Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006011

Physical Location & Seq

Genomic Coordinates Reverse (-)

20257745 .. 20261024

Gene Structure 3280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG201800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAACCCGGTCCAGGGAAACGGGGGCATGTATAGTACCCAGATTGGGTACGGCGTGCCATTGATGATCGGCGGCGTTGTGGCGACGGAGGCTCTGCTTCCGGCGTATAATAATTCTGTGATGAACGATTCGATGCTTCCGAAAACGACGCCGTGCGCGGCGGCGATGCAGTCGGATAGTGGGCTCACCTACAACGTCCCGATCAGTACGACTCTCCCAAGAAAGCGCTCCCGGGTCGACTCGATCAACCCGAACCCGAACTTGTTCTCCTACCCGAGTGCTCCGGCGAGCCATCATTACAAGAACAACAACGACAACAACTCATTCTCGTTTCTCGGCGAGGACATTTCTCTGCAAATCCAGCAGCAGCAGTTCGACATCGACCGCCTCATTTCGCAACACATGGAGAAGGTGAGGTTAGAGATTGAAGAAAAGCGAAAGAGGCAAGCGAGGAGGATAATCGAGTCCATAGAAATGGGGATGATGAAGCGGCTGAGAGCCAAAGAGGTCGAGATCGAGAAAATCGGGAAGATGAATTGGGCTCTGGAAGAGAAGGTGAAGTCACTCTGCATAGAGAATCAAATATGGCGCGACTTGGCCCAGACCAACGAGGCCACCGCCAATGCTCTCCGGACCAACCTCGAACAAGTCCTGGCCCAGGTGAAAGTCGAGCCCAACAACAACCAAAACGACGCCGTGGAGGCGGCGCTGATGGACGACGCGCAGTCGTGCTGCGGGAGCAGCGGCGGAAACGACGAGGTAGGGTGGCGGGCGGTGAAGGGGGAGGAAGGGACAAGCGGGTCGGGTACAGCAAGTGGGAGTAGGTGGTGCAGGAATTGCGGGAAGGAGGAATCGTGTGTGTTGCTGTTGCCGTGTAGGCACCTGTGCTTGTGTACGGTCTGTGGGTCATCCCTCCACACTTGCCCAGTCTGTAAATCCACCAAGAACGCTAGTGTGCATGTTAACATGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006915 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0012501 GO:0016567 GO:0019222 GO:0019538 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0036211 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043154 GO:0043170 GO:0043281 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051865 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

324

Amino Acids

35.62

Weight (kDa)

