Rh5DG184200

BOI-related E3 ubiquitin-protein ligase 3

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
20400474 .. 20401712
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG184200.1

Sequence Viewer

Length: 1050 bp
ATGGCCGTTCAAGCTCGCCACCTCAATCTCTTCCCCTCTCAACAACTCCTCTGCAACAACAGCGAAATCATGAACCCGGTCCAGGGAAACGGGGGCATGTATAGTACCCAGATTGGGTACGGCGTGCCATTGATGACCGGCGGCGTTGTGGCGACGGAGGCTCTGCTTCCGGCGTATAATAATTCTGTGATGAACGATTCGATGCTTCCGAAAACGACGCCGTGCGCGGTGGCGATGCAGTCGGACAGTGGGCTCACCTACAACGTCCCGATCAGTACGACTCTCCCAAGAAAGCGCTCCCGGGTCGACTCGATCAACCCGAACCCGAACTTGTTCTCCTACCCGAGTGCTCCGGCGAGCCATCATTACAAGAACAACAACGACAACCACAACTCATTCTCGTTTCTCGGCGAGGACATTTCTCTGCAAATCCAGCAGCAGCAGTTCGACATCGACCGCCTTATTTCGCAACACATGGAGAAGGTGAGGTTGGAGATTGAAGAAAAGCGAAAGAGGCAAGCGAGGAGGATAATCGAGTCCATAGAAATGGGGATGATGAAGCGGCTGAGAGCCAAAGAGGTCGAGATCGAGAAAATCGGGAAGATGAATTGGGCTCTGGAAGAGAAGGTGAAGTCACTCTGCATAGAGAATCAAATATGGCGCGACTTGGCCCAGACCAACGAGGCCACCGCCAATGCTCTCCGGACCAACCTCGAACAAGTCCTGGCCCAGGTGAAAGTCGAGCCCAACAACAACAACCAAAACGACGCCGTGGCGGCGGCGCTGATGGACGACGCGCAGTCGTGCTGCGGGAGCAGCGGCGGAAACGACGAGGTAGGGTGGCGGGCGGTGAAGGGGGAGGAAGGGACAAGCGGGTCGGGTACAGCAAGTGCGAGTAGGTGGTGCAGGAATTGCGGGAAGGAGGAATCGTGTGTGTTGCTGTTGCCGTGTAGGCACCTGTGCCTGTGTACGGTCTGTGGGTCATCCCTCCACACTTGCCCAGTCTGTAAATCCACCAAGAACGCTAGTGTGCATGTTAACATGTCTTAG

Protein Analysis

349

Amino Acids

38.45

Weight (kDa)

