Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025146.1

Orthogroup ID

OG0006011

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 749

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025146.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 551 bp

atggccgttcaagctcgccacctcaatctcttcccctctcaacaactcctctgcaacaacagcgaaatcatgaacccggtccagggaaacgggggcatgtatagtactcagattgggtacggcgtgccattgatgaccggcggcgttgtggccacggaggctctgcttccggcgtataataattctgtgatgaacgattccatgcttccgaaaacgacgccgtgcgcggcggcgatgcagtcggatagtgggctcacctacaacgtcccgatcagtacgagtctcccaagaaagcgctcccgggtcgactcgatcaacccgaacccgaacttgttctcctacccgactgctccggcgagccatcattacaagaacaacaacgacaaccacaactcattctcgtttctcggcgaggacatttctttgcaaatccagcagcagcagttcgacatcgaccgcctcatttcgcaacacatggagaaggtgaggttggagattgaagaaaagcgaaagaggcaagcgaggaggataatcgagtccatagaaatggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006915 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0012501 GO:0016567 GO:0019222 GO:0019538 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0036211 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043154 GO:0043170 GO:0043281 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051865 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

184

Amino Acids

20.55

Weight (kDa)

6.96

Isoelectric Point (pI)

65.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79110 AT1G79110 AT1G79110 AT3G12920
fragaria_vesca	FvH4_3g15670 FvH4_3g15670
malus_domestica	MD01G1028600.v1.1 MD01G1030500.v1.1 MD05G1220500.v1.1 MD10G1202900.v1.1
prunus_persica	Prupe.4G139400_v2.0.a1 Prupe.4G139400_v2.0.a1
pyrus_communis	pycom05g20390 pycom05g20400 pycom10g17350
rosa_chinensis	RchiOBHm_Chr5g0026341
rosa_laevigata	RLG00000032922
rosa_multiflora	Rmu_co8156202.1_g000001 Rmu_sc0005764.1_g000002 Rmu_sc0025146.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053010
rosa_rugosa	Rorug05G0092400.1
rosa_samantha	Rh5AG185600 Rh5BG182400 Rh5CG201800 Rh5DG184200
rosa_wichuraiana	Rw5G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	306
AccII	CGCG	1 cut(s)	227
AciI	CCGC	4 cut(s)	141, 227, 230, 457
AcoI	YGGCCR	2 cut(s)	3, 150
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	3 cut(s)	106, 119, 277
AfeI	AGCGCT	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	82, 83
AgsI	TTSAA	2 cut(s)	11, 500
AjnI	CCWGG	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AloI	GAACNNNNNNTCC	2 cut(s)	320, 352
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	300
Aor51HI	AGCGCT	1 cut(s)	296
AoxI	GGCC	2 cut(s)	3, 150
ApeKI	GCWGC	2 cut(s)	436, 439
Asp700I	GAANNNNTTC	1 cut(s)	332
AspLEI	GCGC	2 cut(s)	227, 297
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	3 cut(s)	77, 301, 302
AsuHPI	GGTGA	2 cut(s)	247, 496
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	448, 451
BccI	CCATC	1 cut(s)	369
BceAI	ACGGC	2 cut(s)	136, 205
BciT130I	CCWGG	1 cut(s)	83
BcnI	CCSGG	3 cut(s)	77, 301, 302
BcoDI	GTCTC	1 cut(s)	287
BfoI	RGCGCY	1 cut(s)	298
BglI	GCCNNNNNGGC	1 cut(s)	158
BisI	GCNGC	5 cut(s)	142, 228, 231, 437, 440
BlsI	GCNGC	5 cut(s)	143, 229, 232, 438, 441
BmcAI	AGTACT	1 cut(s)	106
Bme1390I	CCNGG	4 cut(s)	77, 83, 301, 302
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	79
BmrFI	CCNGG	4 cut(s)	77, 83, 301, 302
BmsI	GCATC	1 cut(s)	225
BpuMI	CCSGG	3 cut(s)	77, 301, 302
BsaHI	GRCGYC	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	82, 153, 300
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 83
Bse118I	RCCGGY	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	82, 153, 300
BseLI	CCNNNNNNNGG	2 cut(s)	82, 83
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	2 cut(s)	38, 538
BseXI	GCAGC	2 cut(s)	448, 451
Bsh1236I	CGCG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	2 cut(s)	5, 152
BsiEI	CGRYCG	1 cut(s)	457
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	5 cut(s)	77, 138, 170, 301, 353
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	82, 83
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	5, 152
BsoBI	CYCGRG	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	270, 312
BspACI	CCGC	4 cut(s)	141, 227, 230, 457
BspANI	GGCC	2 cut(s)	5, 152
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	3 cut(s)	82, 153, 300
BssMI	GATC	2 cut(s)	270, 312
BssNI	GRCGYC	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	218
BstC8I	GCNNGC	4 cut(s)	16, 125, 358, 519
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	227, 297
BstKTI	GATC	2 cut(s)	273, 315
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	2 cut(s)	270, 312
BstMCI	CGRYCG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 60, 158, 433, 514
