 684
MroXI GAANNNNTTC 1 cut(s) 323
MseI TTAA 1 cut(s) 1008
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 755
MspI CCGG 7 cut(s) 77, 138, 170, 292, 344, 685, 798
MspR9I CCNGG 4 cut(s) 77, 292, 293, 707
MvaI CCWGG 1 cut(s) 707
MvnI CGCG 3 cut(s) 645, 755, 776
MwoI GCNNNNNNNGC 9 cut(s) 11, 158, 415, 496, 758, 792, 846, 882, 922
NciI CCSGG 3 cut(s) 77, 292, 293
NdeII GATC 4 cut(s) 66, 261, 303, 567
NlaIII CATG 7 cut(s) 73, 100, 193, 208, 460, 969, 1007
NlaIV GGNNCC 2 cut(s) 20, 952
NmeAIII GCCGAG 1 cut(s) 369
NspI RCATGY 2 cut(s) 100, 969
PagI TCATGA 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 4 cut(s) 200, 319, 631, 896
PkrI GCNGC 9 cut(s) 95, 420, 423, 546, 754, 757, 760, 788, 842
PleI GAGTC 3 cut(s) 293, 331, 526
PpsI GAGTC 3 cut(s) 293, 331, 526
Ppu21I YACGTR 1 cut(s) 249
PpuMI RGGWCCY 1 cut(s) 951
Psp5II RGGWCCY 1 cut(s) 951
Psp6I CCWGG 1 cut(s) 705
PspGI CCWGG 1 cut(s) 705
PspN4I GGNNCC 2 cut(s) 20, 952
PspPI GGNCC 3 cut(s) 687, 709, 951
PspPPI RGGWCCY 1 cut(s) 951
RsaI GTAC 6 cut(s) 101, 119, 251, 258, 268, 940
RsaNI GTAC 6 cut(s) 100, 118, 250, 257, 267, 939
RseI CAYNNNNRTG 1 cut(s) 224
SacII CCGCGG 1 cut(s) 756
SalI GTCGAC 1 cut(s) 296
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 1008
SatI GCNGC 9 cut(s) 94, 419, 422, 545, 753, 756, 759, 787, 841
Sau3AI GATC 4 cut(s) 66, 261, 303, 567
Sau96I GGNCC 3 cut(s) 687, 709, 951
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 3 cut(s) 293, 331, 527
ScrFI CCNGG 4 cut(s) 77, 292, 293, 707
SduI GDGCHC 5 cut(s) 109, 246, 598, 729, 797
SetI ASST 8 cut(s) 16, 24, 251, 258, 468, 564, 612, 872
SfaNI GCATC 4 cut(s) 216, 450, 633, 934
Sfr303I CCGCGG 1 cut(s) 756
SgrBI CCGCGG 1 cut(s) 756
SinI GGWCC 2 cut(s) 687, 951
SmaI CCCGGG 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 1 cut(s) 880
SspMI CTAG 1 cut(s) 996
StyD4I CCNGG 4 cut(s) 75, 290, 291, 705
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 4 cut(s) 62, 104, 239, 943
TaiI ACGT 2 cut(s) 251, 258
TaqI TCGA 8 cut(s) 297, 302, 429, 435, 521, 570, 627, 696
TasI AATT 1 cut(s) 880
TatI WGTACW 1 cut(s) 266
TauI GCSGC 6 cut(s) 96, 547, 755, 758, 761, 843
TfiI GAWTC 4 cut(s) 200, 319, 631, 896
Tru1I TTAA 1 cut(s) 1008
Tru9I TTAA 1 cut(s) 1008
TscAI CASTG 3 cut(s) 67, 244, 828
TseI GCWGC 3 cut(s) 418, 421, 786
TspDTI ATGAA 4 cut(s) 86, 209, 554, 602
TspGWI ACGGA 1 cut(s) 170
TspMI CCCGGG 1 cut(s) 291
TspRI CASTG 3 cut(s) 67, 244, 828
VpaK11BI GGWCC 2 cut(s) 687, 951
XceI RCATGY 2 cut(s) 100, 969
XmaI CCCGGG 1 cut(s) 291
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 1 cut(s) 996
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.