Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006011

Physical Location & Seq

Genomic Coordinates Reverse (-)

20885470 .. 20886700

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032922

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCCGTTCAAGCTCGCCACCTCAATCTCTTCCCCTCTCAACAACTCATCTGCAACAACAGCGAAATCATGAACCCGGTTCAGGGAAACGGGGGCATGTATAGCACCCAGATTGGATACGGCGTGCCATTGATGACCGGCGGCGTGGTGGCGACGGAGGCTCTGCTTCCGGCGTATAATAATTCTGTGATGAACGATTCGATGCTTCCGAAAACGACTCCGTGCGCGGCGGCGATGCAGTCGGACAGTGGGCTCACATACAACGTCCCGATCAGTACGACTCTCCCAAGAAAGCGCTCCCGGGTCGACTCGATCAACCCGAACCCGGACTTGTTCTCCTACCCGAGTGCTCCGACGAGCCATCATTACAAGAACAACAACAACTCATTCTCGTTTCTCGGCGAGGACATTTCTCTGCAAATCCAGCAGCAGCAGTTCGACATCGACCGCCTCATTTCGCAACACATGGAGAAGGTGAGGTTAGAGATTGAAGAAAAGCGAAAGAGGCAAGCGAGGAGGATAATCGAGTCCATAGAAATGGGGATGATGAAGCGGCTGAGAGCCAAAGAGGTCGAGATCGAGAAAATCGGGAAGATGAATTGGGCTCTGGAAGAGAAGGTGAAGTCACTCTGCATAGAGAATCAAATATGGCGCGACTTGGCCCAGACCAACGAGGCCACCGCCAATGCTCTCCGGACCAACCTCGAACAAGTCCTGGCCCAGGTGAAAGTCGAGCCCAACAACAACAACAATCACAACCAAAACGACGCCGTGGCGGCCGCGCTGATGGACGACGCGCAGTCGTGCTGCGGGAGCAGCGGCGGAAACGACGACGTAGGGTGGCGGGCGGTGAAGGGGGAGGAAGGGACAAGCGGGTCGGGTACAGCAAGTGGGAGTAGGTGGTGCAGAAATTGCGGGAAGGCGGAATCGTGTGTGTTGCTGTTGCCGTGTAGGCACCTGTGCTTGTGTACGGTCTGTGGGTCATCCCTCCACACTTGCCCAGTCTGTAAATCCACCAAGAACGCTAGTGTGCATGTTAACATGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006915 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0012501 GO:0016567 GO:0019222 GO:0019538 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0036211 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043154 GO:0043170 GO:0043281 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051865 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

350

Amino Acids

38.36

Weight (kDa)

