Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006011

Physical Location & Seq

Genomic Coordinates Forward (+)

23163520 .. 23163993

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGGAAACTGAATTGGGCGCTGGAAGAGCGGGTCAAGTCGTTGTGCGTAGAGAATCAAATATGGCGCGACCTGGCTCAGACCAACGAAGCCACCGCCAATGCCCTCCGCACCAACCTCGAGCAGGTCCTGGCTCACCATGCTAAGGACGACGACAACCGGCAAAACGACGCCAACGCCGCCGCGCTCATGGATGACGCCCAGTCATGCTGCGGAAGCAGCGGCGGGGACGAGGGTCGAAACGACGGAGTCGTGGGGTTAGACGGGTGGCGCACTGTCAAGGGTACTATTAATGCTAAAGCTGCGGAGGGGCATGTCGGGGATGAAGGTACAAGCGGGGCATGCGGGTCGAGTACAAGTAGGTGGTGCAGGAGTTGCGGGAAGGAGGAGGCCTGCGTGTTGCTTTTGCCGTGCCGGCACCTTTGCTTGTGCACGGTGTGTGGATCGATCGCTGCATACTTGCCCCATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006915 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0012501 GO:0016567 GO:0019222 GO:0019538 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0036211 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043154 GO:0043170 GO:0043281 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051865 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

158

Amino Acids

16.7

Weight (kDa)