7.04

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 301 - 339 9e-09 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 874
AccB1I GGYRCC 1 cut(s) 954
AccI GTMKAC 1 cut(s) 306
AccII CGCG 3 cut(s) 227, 663, 797
AccIII TCCGGA 1 cut(s) 702
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 2 cut(s) 218, 768
AfaI GTAC 5 cut(s) 106, 119, 277, 883, 970
AfeI AGCGCT 1 cut(s) 296
AfiI CCNNNNNNNGG 5 cut(s) 82, 83, 114, 730, 970
AflIII ACRYGT 1 cut(s) 1041
AgsI TTSAA 2 cut(s) 11, 500
AhdI GACNNNNNGTC 1 cut(s) 799
AjnI CCWGG 3 cut(s) 81, 723, 729
AjuI GAANNNNNNNTTGG 2 cut(s) 473, 505
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw21I GWGCWC 1 cut(s) 352
Ama87I CYCGRG 2 cut(s) 300, 343
Aor13HI TCCGGA 1 cut(s) 702
Aor51HI AGCGCT 1 cut(s) 296
AoxI GGCC 4 cut(s) 3, 669, 684, 726
ApeKI GCWGC 4 cut(s) 436, 439, 807, 816
Asp700I GAANNNNTTC 1 cut(s) 332
AspLEI GCGC 5 cut(s) 227, 297, 663, 784, 799
AspS9I GGNCC 4 cut(s) 79, 670, 705, 727
AsuC2I CCSGG 3 cut(s) 77, 301, 302
AsuHPI GGTGA 5 cut(s) 247, 496, 640, 745, 862
AvaI CYCGRG 2 cut(s) 300, 343
AvaII GGWCC 2 cut(s) 79, 705
BanI GGYRCC 1 cut(s) 954
BanII GRGCYC 3 cut(s) 255, 616, 747
Bbv12I GWGCWC 1 cut(s) 352
BbvI GCAGC 4 cut(s) 448, 451, 794, 828
BccI CCATC 2 cut(s) 369, 781
BceAI ACGGC 4 cut(s) 136, 205, 755, 931
BciT130I CCWGG 3 cut(s) 83, 725, 731
BcnI CCSGG 3 cut(s) 77, 301, 302
BfaI CTAG 1 cut(s) 1026
BfoI RGCGCY 2 cut(s) 298, 785
BglI GCCNNNNNGGC 2 cut(s) 776, 952
BisI GCNGC 9 cut(s) 142, 437, 440, 563, 777, 780, 808, 817, 820
BlsI GCNGC 9 cut(s) 143, 438, 441, 564, 778, 781, 809, 818, 821
Bme1390I CCNGG 6 cut(s) 77, 83, 301, 302, 725, 731
Bme18I GGWCC 2 cut(s) 79, 705
BmeRI GACNNNNNGTC 1 cut(s) 799
BmeT110I CYCGRG 2 cut(s) 300, 343
BmgT120I GGNCC 4 cut(s) 79, 670, 705, 727
BmiI GGNNCC 1 cut(s) 956
BmrFI CCNGG 6 cut(s) 77, 83, 301, 302, 725, 731
BmrI ACTGGG 1 cut(s) 995
BmsI GCATC 2 cut(s) 192, 225
BmuI ACTGGG 1 cut(s) 995
BpuMI CCSGG 3 cut(s) 77, 301, 302
BsaHI GRCGYC 2 cut(s) 218, 768
BsaJI CCNNGG 4 cut(s) 82, 300, 729, 771
BsaWI WCCGGW 1 cut(s) 702
BsaXI ACNNNNNCTCC 4 cut(s) 320, 350, 914, 944
Bsc4I CCNNNNNNNGG 5 cut(s) 82, 83, 114, 730, 970
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 1001
BseAI TCCGGA 1 cut(s) 702
BseBI CCWGG 3 cut(s) 83, 725, 731
BseDI CCNNGG 4 cut(s) 82, 300, 729, 771
BseGI GGATG 2 cut(s) 558, 983
BseLI CCNNNNNNNGG 5 cut(s) 82, 83, 114, 730, 970
BseMII CTCAG 1 cut(s) 557
BseNI ACTGG 1 cut(s) 1001
BseRI GAGGAG 2 cut(s) 38, 538
BseXI GCAGC 4 cut(s) 448, 451, 794, 828