7.5

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	302 - 339	1.8e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79110 AT1G79110 AT1G79110 AT3G12920
fragaria_vesca	FvH4_3g15670 FvH4_3g15670
malus_domestica	MD01G1028600.v1.1 MD01G1030500.v1.1 MD05G1220500.v1.1 MD10G1202900.v1.1
prunus_persica	Prupe.4G139400_v2.0.a1 Prupe.4G139400_v2.0.a1
pyrus_communis	pycom05g20390 pycom05g20400 pycom10g17350
rosa_chinensis	RchiOBHm_Chr5g0026341
rosa_laevigata	RLG00000032922
rosa_multiflora	Rmu_co8156202.1_g000001 Rmu_sc0005764.1_g000002 Rmu_sc0025146.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053010
rosa_rugosa	Rorug05G0092400.1
rosa_samantha	Rh5AG185600 Rh5BG182400 Rh5CG201800 Rh5DG184200
rosa_wichuraiana	Rw5G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	874
AccB1I	GGYRCC	1 cut(s)	954
AccI	GTMKAC	1 cut(s)	306
AccII	CGCG	4 cut(s)	227, 654, 782, 797
AccIII	TCCGGA	1 cut(s)	693
AcoI	YGGCCR	2 cut(s)	3, 777
AcyI	GRCGYC	1 cut(s)	768
AfaI	GTAC	3 cut(s)	277, 883, 970
AfeI	AGCGCT	1 cut(s)	296
AfiI	CCNNNNNNNGG	4 cut(s)	82, 83, 325, 721
AflIII	ACRYGT	1 cut(s)	1041
AgsI	TTSAA	2 cut(s)	11, 491
AhdI	GACNNNNNGTC	1 cut(s)	799
AjnI	CCWGG	2 cut(s)	714, 720
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	352
Ama87I	CYCGRG	2 cut(s)	300, 343
Aor13HI	TCCGGA	1 cut(s)	693
Aor51HI	AGCGCT	1 cut(s)	296
AoxI	GGCC	5 cut(s)	3, 660, 675, 717, 777
ApeKI	GCWGC	4 cut(s)	427, 430, 807, 816
AspLEI	GCGC	5 cut(s)	227, 297, 654, 784, 799
AspS9I	GGNCC	3 cut(s)	661, 696, 718
AsuC2I	CCSGG	4 cut(s)	77, 301, 302, 326
AsuHPI	GGTGA	4 cut(s)	487, 631, 736, 862
AvaI	CYCGRG	2 cut(s)	300, 343
AvaII	GGWCC	1 cut(s)	696
BanI	GGYRCC	1 cut(s)	954
BanII	GRGCYC	3 cut(s)	255, 607, 738
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	4 cut(s)	439, 442, 794, 828
BccI	CCATC	2 cut(s)	369, 781
BceAI	ACGGC	3 cut(s)	136, 755, 931
BciT130I	CCWGG	2 cut(s)	716, 722
BciVI	GTATCC	1 cut(s)	110
BcnI	CCSGG	4 cut(s)	77, 301, 302, 326
BfaI	CTAG	1 cut(s)	1026
BfoI	RGCGCY	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	110
BglI	GCCNNNNNGGC	2 cut(s)	776, 952
Bme1390I	CCNGG	6 cut(s)	77, 301, 302, 326, 716, 722
Bme18I	GGWCC	1 cut(s)	696
BmeRI	GACNNNNNGTC	1 cut(s)	799
BmeT110I	CYCGRG	2 cut(s)	300, 343
BmgT120I	GGNCC	3 cut(s)	661, 696, 718
BmiI	GGNNCC	1 cut(s)	956
BmrFI	CCNGG	6 cut(s)	77, 301, 302, 326, 716, 722
BmrI	ACTGGG	1 cut(s)	995
BmsI	GCATC	2 cut(s)	192, 225
BmuI	ACTGGG	1 cut(s)	995
BpuMI	CCSGG	4 cut(s)	77, 301, 302, 326
BsaHI	GRCGYC	1 cut(s)	768
BsaJI	CCNNGG	3 cut(s)	300, 720, 771
BsaWI	WCCGGW	1 cut(s)	693
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 83, 325, 721