5.29

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79110 AT1G79110 AT1G79110 AT3G12920
fragaria_vesca	FvH4_3g15670 FvH4_3g15670
malus_domestica	MD01G1028600.v1.1 MD01G1030500.v1.1 MD05G1220500.v1.1 MD10G1202900.v1.1
prunus_persica	Prupe.4G139400_v2.0.a1 Prupe.4G139400_v2.0.a1
pyrus_communis	pycom05g20390 pycom05g20400 pycom10g17350
rosa_chinensis	RchiOBHm_Chr5g0026341
rosa_laevigata	RLG00000032922
rosa_multiflora	Rmu_co8156202.1_g000001 Rmu_sc0005764.1_g000002 Rmu_sc0025146.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053010
rosa_rugosa	Rorug05G0092400.1
rosa_samantha	Rh5AG185600 Rh5BG182400 Rh5CG201800 Rh5DG184200
rosa_wichuraiana	Rw5G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	115
AccB1I	GGYRCC	1 cut(s)	417
AccBSI	CCGCTC	1 cut(s)	31
AccII	CGCG	2 cut(s)	69, 185
AclWI	GGATC	1 cut(s)	451
AcyI	GRCGYC	2 cut(s)	171, 198
AdeI	CACNNNGTG	1 cut(s)	438
AfaI	GTAC	3 cut(s)	286, 331, 355
AfiI	CCNNNNNNNGG	2 cut(s)	124, 145
AhdI	GACNNNNNGTC	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	72, 129
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw21I	GWGCWC	1 cut(s)	434
Alw44I	GTGCAC	1 cut(s)	430
AlwI	GGATC	1 cut(s)	451
AlwNI	CAGNNNCTG	1 cut(s)	130
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	390
ApaLI	GTGCAC	1 cut(s)	430
ApeKI	GCWGC	4 cut(s)	210, 219, 302, 452
AseI	ATTAAT	1 cut(s)	291
AspLEI	GCGC	4 cut(s)	22, 69, 187, 273
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	434
BbvI	GCAGC	4 cut(s)	197, 231, 289, 439
BceAI	ACGGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	4 cut(s)	100, 134, 330, 364
BciT130I	CCWGG	2 cut(s)	74, 131
BfoI	RGCGCY	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	115
BglI	GCCNNNNNGGC	1 cut(s)	415
BisI	GCNGC	7 cut(s)	180, 183, 211, 220, 223, 303, 453
BlsI	GCNGC	7 cut(s)	181, 184, 212, 221, 224, 304, 454
Bme1390I	CCNGG	2 cut(s)	74, 131
Bme18I	GGWCC	1 cut(s)	127
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	419
BmrFI	CCNGG	2 cut(s)	74, 131
BmrI	ACTGGG	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	196
BoxI	GACNNNNGTC	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	144
Bsa29I	ATCGAT	1 cut(s)	446
BsaHI	GRCGYC	2 cut(s)	171, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 145
Bse118I	RCCGGY	2 cut(s)	159, 414
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	2 cut(s)	74, 131
BseCI	ATCGAT	1 cut(s)	446
BseGI	GGATG	2 cut(s)	199, 328
BseLI	CCNNNNNNNGG	2 cut(s)	124, 145
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	1 cut(s)	401
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	4 cut(s)	197, 231, 289, 439
BsgI	GTGCAG	1 cut(s)	388
Bsh1236I	CGCG	2 cut(s)	69, 185
Bsh1285I	CGRYCG	1 cut(s)	450
BshFI	GGCC	1 cut(s)	392
BshNI	GGYRCC	1 cut(s)	417
BshVI	ATCGAT	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	434
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	160, 415
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	124, 145
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	2 cut(s)	443, 447
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	1 cut(s)	91
BspDI	ATCGAT	1 cut(s)	446
BspFNI	CGCG	2 cut(s)	69, 185
BspLI	GGNNCC	1 cut(s)	419
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	451
BspQI	GCTCTTC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	417
BsrBI	CCGCTC	1 cut(s)	31
BsrFI	RCCGGY	2 cut(s)	159, 414
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	2 cut(s)	159, 414
BssMI	GATC	2 cut(s)	443, 447
BssNI	GRCGYC	2 cut(s)	171, 198
Bst2UI	CCWGG	2 cut(s)	74, 131
Bst4CI	ACNGT	2 cut(s)	277, 436
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	2 cut(s)	171, 198
BstAPI	GCANNNNNTGC	1 cut(s)	375
BstC8I	GCNNGC	3 cut(s)	343, 394, 416
BstDEI	CTNAG	2 cut(s)	78, 144
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	199, 328
BstFNI	CGCG	2 cut(s)	69, 185
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	4 cut(s)	22, 69, 187, 273
BstKTI	GATC	2 cut(s)	446, 450
BstMBI	GATC	2 cut(s)	443, 447
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	9 cut(s)	28, 140, 179, 216, 219, 302, 342, 375, 415
BstNI	CCWGG	2 cut(s)	74, 131
BstNSI	RCATGY	2 cut(s)	317, 345
BstPAI	GACNNNNGTC	1 cut(s)	234
BstSCI	CCNGG	2 cut(s)	72, 129
BstSLI	GKGCMC	1 cut(s)	434
BstUI	CGCG	2 cut(s)	69, 185
BstV1I	GCAGC	4 cut(s)	197, 231, 289, 439
Bsu15I	ATCGAT	1 cut(s)	446
BsuRI	GGCC	1 cut(s)	392
BsuTUI	ATCGAT	1 cut(s)	446
BtsCI	GGATG	2 cut(s)	199, 328
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	3 cut(s)	343, 394, 416
CaiI	CAGNNNCTG	1 cut(s)	130
CfoI	GCGC	4 cut(s)	22, 69, 187, 273
Cfr10I	RCCGGY	2 cut(s)	159, 414