BsgI GTGCAG 1 cut(s) 925
Bsh1236I CGCG 3 cut(s) 227, 663, 797
Bsh1285I CGRYCG 1 cut(s) 457
BshFI GGCC 4 cut(s) 5, 671, 686, 728
BshNI GGYRCC 1 cut(s) 954
BsiEI CGRYCG 1 cut(s) 457
BsiHKAI GWGCWC 1 cut(s) 352
BsiHKCI CYCGRG 2 cut(s) 300, 343
BsiSI CCGG 6 cut(s) 77, 138, 170, 301, 353, 703
BslFI GGGAC 2 cut(s) 251, 880
BslI CCNNNNNNNGG 5 cut(s) 82, 83, 114, 730, 970
BsmFI GGGAC 2 cut(s) 251, 880
BsnI GGCC 4 cut(s) 5, 671, 686, 728
BsoBI CYCGRG 2 cut(s) 300, 343
Bsp1286I GDGCHC 4 cut(s) 255, 352, 616, 747
Bsp13I TCCGGA 1 cut(s) 702
Bsp143I GATC 3 cut(s) 270, 312, 585
BspANI GGCC 4 cut(s) 5, 671, 686, 728
BspCNI CTCAG 1 cut(s) 558
BspEI TCCGGA 1 cut(s) 702
BspFNI CGCG 3 cut(s) 227, 663, 797
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 956
BspT107I GGYRCC 1 cut(s) 954
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 1001
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 4 cut(s) 82, 300, 729, 771
BssMI GATC 3 cut(s) 270, 312, 585
BssNI GRCGYC 2 cut(s) 218, 768
Bst2UI CCWGG 3 cut(s) 83, 725, 731
Bst4CI ACNGT 2 cut(s) 248, 973
Bst6I CTCTTC 2 cut(s) 35, 615
BstACI GRCGYC 2 cut(s) 218, 768
BstAPI GCANNNNNTGC 1 cut(s) 912
BstC8I GCNNGC 5 cut(s) 16, 125, 358, 519, 846
BstDEI CTNAG 2 cut(s) 566, 1047
BstDSI CCRYGG 1 cut(s) 771
BstENI CCTNNNNNAGG 1 cut(s) 728
BstF5I GGATG 2 cut(s) 558, 983
BstFNI CGCG 3 cut(s) 227, 663, 797
BstH2I RGCGCY 2 cut(s) 298, 785
BstHHI GCGC 5 cut(s) 227, 297, 663, 784, 799
BstKTI GATC 3 cut(s) 273, 315, 588
BstMBI GATC 3 cut(s) 270, 312, 585
BstMCI CGRYCG 1 cut(s) 457
BstNI CCWGG 3 cut(s) 83, 725, 731
BstNSI RCATGY 3 cut(s) 100, 1037, 1045
BstSCI CCNGG 6 cut(s) 75, 81, 299, 300, 723, 729
BstUI CGCG 3 cut(s) 227, 663, 797
BstV1I GCAGC 4 cut(s) 448, 451, 794, 828
BstXI CCANNNNNNTGG 1 cut(s) 547
BsuRI GGCC 4 cut(s) 5, 671, 686, 728
BtgI CCRYGG 1 cut(s) 771
BtgZI GCGATG 1 cut(s) 248
BtsCI GGATG 2 cut(s) 558, 983
BtsIMutI CAGTG 1 cut(s) 253
Cac8I GCNNGC 5 cut(s) 16, 125, 358, 519, 846
CciI TCATGA 1 cut(s) 69
CfoI GCGC 5 cut(s) 227, 297, 663, 784, 799
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 4 cut(s) 79, 670, 705, 727
Cfr9I CCCGGG 1 cut(s) 300
CseI GACGC 3 cut(s) 226, 776, 803
Csp6I GTAC 5 cut(s) 105, 118, 276, 882, 969
CviAII CATG 5 cut(s) 70, 97, 475, 1034, 1042
CviQI GTAC 5 cut(s) 105, 118, 276, 882, 969
DdeI CTNAG 2 cut(s) 566, 1047
DpnI GATC 3 cut(s) 272, 314, 587
DpnII GATC 3 cut(s) 270, 312, 585
DrdI GACNNNNNNGTC 1 cut(s) 874
DriI GACNNNNNGTC 1 cut(s) 799
DseDI GACNNNNNNGTC 1 cut(s) 874