6.6

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	277 - 314	1.2e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79110 AT1G79110 AT1G79110 AT3G12920
fragaria_vesca	FvH4_3g15670 FvH4_3g15670
malus_domestica	MD01G1028600.v1.1 MD01G1030500.v1.1 MD05G1220500.v1.1 MD10G1202900.v1.1
prunus_persica	Prupe.4G139400_v2.0.a1 Prupe.4G139400_v2.0.a1
pyrus_communis	pycom05g20390 pycom05g20400 pycom10g17350
rosa_chinensis	RchiOBHm_Chr5g0026341
rosa_laevigata	RLG00000032922
rosa_multiflora	Rmu_co8156202.1_g000001 Rmu_sc0005764.1_g000002 Rmu_sc0025146.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053010
rosa_rugosa	Rorug05G0092400.1
rosa_samantha	Rh5AG185600 Rh5BG182400 Rh5CG201800 Rh5DG184200
rosa_wichuraiana	Rw5G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	799
AccB1I	GGYRCC	1 cut(s)	879
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	3 cut(s)	158, 591, 722
AccIII	TCCGGA	1 cut(s)	630
AcyI	GRCGYC	2 cut(s)	149, 693
AfaI	GTAC	5 cut(s)	37, 50, 208, 808, 895
AfeI	AGCGCT	1 cut(s)	227
AfiI	CCNNNNNNNGG	4 cut(s)	13, 14, 45, 658
AflIII	ACRYGT	1 cut(s)	966
AgsI	TTSAA	1 cut(s)	428
AhdI	GACNNNNNGTC	1 cut(s)	724
AjnI	CCWGG	3 cut(s)	12, 651, 657
AloI	GAACNNNNNNTCC	2 cut(s)	251, 283
Alw21I	GWGCWC	1 cut(s)	283
Ama87I	CYCGRG	2 cut(s)	231, 274
Aor13HI	TCCGGA	1 cut(s)	630
Aor51HI	AGCGCT	1 cut(s)	227
AoxI	GGCC	3 cut(s)	597, 612, 654
ApeKI	GCWGC	4 cut(s)	364, 367, 732, 741
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	5 cut(s)	158, 228, 591, 709, 724
AspS9I	GGNCC	4 cut(s)	10, 598, 633, 655
AsuC2I	CCSGG	3 cut(s)	8, 232, 233
AsuHPI	GGTGA	5 cut(s)	178, 424, 568, 673, 787
AvaI	CYCGRG	2 cut(s)	231, 274
AvaII	GGWCC	2 cut(s)	10, 633
BanI	GGYRCC	1 cut(s)	879
BanII	GRGCYC	3 cut(s)	186, 544, 675
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	4 cut(s)	376, 379, 719, 753
BccI	CCATC	2 cut(s)	300, 706
BceAI	ACGGC	4 cut(s)	67, 136, 680, 856
BciT130I	CCWGG	3 cut(s)	14, 653, 659
BcnI	CCSGG	3 cut(s)	8, 232, 233
BfaI	CTAG	1 cut(s)	951
BfoI	RGCGCY	2 cut(s)	229, 710
BglI	GCCNNNNNGGC	2 cut(s)	701, 877
Bme1390I	CCNGG	6 cut(s)	8, 14, 232, 233, 653, 659
Bme18I	GGWCC	2 cut(s)	10, 633
BmeRI	GACNNNNNGTC	1 cut(s)	724
BmeT110I	CYCGRG	2 cut(s)	231, 274
BmgT120I	GGNCC	4 cut(s)	10, 598, 633, 655
BmiI	GGNNCC	1 cut(s)	881
BmrFI	CCNGG	6 cut(s)	8, 14, 232, 233, 653, 659
BmrI	ACTGGG	1 cut(s)	920
BmsI	GCATC	2 cut(s)	123, 156
BmuI	ACTGGG	1 cut(s)	920
BpuMI	CCSGG	3 cut(s)	8, 232, 233
BsaHI	GRCGYC	2 cut(s)	149, 693
BsaJI	CCNNGG	4 cut(s)	13, 231, 657, 696
BsaWI	WCCGGW	1 cut(s)	630
BsaXI	ACNNNNNCTCC	4 cut(s)	251, 281, 839, 869
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 14, 45, 658
Bse1I	ACTGG	1 cut(s)	926
BseAI	TCCGGA	1 cut(s)	630
BseBI	CCWGG	3 cut(s)	14, 653, 659
BseDI	CCNNGG	4 cut(s)	13, 231, 657, 696
BseGI	GGATG	2 cut(s)	486, 908
BseLI	CCNNNNNNNGG	4 cut(s)	13, 14, 45, 658
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	926
BseRI	GAGGAG	1 cut(s)	466
BseXI	GCAGC	4 cut(s)	376, 379, 719, 753
BsgI	GTGCAG	1 cut(s)	850
Bsh1236I	CGCG	3 cut(s)	158, 591, 722
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	3 cut(s)	599, 614, 656
BshNI	GGYRCC	1 cut(s)	879
BsiEI	CGRYCG	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	283
BsiHKCI	CYCGRG	2 cut(s)	231, 274
BsiSI	CCGG	5 cut(s)	8, 101, 232, 284, 631
BslFI	GGGAC	2 cut(s)	182, 805