Cfr13I	GGNCC	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	446
CseI	GACGC	2 cut(s)	179, 206
Csp6I	GTAC	3 cut(s)	285, 330, 354
CviAII	CATG	5 cut(s)	140, 190, 207, 314, 342
CviJI	RGCY	5 cut(s)	77, 92, 134, 302, 392
CviKI_1	RGCY	5 cut(s)	77, 92, 134, 302, 392
CviQI	GTAC	3 cut(s)	285, 330, 354
DdeI	CTNAG	2 cut(s)	78, 144
DpnI	GATC	2 cut(s)	445, 449
DpnII	GATC	2 cut(s)	443, 447
DraIII	CACNNNGTG	1 cut(s)	438
DriI	GACNNNNNGTC	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	21
Eam1105I	GACNNNNNGTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	127
EcoRII	CCWGG	2 cut(s)	72, 129
FaeI	CATG	5 cut(s)	143, 193, 210, 317, 345
FaiI	YATR	7 cut(s)	64, 141, 191, 208, 315, 343, 457
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	5 cut(s)	139, 189, 206, 313, 341
FauI	CCCGC	5 cut(s)	24, 218, 329, 338, 371
Fnu4HI	GCNGC	7 cut(s)	180, 183, 211, 220, 223, 303, 453
FokI	GGATG	2 cut(s)	206, 335
Fsp4HI	GCNGC	7 cut(s)	180, 183, 211, 220, 223, 303, 453
GlaI	GCGC	4 cut(s)	21, 68, 186, 272
GluI	GCNGC	7 cut(s)	180, 183, 211, 220, 223, 303, 453
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	2 cut(s)	160, 415
HgaI	GACGC	2 cut(s)	179, 206
HhaI	GCGC	4 cut(s)	22, 69, 187, 273
Hin1I	GRCGYC	2 cut(s)	171, 198
Hin1II	CATG	5 cut(s)	143, 193, 210, 317, 345
Hin6I	GCGC	4 cut(s)	20, 67, 185, 271
HinP1I	GCGC	4 cut(s)	20, 67, 185, 271
HinfI	GANTC	2 cut(s)	55, 249
HpaII	CCGG	2 cut(s)	160, 415
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	1 cut(s)	81
Hpy8I	GTNNAC	1 cut(s)	432
Hpy99I	CGWCG	3 cut(s)	155, 173, 248
HpyAV	CCTTC	2 cut(s)	320, 376
HpyCH4III	ACNGT	2 cut(s)	277, 436
HpyCH4V	TGCA	3 cut(s)	369, 432, 455
HpyF10VI	GCNNNNNNNGC	9 cut(s)	28, 140, 179, 216, 219, 302, 342, 375, 415
HpyF3I	CTNAG	2 cut(s)	78, 144
Hsp92I	GRCGYC	2 cut(s)	171, 198
Hsp92II	CATG	5 cut(s)	143, 193, 210, 317, 345
HspAI	GCGC	4 cut(s)	20, 67, 185, 271
KroI	GCCGGC	1 cut(s)	414
KroNI	GCCGGC	1 cut(s)	416
Kzo9I	GATC	2 cut(s)	443, 447
LguI	GCTCTTC	1 cut(s)	21
Lsp1109I	GCAGC	4 cut(s)	197, 231, 289, 439
MalI	GATC	2 cut(s)	445, 449
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	2 cut(s)	443, 447
MboII	GAAGA	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	1 cut(s)	13
MlyI	GAGTC	1 cut(s)	258
MnlI	CCTC	6 cut(s)	116, 128, 226, 301, 379, 382
MroNI	GCCGGC	1 cut(s)	414
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	2 cut(s)	160, 415
MspR9I	CCNGG	2 cut(s)	74, 131
MvaI	CCWGG	2 cut(s)	74, 131
MvnI	CGCG	2 cut(s)	69, 185
MwoI	GCNNNNNNNGC	9 cut(s)	28, 140, 179, 216, 219, 302, 342, 375, 415
NaeI	GCCGGC	1 cut(s)	416
NdeII	GATC	2 cut(s)	443, 447
NgoMIV	GCCGGC	1 cut(s)	414
NlaIII	CATG	5 cut(s)	143, 193, 210, 317, 345
NlaIV	GGNNCC	1 cut(s)	419
NspI	RCATGY	2 cut(s)	317, 345
PaeI	GCATGC	1 cut(s)	345
PaeR7I	CTCGAG	1 cut(s)	119
PceI	AGGCCT	1 cut(s)	392
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdiI	GCCGGC	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	55
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	7 cut(s)	181, 184, 212, 221, 224, 304, 454
Ple19I	CGATCG	1 cut(s)	450
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	127
PshAI	GACNNNNGTC	1 cut(s)	234
PshBI	ATTAAT	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	72, 129
PspGI	CCWGG	2 cut(s)	72, 129
PspN4I	GGNNCC	1 cut(s)	419
PspPI	GGNCC	1 cut(s)	127
PspPPI	RGGWCCY	1 cut(s)	127
PspXI	VCTCGAGB	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	130
PsyI	GACNNNGTC	1 cut(s)	248
PvuI	CGATCG	1 cut(s)	450
RsaI	GTAC	3 cut(s)	286, 331, 355
RsaNI	GTAC	3 cut(s)	285, 330, 354
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	7 cut(s)	180, 183, 211, 220, 223, 303, 453
Sau3AI	GATC	2 cut(s)	443, 447
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	2 cut(s)	74, 131
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	7 cut(s)	75, 120, 129, 304, 331, 365, 423
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	127
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SphI	GCATGC	1 cut(s)	345
Sse9I	AATT	1 cut(s)	13
SseBI	AGGCCT	1 cut(s)	392
StuI	AGGCCT	1 cut(s)	392
StyD4I	CCNGG	2 cut(s)	72, 129
TaaI	ACNGT	2 cut(s)	277, 436
TaqI	TCGA	4 cut(s)	120, 238, 350, 446
TasI	AATT	1 cut(s)	13
TatI	WGTACW	1 cut(s)	353
TauI	GCSGC	3 cut(s)	182, 185, 225
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	4 cut(s)	210, 219, 302, 452
TspDTI	ATGAA	1 cut(s)	339
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	1 cut(s)	280
Tth111I	GACNNNGTC	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	127
VspI	ATTAAT	1 cut(s)	291
XagI	CCTNNNNNAGG	1 cut(s)	122
XceI	RCATGY	2 cut(s)	317, 345
XhoI	CTCGAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.