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 35, 615
Eam1105I GACNNNNNGTC 1 cut(s) 799
EarI CTCTTC 2 cut(s) 35, 615
EciI GGCGGA 1 cut(s) 837
Eco24I GRGCYC 3 cut(s) 255, 616, 747
Eco47I GGWCC 2 cut(s) 79, 705
Eco47III AGCGCT 1 cut(s) 296
Eco88I CYCGRG 2 cut(s) 300, 343
EcoNI CCTNNNNNAGG 1 cut(s) 728
EcoRII CCWGG 3 cut(s) 81, 723, 729
EcoT38I GRGCYC 3 cut(s) 255, 616, 747
FaeI CATG 5 cut(s) 73, 100, 478, 1037, 1045
FaqI GGGAC 2 cut(s) 251, 880
FatI CATG 5 cut(s) 69, 96, 474, 1033, 1041
FauI CCCGC 4 cut(s) 803, 837, 866, 908
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 9 cut(s) 142, 437, 440, 563, 777, 780, 808, 817, 820
FokI GGATG 2 cut(s) 565, 970
FriOI GRGCYC 3 cut(s) 255, 616, 747
Fsp4HI GCNGC 9 cut(s) 142, 437, 440, 563, 777, 780, 808, 817, 820
FspBI CTAG 1 cut(s) 1026
GlaI GCGC 5 cut(s) 226, 296, 662, 783, 798
GluI GCNGC 9 cut(s) 142, 437, 440, 563, 777, 780, 808, 817, 820
HaeII RGCGCY 2 cut(s) 298, 785
HaeIII GGCC 4 cut(s) 5, 671, 686, 728
HapII CCGG 6 cut(s) 77, 138, 170, 301, 353, 703
HgaI GACGC 3 cut(s) 226, 776, 803
HhaI GCGC 5 cut(s) 227, 297, 663, 784, 799
Hin1I GRCGYC 2 cut(s) 218, 768
Hin1II CATG 5 cut(s) 73, 100, 478, 1037, 1045
Hin6I GCGC 5 cut(s) 225, 295, 661, 782, 797
HinP1I GCGC 5 cut(s) 225, 295, 661, 782, 797
HincII GTYRAC 2 cut(s) 307, 1039
HindII GTYRAC 2 cut(s) 307, 1039
HinfI GANTC 6 cut(s) 197, 280, 308, 536, 649, 926
HpaI GTTAAC 1 cut(s) 1039
HpaII CCGG 6 cut(s) 77, 138, 170, 301, 353, 703
HphI GGTGA 5 cut(s) 247, 496, 640, 745, 862
Hpy166II GTNNAC 3 cut(s) 307, 969, 1039
Hpy188I TCNGA 2 cut(s) 210, 244
Hpy188III TCNNGA 7 cut(s) 70, 268, 583, 589, 598, 617, 703
Hpy8I GTNNAC 3 cut(s) 307, 969, 1039
Hpy99I CGWCG 5 cut(s) 157, 220, 770, 797, 833
HpyAV CCTTC 5 cut(s) 475, 619, 847, 857, 913
HpyCH4III ACNGT 2 cut(s) 248, 973
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 6 cut(s) 54, 238, 427, 642, 906, 1033
HpyF3I CTNAG 2 cut(s) 566, 1047
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 2 cut(s) 218, 768
Hsp92II CATG 5 cut(s) 73, 100, 478, 1037, 1045
HspAI GCGC 5 cut(s) 225, 295, 661, 782, 797
Kpn2I TCCGGA 1 cut(s) 702
KspAI GTTAAC 1 cut(s) 1039
Kzo9I GATC 3 cut(s) 270, 312, 585
LmnI GCTCC 3 cut(s) 302, 355, 813
Lsp1109I GCAGC 4 cut(s) 448, 451, 794, 828
LweI GCATC 2 cut(s) 192, 225
MaeI CTAG 1 cut(s) 1026
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 633
MalI GATC 3 cut(s) 272, 314, 587
MboI GATC 3 cut(s) 270, 312, 585
MboII GAAGA 4 cut(s) 22, 512, 613, 632
MhlI GDGCHC 4 cut(s) 255, 352, 616, 747