BslI	CCNNNNNNNGG	4 cut(s)	13, 14, 45, 658
BsmFI	GGGAC	2 cut(s)	182, 805
BsnI	GGCC	3 cut(s)	599, 614, 656
BsoBI	CYCGRG	2 cut(s)	231, 274
Bsp1286I	GDGCHC	4 cut(s)	186, 283, 544, 675
Bsp13I	TCCGGA	1 cut(s)	630
Bsp143I	GATC	4 cut(s)	66, 201, 243, 513
BspANI	GGCC	3 cut(s)	599, 614, 656
BspCNI	CTCAG	1 cut(s)	486
BspEI	TCCGGA	1 cut(s)	630
BspFNI	CGCG	3 cut(s)	158, 591, 722
BspLI	GGNNCC	1 cut(s)	881
BspT107I	GGYRCC	1 cut(s)	879
BsrI	ACTGG	1 cut(s)	926
BssECI	CCNNGG	4 cut(s)	13, 231, 657, 696
BssMI	GATC	4 cut(s)	66, 201, 243, 513
BssNI	GRCGYC	2 cut(s)	149, 693
Bst2UI	CCWGG	3 cut(s)	14, 653, 659
Bst4CI	ACNGT	1 cut(s)	898
Bst6I	CTCTTC	1 cut(s)	543
BstACI	GRCGYC	2 cut(s)	149, 693
BstAPI	GCANNNNNTGC	1 cut(s)	837
BstC8I	GCNNGC	4 cut(s)	56, 289, 447, 771
BstDEI	CTNAG	2 cut(s)	494, 972
BstDSI	CCRYGG	1 cut(s)	696
BstENI	CCTNNNNNAGG	1 cut(s)	656
BstF5I	GGATG	2 cut(s)	486, 908
BstFNI	CGCG	3 cut(s)	158, 591, 722
BstH2I	RGCGCY	2 cut(s)	229, 710
BstHHI	GCGC	5 cut(s)	158, 228, 591, 709, 724
BstKTI	GATC	4 cut(s)	69, 204, 246, 516
BstMBI	GATC	4 cut(s)	66, 201, 243, 513
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 361, 442, 701, 738, 741, 837, 877
BstNI	CCWGG	3 cut(s)	14, 653, 659
BstNSI	RCATGY	3 cut(s)	31, 962, 970
BstSCI	CCNGG	6 cut(s)	6, 12, 230, 231, 651, 657
BstUI	CGCG	3 cut(s)	158, 591, 722
BstV1I	GCAGC	4 cut(s)	376, 379, 719, 753
BstXI	CCANNNNNNTGG	1 cut(s)	475
BsuRI	GGCC	3 cut(s)	599, 614, 656
BtgI	CCRYGG	1 cut(s)	696
BtgZI	GCGATG	1 cut(s)	179
BtsCI	GGATG	2 cut(s)	486, 908
Cac8I	GCNNGC	4 cut(s)	56, 289, 447, 771
CfoI	GCGC	5 cut(s)	158, 228, 591, 709, 724
Cfr13I	GGNCC	4 cut(s)	10, 598, 633, 655
Cfr9I	CCCGGG	1 cut(s)	231
CseI	GACGC	3 cut(s)	157, 701, 728
Csp6I	GTAC	5 cut(s)	36, 49, 207, 807, 894
CviAII	CATG	4 cut(s)	28, 403, 959, 967
CviQI	GTAC	5 cut(s)	36, 49, 207, 807, 894
DdeI	CTNAG	2 cut(s)	494, 972
DpnI	GATC	4 cut(s)	68, 203, 245, 515
DpnII	GATC	4 cut(s)	66, 201, 243, 513
DrdI	GACNNNNNNGTC	1 cut(s)	799
DriI	GACNNNNNGTC	1 cut(s)	724
DseDI	GACNNNNNNGTC	1 cut(s)	799
Eam1104I	CTCTTC	1 cut(s)	543
Eam1105I	GACNNNNNGTC	1 cut(s)	724
EarI	CTCTTC	1 cut(s)	543
EciI	GGCGGA	1 cut(s)	762
Eco24I	GRGCYC	3 cut(s)	186, 544, 675
Eco47I	GGWCC	2 cut(s)	10, 633
Eco47III	AGCGCT	1 cut(s)	227
Eco88I	CYCGRG	2 cut(s)	231, 274
EcoNI	CCTNNNNNAGG	1 cut(s)	656
EcoRII	CCWGG	3 cut(s)	12, 651, 657
EcoT38I	GRGCYC	3 cut(s)	186, 544, 675
FaeI	CATG	4 cut(s)	31, 406, 962, 970
FaiI	YATR	9 cut(s)	29, 33, 108, 404, 470, 572, 586, 960, 968
FaqI	GGGAC	2 cut(s)	182, 805
FatI	CATG	4 cut(s)	27, 402, 958, 966
FauI	CCCGC	4 cut(s)	728, 762, 791, 833
FblI	GTMKAC	1 cut(s)	237
FokI	GGATG	2 cut(s)	493, 895
FriOI	GRGCYC	3 cut(s)	186, 544, 675
FspBI	CTAG	1 cut(s)	951
GlaI	GCGC	5 cut(s)	157, 227, 590, 708, 723
HaeII	RGCGCY	2 cut(s)	229, 710
HaeIII	GGCC	3 cut(s)	599, 614, 656
HapII	CCGG	5 cut(s)	8, 101, 232, 284, 631
HgaI	GACGC	3 cut(s)	157, 701, 728
HhaI	GCGC	5 cut(s)	158, 228, 591, 709, 724
Hin1I	GRCGYC	2 cut(s)	149, 693
Hin1II	CATG	4 cut(s)	31, 406, 962, 970
Hin6I	GCGC	5 cut(s)	156, 226, 589, 707, 722
HinP1I	GCGC	5 cut(s)	156, 226, 589, 707, 722
HincII	GTYRAC	2 cut(s)	238, 964
HindII	GTYRAC	2 cut(s)	238, 964
HinfI	GANTC	6 cut(s)	128, 211, 239, 464, 577, 851
HpaI	GTTAAC	1 cut(s)	964
HpaII	CCGG	5 cut(s)	8, 101, 232, 284, 631
HphI	GGTGA	5 cut(s)	178, 424, 568, 673, 787
Hpy166II	GTNNAC	3 cut(s)	238, 894, 964