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	4 cut(s)	75, 81, 299, 300
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	448, 451
BstXI	CCANNNNNNTGG	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	5, 152
BtgI	CCRYGG	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	248
Cac8I	GCNNGC	4 cut(s)	16, 125, 358, 519
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	2 cut(s)	227, 297
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	79
Cfr9I	CCCGGG	1 cut(s)	300
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	3 cut(s)	105, 118, 276
CviAII	CATG	4 cut(s)	70, 97, 202, 475
CviJI	RGCY	6 cut(s)	5, 14, 152, 161, 253, 360
CviKI_1	RGCY	6 cut(s)	5, 14, 152, 161, 253, 360
CviQI	GTAC	3 cut(s)	105, 118, 276
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	2 cut(s)	272, 314
DpnII	GATC	2 cut(s)	270, 312
EaeI	YGGCCR	2 cut(s)	3, 150
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	79
Eco47III	AGCGCT	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	4 cut(s)	73, 100, 205, 478
FaiI	YATR	7 cut(s)	71, 98, 102, 177, 203, 476, 542
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	4 cut(s)	69, 96, 201, 474
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	5 cut(s)	142, 228, 231, 437, 440
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	5 cut(s)	142, 228, 231, 437, 440
GlaI	GCGC	2 cut(s)	226, 296
GluI	GCNGC	5 cut(s)	142, 228, 231, 437, 440
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	2 cut(s)	5, 152
HapII	CCGG	5 cut(s)	77, 138, 170, 301, 353
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	2 cut(s)	227, 297
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	4 cut(s)	73, 100, 205, 478
Hin6I	GCGC	2 cut(s)	225, 295
HinP1I	GCGC	2 cut(s)	225, 295
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	4 cut(s)	197, 280, 308, 536
HpaII	CCGG	5 cut(s)	77, 138, 170, 301, 353
HphI	GGTGA	2 cut(s)	247, 496
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	3 cut(s)	111, 210, 244
Hpy188III	TCNNGA	2 cut(s)	70, 268
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	475
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	54, 238, 427
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 60, 158, 433, 514
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	4 cut(s)	73, 100, 205, 478
HspAI	GCGC	2 cut(s)	225, 295
Kzo9I	GATC	2 cut(s)	270, 312
LmnI	GCTCC	2 cut(s)	302, 355
LpnPI	CCDG	8 cut(s)	68, 90, 95, 151, 183, 314, 366, 446
Lsp1109I	GCAGC	2 cut(s)	448, 451
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	1 cut(s)	264
MalI	GATC	2 cut(s)	272, 314
MboI	GATC	2 cut(s)	270, 312
MboII	GAAGA	2 cut(s)	22, 512
MhlI	GDGCHC	1 cut(s)	255
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	1 cut(s)	181
MluNI	TGGCCA	1 cut(s)	152
MlyI	GAGTC	3 cut(s)	289, 302, 545
MmeI	TCCRAC	2 cut(s)	222, 471
Mox20I	TGGCCA	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	545
Msp20I	TGGCCA	1 cut(s)	152
MspI	CCGG	5 cut(s)	77, 138, 170, 301, 353
MspR9I	CCNGG	4 cut(s)	77, 83, 301, 302
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	5 cut(s)	11, 60, 158, 433, 514
NciI	CCSGG	3 cut(s)	77, 301, 302
NdeII	GATC	2 cut(s)	270, 312
NlaIII	CATG	4 cut(s)	73, 100, 205, 478
NmeAIII	GCCGAG	1 cut(s)	387
NspI	RCATGY	1 cut(s)	100
PagI	TCATGA	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	143, 229, 232, 438, 441
PleI	GAGTC	3 cut(s)	288, 302, 544
PpsI	GAGTC	3 cut(s)	288, 302, 544
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	79
RsaI	GTAC	3 cut(s)	106, 119, 277
RsaNI	GTAC	3 cut(s)	105, 118, 276
RseI	CAYNNNNRTG	1 cut(s)	545
SalI	GTCGAC	1 cut(s)	305
SatI	GCNGC	5 cut(s)	142, 228, 231, 437, 440
Sau3AI	GATC	2 cut(s)	270, 312
Sau96I	GGNCC	1 cut(s)	79
ScaI	AGTACT	1 cut(s)	106
SchI	GAGTC	3 cut(s)	289, 302, 545
ScrFI	CCNGG	4 cut(s)	77, 83, 301, 302
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	6 cut(s)	16, 24, 260, 267, 486, 491
SfaNI	GCATC	1 cut(s)	225
SinI	GGWCC	1 cut(s)	79
SmaI	CCCGGG	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	545
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	4 cut(s)	141, 227, 230, 457
StyD4I	CCNGG	4 cut(s)	75, 81, 299, 300
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	5 cut(s)	306, 311, 447, 453, 534
TasI	AATT	1 cut(s)	181
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	3 cut(s)	144, 230, 233
TfiI	GAWTC	1 cut(s)	197
TseI	GCWGC	2 cut(s)	436, 439
TspDTI	ATGAA	2 cut(s)	86, 206
TspGWI	ACGGA	1 cut(s)	170
TspMI	CCCGGG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	79
XceI	RCATGY	1 cut(s)	100
XmaI	CCCGGG	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	332
ZrmI	AGTACT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.