MluCI AATT 3 cut(s) 181, 607, 910
MlyI GAGTC 3 cut(s) 274, 302, 545
MmeI TCCRAC 2 cut(s) 222, 471
MroI TCCGGA 1 cut(s) 702
MroXI GAANNNNTTC 1 cut(s) 332
MseI TTAA 1 cut(s) 1038
MslI CAYNNNNRTG 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 819
MspI CCGG 6 cut(s) 77, 138, 170, 301, 353, 703
MspR9I CCNGG 6 cut(s) 77, 83, 301, 302, 725, 731
MvaI CCWGG 3 cut(s) 83, 725, 731
MvnI CGCG 3 cut(s) 227, 663, 797
NciI CCSGG 3 cut(s) 77, 301, 302
NdeII GATC 3 cut(s) 270, 312, 585
NlaIII CATG 5 cut(s) 73, 100, 478, 1037, 1045
NlaIV GGNNCC 1 cut(s) 956
NmeAIII GCCGAG 1 cut(s) 387
NmuCI GTSAC 1 cut(s) 633
NspI RCATGY 3 cut(s) 100, 1037, 1045
PagI TCATGA 1 cut(s) 69
PciI ACATGT 1 cut(s) 1041
PcsI WCGNNNNNNNCGW 2 cut(s) 206, 317
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 3 cut(s) 197, 649, 926
PkrI GCNGC 9 cut(s) 143, 438, 441, 564, 778, 781, 809, 818, 821
PleI GAGTC 3 cut(s) 274, 302, 544
PpsI GAGTC 3 cut(s) 274, 302, 544
PscI ACATGT 1 cut(s) 1041
Psp6I CCWGG 3 cut(s) 81, 723, 729
PspGI CCWGG 3 cut(s) 81, 723, 729
PspN4I GGNNCC 1 cut(s) 956
PspPI GGNCC 4 cut(s) 79, 670, 705, 727
RsaI GTAC 5 cut(s) 106, 119, 277, 883, 970
RsaNI GTAC 5 cut(s) 105, 118, 276, 882, 969
RseI CAYNNNNRTG 1 cut(s) 545
SalI GTCGAC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 1038
SatI GCNGC 9 cut(s) 142, 437, 440, 563, 777, 780, 808, 817, 820
Sau3AI GATC 3 cut(s) 270, 312, 585
Sau96I GGNCC 4 cut(s) 79, 670, 705, 727
SchI GAGTC 3 cut(s) 274, 302, 545
ScrFI CCNGG 6 cut(s) 77, 83, 301, 302, 725, 731
SduI GDGCHC 4 cut(s) 255, 352, 616, 747
SfaNI GCATC 2 cut(s) 192, 225
SinI GGWCC 2 cut(s) 79, 705
SmaI CCCGGG 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 545
Sse9I AATT 3 cut(s) 181, 607, 910
SspMI CTAG 1 cut(s) 1026
StyD4I CCNGG 6 cut(s) 75, 81, 299, 300, 723, 729
TaaI ACNGT 2 cut(s) 248, 973
TaiI ACGT 1 cut(s) 267
TasI AATT 3 cut(s) 181, 607, 910
TauI GCSGC 5 cut(s) 144, 565, 779, 782, 822
TfiI GAWTC 3 cut(s) 197, 649, 926
Tru1I TTAA 1 cut(s) 1038
Tru9I TTAA 1 cut(s) 1038
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 633
TseI GCWGC 4 cut(s) 436, 439, 807, 816
Tsp45I GTSAC 1 cut(s) 633
TspDTI ATGAA 4 cut(s) 86, 206, 572, 620
TspGWI ACGGA 1 cut(s) 170
TspMI CCCGGG 1 cut(s) 300
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 2 cut(s) 79, 705
XagI CCTNNNNNAGG 1 cut(s) 728
XceI RCATGY 3 cut(s) 100, 1037, 1045
XmaI CCCGGG 1 cut(s) 300
XmiI GTMKAC 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 1 cut(s) 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.