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	1001
BseAI	TCCGGA	1 cut(s)	693
BseBI	CCWGG	2 cut(s)	716, 722
BseDI	CCNNGG	3 cut(s)	300, 720, 771
BseGI	GGATG	2 cut(s)	549, 983
BseLI	CCNNNNNNNGG	4 cut(s)	82, 83, 325, 721
BseMII	CTCAG	1 cut(s)	548
BseNI	ACTGG	1 cut(s)	1001
BseRI	GAGGAG	1 cut(s)	529
BseX3I	CGGCCG	1 cut(s)	777
BseXI	GCAGC	4 cut(s)	439, 442, 794, 828
BsgI	GTGCAG	1 cut(s)	925
Bsh1236I	CGCG	4 cut(s)	227, 654, 782, 797
Bsh1285I	CGRYCG	2 cut(s)	448, 780
BshFI	GGCC	5 cut(s)	5, 662, 677, 719, 779
BshNI	GGYRCC	1 cut(s)	954
BsiEI	CGRYCG	2 cut(s)	448, 780
BsiHKAI	GWGCWC	1 cut(s)	352
BsiHKCI	CYCGRG	2 cut(s)	300, 343
BsiSI	CCGG	6 cut(s)	77, 138, 170, 301, 326, 694
BslFI	GGGAC	2 cut(s)	251, 880
BslI	CCNNNNNNNGG	4 cut(s)	82, 83, 325, 721
BsmFI	GGGAC	2 cut(s)	251, 880
BsnI	GGCC	5 cut(s)	5, 662, 677, 719, 779
BsoBI	CYCGRG	2 cut(s)	300, 343
Bsp1286I	GDGCHC	4 cut(s)	255, 352, 607, 738
Bsp13I	TCCGGA	1 cut(s)	693
Bsp143I	GATC	3 cut(s)	270, 312, 576
BspANI	GGCC	5 cut(s)	5, 662, 677, 719, 779
BspCNI	CTCAG	1 cut(s)	549
BspEI	TCCGGA	1 cut(s)	693
BspFNI	CGCG	4 cut(s)	227, 654, 782, 797
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	956
BspT107I	GGYRCC	1 cut(s)	954
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	1001
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	3 cut(s)	300, 720, 771
BssMI	GATC	3 cut(s)	270, 312, 576
BssNI	GRCGYC	1 cut(s)	768
Bst2UI	CCWGG	2 cut(s)	716, 722
Bst4CI	ACNGT	2 cut(s)	248, 973
Bst6I	CTCTTC	2 cut(s)	35, 606
BstACI	GRCGYC	1 cut(s)	768
BstAPI	GCANNNNNTGC	1 cut(s)	912
BstC8I	GCNNGC	4 cut(s)	16, 125, 510, 846
BstDEI	CTNAG	2 cut(s)	557, 1047
BstDSI	CCRYGG	1 cut(s)	771
BstENI	CCTNNNNNAGG	1 cut(s)	719
BstF5I	GGATG	2 cut(s)	549, 983
BstFNI	CGCG	4 cut(s)	227, 654, 782, 797
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	5 cut(s)	227, 297, 654, 784, 799
BstKTI	GATC	3 cut(s)	273, 315, 579
BstMBI	GATC	3 cut(s)	270, 312, 576
BstMCI	CGRYCG	2 cut(s)	448, 780
BstNI	CCWGG	2 cut(s)	716, 722
BstNSI	RCATGY	3 cut(s)	100, 1037, 1045
BstSCI	CCNGG	6 cut(s)	75, 299, 300, 324, 714, 720
BstUI	CGCG	4 cut(s)	227, 654, 782, 797
BstV1I	GCAGC	4 cut(s)	439, 442, 794, 828
BstXI	CCANNNNNNTGG	1 cut(s)	538
BstZI	CGGCCG	1 cut(s)	777
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	5 cut(s)	5, 662, 677, 719, 779
BtgI	CCRYGG	1 cut(s)	771
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	549, 983
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	4 cut(s)	16, 125, 510, 846
CciI	TCATGA	1 cut(s)	69
CciNI	GCGGCCGC	1 cut(s)	777
CfoI	GCGC	5 cut(s)	227, 297, 654, 784, 799