Hpy188I	TCNGA	2 cut(s)	141, 175
Hpy188III	TCNNGA	6 cut(s)	199, 511, 517, 526, 545, 631
Hpy8I	GTNNAC	3 cut(s)	238, 894, 964
Hpy99I	CGWCG	5 cut(s)	88, 151, 695, 722, 758
HpyAV	CCTTC	5 cut(s)	403, 547, 772, 782, 838
HpyCH4III	ACNGT	1 cut(s)	898
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	5 cut(s)	169, 355, 570, 831, 958
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 361, 442, 701, 738, 741, 837, 877
HpyF3I	CTNAG	2 cut(s)	494, 972
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	2 cut(s)	149, 693
Hsp92II	CATG	4 cut(s)	31, 406, 962, 970
HspAI	GCGC	5 cut(s)	156, 226, 589, 707, 722
Kpn2I	TCCGGA	1 cut(s)	630
KspAI	GTTAAC	1 cut(s)	964
Kzo9I	GATC	4 cut(s)	66, 201, 243, 513
LmnI	GCTCC	3 cut(s)	233, 286, 738
Lsp1109I	GCAGC	4 cut(s)	376, 379, 719, 753
LweI	GCATC	2 cut(s)	123, 156
MaeI	CTAG	1 cut(s)	951
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	561
MalI	GATC	4 cut(s)	68, 203, 245, 515
MboI	GATC	4 cut(s)	66, 201, 243, 513
MboII	GAAGA	3 cut(s)	440, 541, 560
MhlI	GDGCHC	4 cut(s)	186, 283, 544, 675
MluCI	AATT	3 cut(s)	112, 535, 835
MlyI	GAGTC	3 cut(s)	205, 233, 473
MmeI	TCCRAC	1 cut(s)	153
MroI	TCCGGA	1 cut(s)	630
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	963
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	744
MspI	CCGG	5 cut(s)	8, 101, 232, 284, 631
MspR9I	CCNGG	6 cut(s)	8, 14, 232, 233, 653, 659
MvaI	CCWGG	3 cut(s)	14, 653, 659
MvnI	CGCG	3 cut(s)	158, 591, 722
MwoI	GCNNNNNNNGC	8 cut(s)	89, 361, 442, 701, 738, 741, 837, 877
NciI	CCSGG	3 cut(s)	8, 232, 233
NdeII	GATC	4 cut(s)	66, 201, 243, 513
NlaIII	CATG	4 cut(s)	31, 406, 962, 970
NlaIV	GGNNCC	1 cut(s)	881
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	561
NspI	RCATGY	3 cut(s)	31, 962, 970
PciI	ACATGT	1 cut(s)	966
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 248
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	128, 577, 851
PleI	GAGTC	3 cut(s)	205, 233, 472
PpsI	GAGTC	3 cut(s)	205, 233, 472
PscI	ACATGT	1 cut(s)	966
Psp6I	CCWGG	3 cut(s)	12, 651, 657
PspGI	CCWGG	3 cut(s)	12, 651, 657
PspN4I	GGNNCC	1 cut(s)	881
PspPI	GGNCC	4 cut(s)	10, 598, 633, 655
RsaI	GTAC	5 cut(s)	37, 50, 208, 808, 895
RsaNI	GTAC	5 cut(s)	36, 49, 207, 807, 894
RseI	CAYNNNNRTG	1 cut(s)	473
SalI	GTCGAC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	963
Sau3AI	GATC	4 cut(s)	66, 201, 243, 513
Sau96I	GGNCC	4 cut(s)	10, 598, 633, 655
SchI	GAGTC	3 cut(s)	205, 233, 473
ScrFI	CCNGG	6 cut(s)	8, 14, 232, 233, 653, 659
SduI	GDGCHC	4 cut(s)	186, 283, 544, 675
SfaNI	GCATC	2 cut(s)	123, 156
SinI	GGWCC	2 cut(s)	10, 633
SmaI	CCCGGG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	473
Sse9I	AATT	3 cut(s)	112, 535, 835
SspMI	CTAG	1 cut(s)	951
StyD4I	CCNGG	6 cut(s)	6, 12, 230, 231, 651, 657
TaaI	ACNGT	1 cut(s)	898
TaiI	ACGT	1 cut(s)	198
TasI	AATT	3 cut(s)	112, 535, 835
TauI	GCSGC	6 cut(s)	75, 161, 164, 493, 707, 747
TfiI	GAWTC	3 cut(s)	128, 577, 851
Tru1I	TTAA	1 cut(s)	963
Tru9I	TTAA	1 cut(s)	963
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	4 cut(s)	364, 367, 732, 741
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	4 cut(s)	17, 137, 500, 548
TspGWI	ACGGA	1 cut(s)	101
TspMI	CCCGGG	1 cut(s)	231
VpaK11BI	GGWCC	2 cut(s)	10, 633
XagI	CCTNNNNNAGG	1 cut(s)	656
XceI	RCATGY	3 cut(s)	31, 962, 970
XmaI	CCCGGG	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.