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	661, 696, 718
Cfr9I	CCCGGG	1 cut(s)	300
CseI	GACGC	2 cut(s)	776, 803
Csp6I	GTAC	3 cut(s)	276, 882, 969
CviAII	CATG	5 cut(s)	70, 97, 466, 1034, 1042
CviQI	GTAC	3 cut(s)	276, 882, 969
DdeI	CTNAG	2 cut(s)	557, 1047
DpnI	GATC	3 cut(s)	272, 314, 578
DpnII	GATC	3 cut(s)	270, 312, 576
DrdI	GACNNNNNNGTC	1 cut(s)	874
DriI	GACNNNNNGTC	1 cut(s)	799
DseDI	GACNNNNNNGTC	1 cut(s)	874
EaeI	YGGCCR	2 cut(s)	3, 777
EagI	CGGCCG	1 cut(s)	777
Eam1104I	CTCTTC	2 cut(s)	35, 606
Eam1105I	GACNNNNNGTC	1 cut(s)	799
EarI	CTCTTC	2 cut(s)	35, 606
EciI	GGCGGA	2 cut(s)	837, 938
EclXI	CGGCCG	1 cut(s)	777
Eco24I	GRGCYC	3 cut(s)	255, 607, 738
Eco47I	GGWCC	1 cut(s)	696
Eco47III	AGCGCT	1 cut(s)	296
Eco52I	CGGCCG	1 cut(s)	777
Eco88I	CYCGRG	2 cut(s)	300, 343
EcoNI	CCTNNNNNAGG	1 cut(s)	719
EcoRII	CCWGG	2 cut(s)	714, 720
EcoT38I	GRGCYC	3 cut(s)	255, 607, 738
FaeI	CATG	5 cut(s)	73, 100, 469, 1037, 1045
FaqI	GGGAC	2 cut(s)	251, 880
FatI	CATG	5 cut(s)	69, 96, 465, 1033, 1041
FauI	CCCGC	4 cut(s)	803, 837, 866, 908
FblI	GTMKAC	1 cut(s)	306
FokI	GGATG	2 cut(s)	556, 970
FriOI	GRGCYC	3 cut(s)	255, 607, 738
FspBI	CTAG	1 cut(s)	1026
GlaI	GCGC	5 cut(s)	226, 296, 653, 783, 798
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	5 cut(s)	5, 662, 677, 719, 779
HapII	CCGG	6 cut(s)	77, 138, 170, 301, 326, 694
HgaI	GACGC	2 cut(s)	776, 803
HhaI	GCGC	5 cut(s)	227, 297, 654, 784, 799
Hin1I	GRCGYC	1 cut(s)	768
Hin1II	CATG	5 cut(s)	73, 100, 469, 1037, 1045
Hin6I	GCGC	5 cut(s)	225, 295, 652, 782, 797
HinP1I	GCGC	5 cut(s)	225, 295, 652, 782, 797
HincII	GTYRAC	2 cut(s)	307, 1039
HindII	GTYRAC	2 cut(s)	307, 1039
HinfI	GANTC	7 cut(s)	197, 217, 280, 308, 527, 640, 926
HpaI	GTTAAC	1 cut(s)	1039
HpaII	CCGG	6 cut(s)	77, 138, 170, 301, 326, 694
HphI	GGTGA	4 cut(s)	487, 631, 736, 862
Hpy166II	GTNNAC	3 cut(s)	307, 969, 1039
Hpy188I	TCNGA	3 cut(s)	210, 244, 354
Hpy188III	TCNNGA	7 cut(s)	70, 268, 574, 580, 589, 608, 694
Hpy8I	GTNNAC	3 cut(s)	307, 969, 1039
Hpy99I	CGWCG	6 cut(s)	157, 358, 770, 797, 833, 836
HpyAV	CCTTC	5 cut(s)	466, 610, 847, 857, 913
HpyCH4III	ACNGT	2 cut(s)	248, 973
HpyCH4IV	ACGT	2 cut(s)	264, 834
HpyCH4V	TGCA	6 cut(s)	54, 238, 418, 633, 906, 1033
HpyF3I	CTNAG	2 cut(s)	557, 1047
HpySE526I	ACGT	2 cut(s)	264, 834
Hsp92I	GRCGYC	1 cut(s)	768
Hsp92II	CATG	5 cut(s)	73, 100, 469, 1037, 1045
HspAI	GCGC	5 cut(s)	225, 295, 652, 782, 797
Kpn2I	TCCGGA	1 cut(s)	693
KspAI	GTTAAC	1 cut(s)	1039
Kzo9I	GATC	3 cut(s)	270, 312, 576
LmnI	GCTCC	3 cut(s)	302, 355, 813
Lsp1109I	GCAGC	4 cut(s)	439, 442, 794, 828
LweI	GCATC	2 cut(s)	192, 225
MaeI	CTAG	1 cut(s)	1026
MaeII	ACGT	2 cut(s)	264, 834
MaeIII	GTNAC	1 cut(s)	624
MalI	GATC	3 cut(s)	272, 314, 578
MboI	GATC	3 cut(s)	270, 312, 576
MboII	GAAGA	4 cut(s)	22, 503, 604, 623
MhlI	GDGCHC	4 cut(s)	255, 352, 607, 738
MluCI	AATT	3 cut(s)	181, 598, 910
MlyI	GAGTC	4 cut(s)	211, 274, 302, 536
MmeI	TCCRAC	2 cut(s)	222, 377
MroI	TCCGGA	1 cut(s)	693
MseI	TTAA	1 cut(s)	1038
MslI	CAYNNNNRTG	1 cut(s)	536
MspA1I	CMGCKG	1 cut(s)	819
MspI	CCGG	6 cut(s)	77, 138, 170, 301, 326, 694
MspR9I	CCNGG	6 cut(s)	77, 301, 302, 326, 716, 722
MvaI	CCWGG	2 cut(s)	716, 722
MvnI	CGCG	4 cut(s)	227, 654, 782, 797
NciI	CCSGG	4 cut(s)	77, 301, 302, 326
NdeII	GATC	3 cut(s)	270, 312, 576
NlaIII	CATG	5 cut(s)	73, 100, 469, 1037, 1045
NlaIV	GGNNCC	1 cut(s)	956
NmeAIII	GCCGAG	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	624
NotI	GCGGCCGC	1 cut(s)	777
NspI	RCATGY	3 cut(s)	100, 1037, 1045
PagI	TCATGA	1 cut(s)	69
PciI	ACATGT	1 cut(s)	1041
PcsI	WCGNNNNNNNCGW	2 cut(s)	206, 317
PfeI	GAWTC	3 cut(s)	197, 640, 926
PleI	GAGTC	4 cut(s)	211, 274, 302, 535
PpsI	GAGTC	4 cut(s)	211, 274, 302, 535
PscI	ACATGT	1 cut(s)	1041
Psp6I	CCWGG	2 cut(s)	714, 720
PspGI	CCWGG	2 cut(s)	714, 720
PspN4I	GGNNCC	1 cut(s)	956
PspPI	GGNCC	3 cut(s)	661, 696, 718
RsaI	GTAC	3 cut(s)	277, 883, 970
RsaNI	GTAC	3 cut(s)	276, 882, 969
RseI	CAYNNNNRTG	1 cut(s)	536
SalI	GTCGAC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	1038
Sau3AI	GATC	3 cut(s)	270, 312, 576
Sau96I	GGNCC	3 cut(s)	661, 696, 718
SchI	GAGTC	4 cut(s)	211, 274, 302, 536
ScrFI	CCNGG	6 cut(s)	77, 301, 302, 326, 716, 722
SduI	GDGCHC	4 cut(s)	255, 352, 607, 738
SfaNI	GCATC	2 cut(s)	192, 225
SinI	GGWCC	1 cut(s)	696
SmaI	CCCGGG	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	536
Sse9I	AATT	3 cut(s)	181, 598, 910
SspMI	CTAG	1 cut(s)	1026
StyD4I	CCNGG	6 cut(s)	75, 299, 300, 324, 714, 720
TaaI	ACNGT	2 cut(s)	248, 973
TaiI	ACGT	2 cut(s)	267, 837
TasI	AATT	3 cut(s)	181, 598, 910
TauI	GCSGC	7 cut(s)	144, 230, 233, 556, 779, 782, 822
TfiI	GAWTC	3 cut(s)	197, 640, 926
Tru1I	TTAA	1 cut(s)	1038
Tru9I	TTAA	1 cut(s)	1038
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	624
TseI	GCWGC	4 cut(s)	427, 430, 807, 816
Tsp45I	GTSAC	1 cut(s)	624
TspDTI	ATGAA	4 cut(s)	86, 206, 563, 611
TspGWI	ACGGA	2 cut(s)	170, 210
TspMI	CCCGGG	1 cut(s)	300
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	696
XagI	CCTNNNNNAGG	1 cut(s)	719
XceI	RCATGY	3 cut(s)	100, 1037, 1045
XmaI	CCCGGG	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	1 cut(s)	1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.